Rmu_co8242583.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8242583.1
OG0000489
Physical Location & Seq
Forward (+)
15 .. 775
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8242583.1_g000001.1.cds

Sequence Viewer

Length: 761 bp
atgaatccctctgattcagctgagacggagagtagtccaacatcggcctatcatgccacgatattggaggagaccaacgcaatgttctattctgaatggaaccagccaaaatctataccagtcaagaaaagcttaagcggcatggatactaaggtgttcaaggcggcacgagagggcaatattgatgcccttagagaacatagtgattatcttcaccagatattgactccaaccaaaaacacagtcctccatgtctatatagcttgcgtaggcagtgcaaggttgacaaagtctgaagaattgctgaagtcagccgaggctgtaagggagatgcttaaaatgtgccagcggctactattgcagccaaacgagagcggtgatactgtcttacacttagcggcaagacacggacgtgctgacatagttggagttcttattcaggctgcaaaagtctggcatggtgacctcgaggaaggtatcacatcaaaagaagtatgctaccagtttctcataagaagacgtaacgaggagaaaaacacagccttgcacgaggcagtgctgtttaatcatctagatgtggtaaagatattgactggggaagaccctgagtttttgtactctgctaatgatgctggcgaaactccagtatacatggctgccgaaagaggatatcgcgaattggtttttgaaatccttgacacctgcacaagttcatcctaccaaggacccgatggtttaacagctctacacgttgcagctgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

254

Amino Acids

28.19

Weight (kDa)

