Rh2DG116200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000489
Physical Location & Seq
Reverse (-)
9595812 .. 9596149
338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG116200.1

Sequence Viewer

Length: 285 bp
ATGGTTACTAAGGTGTTCGAGGCGGCGCAAGAGGGCAATGTTGATGCCATTAGAGAACATAGTGATCATCTTCACCAAATGTTGACTCCAACCAAATCCACAGTCCTCCATGTCTATATTGCATGCGTAGGCAGTGTAAAGTTGACCAAGTCTGAAGAATTGCTAAAGTCAGCCGAGGTTGTAAGGGAGATATGCTCAAAATGTCCCAGCGGCTACTATTACAGCCAAACGAGAGCGGTGATACTGCCTTACATTTGGCGGCAAGACATGGCCATGCTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

94

Amino Acids

10.65

Weight (kDa)

6.89

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 236
AciI CCGC 4 cut(s) 23, 210, 236, 259
AcoI YGGCCR 1 cut(s) 270
AcuI CTGAAG 1 cut(s) 174
AoxI GGCC 1 cut(s) 270
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 65, 250
BalI TGGCCA 1 cut(s) 272
BclI TGATCA 1 cut(s) 64
BisI GCNGC 3 cut(s) 24, 211, 260
BlsI GCNGC 3 cut(s) 25, 212, 261
BmsI GCATC 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BsaJI CCNNGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 174
BseMI GCAATG 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 4 cut(s) 23, 210, 236, 259
BspANI GGCC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 126
BsuRI GGCC 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 28
CviAII CATG 4 cut(s) 110, 123, 268, 274
CviJI RGCY 4 cut(s) 173, 213, 225, 272
CviKI_1 RGCY 4 cut(s) 173, 213, 225, 272
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 174
FaeI CATG 4 cut(s) 113, 126, 271, 277
FaiI YATR 8 cut(s) 60, 111, 117, 124, 193, 269, 275, 283
FaqI GGGAC 1 cut(s) 189
FatI CATG 4 cut(s) 109, 122, 267, 273
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 24, 211, 260
Fsp4HI GCNGC 3 cut(s) 24, 211, 260
GlaI GCGC 1 cut(s) 27
GluI GCNGC 3 cut(s) 24, 211, 260
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 272
HhaI GCGC 1 cut(s) 28
Hin1II CATG 4 cut(s) 113, 126, 271, 277
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 2 cut(s) 84, 144
HindII GTYRAC 2 cut(s) 84, 144
HinfI GANTC 1 cut(s) 85
HphI GGTGA 2 cut(s) 65, 250
Hpy166II GTNNAC 2 cut(s) 84, 144
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 84, 144
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 4 cut(s) 113, 126, 271, 277
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 1 cut(s) 220
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 66
MbiI CCGCTC 1 cut(s) 236
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 62, 167
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 4 cut(s) 13, 25, 116, 169
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 210
NdeII GATC 1 cut(s) 64
NlaIII CATG 4 cut(s) 113, 126, 271, 277
NmeAIII GCCGAG 1 cut(s) 199
NspI RCATGY 1 cut(s) 126
PaeI GCATGC 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 3 cut(s) 25, 212, 261
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspFI CCCAGC 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 3 cut(s) 24, 211, 260
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 79
SetI ASST 2 cut(s) 15, 180
SfaNI GCATC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 272
SphI GCATGC 1 cut(s) 126
Sse9I AATT 1 cut(s) 158
SsiI CCGC 4 cut(s) 23, 210, 236, 259
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 158
TauI GCSGC 3 cut(s) 26, 213, 262
TscAI CASTG 1 cut(s) 139
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 148
XceI RCATGY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.