5.38

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 710
AbsI CCTCGAGG 1 cut(s) 467
Acc36I ACCTGC 1 cut(s) 710
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 675
AciI CCGC 5 cut(s) 138, 164, 349, 375, 398
AcuI CTGAAG 2 cut(s) 315, 326
AfaI GTAC 1 cut(s) 617
AflII CTTAAG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 2 cut(s) 160, 689
AjiI CACGTC 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 5 cut(s) 20, 132, 263, 743, 758
AluI AGCT 5 cut(s) 20, 132, 263, 743, 758
Alw26I GTCTC 2 cut(s) 17, 65
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 5 cut(s) 361, 443, 656, 755, 758
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 3 cut(s) 206, 389, 473
AvaI CYCGRG 1 cut(s) 467
AvaII GGWCC 1 cut(s) 725
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BauI CACGAG 2 cut(s) 168, 548
BbsI GAAGAC 2 cut(s) 523, 606
BbvI GCAGC 4 cut(s) 373, 430, 643, 745
BccI CCATC 1 cut(s) 725
BciVI GTATCC 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 17, 65
BfaI CTAG 1 cut(s) 572
BfrI CTTAAG 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 710
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 9 cut(s) 139, 165, 350, 362, 399, 444, 657, 756, 759
BlsI GCNGC 9 cut(s) 140, 166, 351, 363, 400, 445, 658, 757, 760
Bme18I GGWCC 1 cut(s) 725
BmeT110I CYCGRG 1 cut(s) 467
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 2 cut(s) 101, 727
BmrI ACTGGG 1 cut(s) 603
BmsI GCATC 3 cut(s) 175, 321, 619
BmuI ACTGGG 1 cut(s) 603
BpiI GAAGAC 2 cut(s) 523, 606
BpmI CTGGAG 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 315, 721
Bse1I ACTGG 4 cut(s) 119, 502, 598, 644
Bse3DI GCAATG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 315, 721
BseGI GGATG 1 cut(s) 713
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 12, 597
BseNI ACTGG 4 cut(s) 119, 502, 598, 644
BseRI GAGGAG 2 cut(s) 83, 542
BseXI GCAGC 4 cut(s) 373, 430, 643, 745
BsgI GTGCAG 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 467
BsmAI GTCTC 2 cut(s) 17, 65
BsmBI CGTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 467
Bsp68I TCGCGA 1 cut(s) 675
BspACI CCGC 5 cut(s) 138, 164, 349, 375, 398
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 13, 598
BspFNI CGCG 1 cut(s) 675
BspLI GGNNCC 2 cut(s) 101, 727
BspMI ACCTGC 1 cut(s) 710
BspTI CTTAAG 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 4 cut(s) 119, 502, 598, 644
BssECI CCNNGG 2 cut(s) 315, 721
BssNAI GTATAC 1 cut(s) 649
BssSI CACGAG 2 cut(s) 168, 548
BssT1I CCWWGG 1 cut(s) 721
Bst1107I GTATAC 1 cut(s) 649
Bst2BI CACGAG 2 cut(s) 168, 548
Bst4CI ACNGT 2 cut(s) 244, 385
BstAFI CTTAAG 1 cut(s) 133
BstC8I GCNNGC 3 cut(s) 265, 347, 634
BstDEI CTNAG 5 cut(s) 21, 150, 191, 394, 606
BstEII GGTNACC 1 cut(s) 461
BstF5I GGATG 1 cut(s) 713
BstFNI CGCG 1 cut(s) 675
BstMAI GTCTC 2 cut(s) 17, 65
BstMWI GCNNNNNNNGC 4 cut(s) 53, 138, 358, 629
BstPI GGTNACC 1 cut(s) 461
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 4 cut(s) 373, 430, 643, 745
BstV2I GAAGAC 2 cut(s) 523, 606
BstXI CCANNNNNNTGG 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 649
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 47
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 713
BtsI GCAGTG 2 cut(s) 280, 561
BtsIMutI CAGTG 2 cut(s) 280, 561
BtuMI TCGCGA 1 cut(s) 675
BveI ACCTGC 1 cut(s) 710
Cac8I GCNNGC 3 cut(s) 265, 347, 634
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 616
CviAII CATG 5 cut(s) 53, 142, 251, 458, 652
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 5 cut(s) 21, 150, 191, 394, 606
Eco130I CCWWGG 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 671
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 315, 326
Eco88I CYCGRG 1 cut(s) 467
Eco91I GGTNACC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 725
EcoO65I GGTNACC 1 cut(s) 461
EcoRV GATATC 1 cut(s) 671
EcoT14I CCWWGG 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 721
Esp3I CGTCTC 1 cut(s) 17
FaeI CATG 5 cut(s) 56, 145, 254, 461, 655
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 5 cut(s) 52, 141, 250, 457, 651
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 9 cut(s) 139, 165, 350, 362, 399, 444, 657, 756, 759
FokI GGATG 1 cut(s) 700
Fsp4HI GCNGC 9 cut(s) 139, 165, 350, 362, 399, 444, 657, 756, 759
FspBI CTAG 1 cut(s) 572
GluI GCNGC 9 cut(s) 139, 165, 350, 362, 399, 444, 657, 756, 759
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 1 cut(s) 47
Hin1II CATG 5 cut(s) 56, 145, 254, 461, 655
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 3 cut(s) 4, 14, 226
HphI GGTGA 3 cut(s) 206, 389, 473
Hpy166II GTNNAC 2 cut(s) 285, 649
Hpy188I TCNGA 3 cut(s) 13, 94, 295
Hpy188III TCNNGA 3 cut(s) 124, 572, 674
Hpy8I GTNNAC 2 cut(s) 285, 649
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 2 cut(s) 244, 385
HpyCH4IV ACGT 3 cut(s) 412, 520, 750
HpyCH4V TGCA 6 cut(s) 278, 361, 446, 547, 705, 755
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 138, 358, 629
HpyF3I CTNAG 5 cut(s) 21, 150, 191, 394, 606
HpySE526I ACGT 3 cut(s) 412, 520, 750
Hsp92II CATG 5 cut(s) 56, 145, 254, 461, 655
Lsp1109I GCAGC 4 cut(s) 373, 430, 643, 745
LweI GCATC 3 cut(s) 175, 321, 619
MaeI CTAG 1 cut(s) 572
MaeII ACGT 3 cut(s) 412, 520, 750
MaeIII GTNAC 2 cut(s) 461, 521
MbiI CCGCTC 1 cut(s) 375
MboII GAAGA 4 cut(s) 203, 308, 528, 611
MluCI AATT 2 cut(s) 299, 677
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 3 cut(s) 62, 254, 406
MseI TTAA 4 cut(s) 134, 336, 564, 737
MslI CAYNNNNRTG 2 cut(s) 411, 573
MspA1I CMGCKG 3 cut(s) 20, 349, 758
MspCI CTTAAG 1 cut(s) 133
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 4 cut(s) 53, 138, 358, 629
NlaIII CATG 5 cut(s) 56, 145, 254, 461, 655
NlaIV GGNNCC 2 cut(s) 101, 727
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 461
NruI TCGCGA 1 cut(s) 675
OliI CACNNNNGTG 1 cut(s) 411
PaeR7I CTCGAG 1 cut(s) 467
PaqCI CACCTGC 1 cut(s) 710
PfeI GAWTC 2 cut(s) 4, 14
PflFI GACNNNGTC 1 cut(s) 289
PkrI GCNGC 9 cut(s) 140, 166, 351, 363, 400, 445, 658, 757, 760
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
PspEI GGTNACC 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 101, 727
PspPI GGNCC 1 cut(s) 725
PspPPI RGGWCCY 1 cut(s) 725
PspXI VCTCGAGB 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 289
PvuII CAGCTG 2 cut(s) 20, 758
RruI TCGCGA 1 cut(s) 675
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 2 cut(s) 411, 573
SaqAI TTAA 4 cut(s) 134, 336, 564, 737
SatI GCNGC 9 cut(s) 139, 165, 350, 362, 399, 444, 657, 756, 759
Sau96I GGNCC 1 cut(s) 725
SchI GAGTC 1 cut(s) 220
SfaNI GCATC 3 cut(s) 175, 321, 619
Sfr274I CTCGAG 1 cut(s) 467
SinI GGWCC 1 cut(s) 725
SlaI CTCGAG 1 cut(s) 467
SmiMI CAYNNNNRTG 2 cut(s) 411, 573
SmlI CTYRAG 2 cut(s) 133, 467
SmoI CTYRAG 2 cut(s) 133, 467
Sse9I AATT 2 cut(s) 299, 677
SsiI CCGC 5 cut(s) 138, 164, 349, 375, 398
SspI AATATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 572
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 2 cut(s) 244, 385
TaiI ACGT 3 cut(s) 415, 523, 753
TaqI TCGA 1 cut(s) 468
TasI AATT 2 cut(s) 299, 677
TatI WGTACW 1 cut(s) 615
TauI GCSGC 4 cut(s) 141, 167, 352, 401
TfiI GAWTC 2 cut(s) 4, 14
Tru1I TTAA 4 cut(s) 134, 336, 564, 737
Tru9I TTAA 4 cut(s) 134, 336, 564, 737
TscAI CASTG 2 cut(s) 280, 561
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 5 cut(s) 361, 443, 656, 755, 758
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 17, 702
TspGWI ACGGA 2 cut(s) 41, 423
TspRI CASTG 2 cut(s) 280, 561
Tth111I GACNNNGTC 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 725
XbaI TCTAGA 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XhoI CTCGAG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 648
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.