Prupe.7G182000_v2.0.a1

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000489
Physical Location & Seq
Forward (+)
17741528 .. 17742854
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G182000.1

Sequence Viewer

Length: 834 bp
ATGAAAATGGAGGCTTGGAATTTGGCCGAGGCCAAGCTACAAGCAGATCGGAGAAACCATGAAGCTGGCATGGATCTTGATGTACACAATGCTGCAGACGAGGTCAATGTTGATGCCCTTTGGCAGCACAGAGAGCACGTTGACCAAGTGTTAACCCCAACCAAGGACACAGTTCTTTCGCACTGTCCTGGTTGCTGTGAGCAGCTACTGGTTTATAACAAGGAAAACTTGAACGCTTTACACATTGTTATAGCTGATGATGATTCTCTGCTGCCGACACTGAAGGAGCGCTCAAGCGCTAAAGCCGAAATGGAGGAGGTGGAGGAGAAGAAAGGTGGTAGTAGCTGCAGGGGATTCAGTGTGTTCAAATGTGGCAAAGACGCTGATGTAATATTGAAGGAAGTGAAAGAAGCTCATCTGGTAATGGCTACATTGATAGCAACTGTGACTTTCGTAGCGGGATTCGCCATGGCTGATTACGAAAGCGAAAAAGGAGGCGGCCAAGCTAGTCCAGCAAGAAATGCAGCTTTGATAGTTTTTGTTGTAACAGATACACTGGCCCTGTGTATGTCGGCTTGTTCTGTCCTGATGCACTTTTATTTGCCAGGGCCGAATGCCATTGTTTTGTCCTTATCTTCGACCATGTCCGCCTTGATTTTCATGGCGATTGCATTCATTTCTGGGGCATATGCAGCATCAGGTCATTCTCCGGGGCTTGCCGTGGCGGCTAGTGTGCTCGGCTGCTGGTACTTTTGGGCAGCTTTCTTCATGCTTGGCCGTCCATCTGCCAAAGCTTTTCTGAGGCATTTTAATCATGCTGCCACTGCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGG

Protein Analysis

278

Amino Acids

29.87

Weight (kDa)

5.63

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AciI CCGC 4 cut(s) 458, 498, 648, 725
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 3 cut(s) 24, 499, 775
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 2 cut(s) 84, 749
AfeI AGCGCT 2 cut(s) 290, 298
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 232, 367, 397
AjnI CCWGG 2 cut(s) 187, 604
Alw21I GWGCWC 2 cut(s) 138, 738
AlwI GGATC 1 cut(s) 81
AlwNI CAGNNNCTG 1 cut(s) 208
Aor51HI AGCGCT 2 cut(s) 290, 298
AoxI GGCC 6 cut(s) 24, 30, 499, 558, 608, 775
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 2 cut(s) 291, 299
AspS9I GGNCC 2 cut(s) 559, 608
AsuC2I CCSGG 1 cut(s) 711
Bbv12I GWGCWC 2 cut(s) 138, 738
BccI CCATC 1 cut(s) 790
BceAI ACGGC 2 cut(s) 704, 762
BciT130I CCWGG 2 cut(s) 189, 606
BcnI CCSGG 1 cut(s) 711
BfaI CTAG 2 cut(s) 507, 729
BfmI CTRYAG 3 cut(s) 93, 346, 825
BfoI RGCGCY 2 cut(s) 292, 300
BglI GCCNNNNNGGC 1 cut(s) 725
Bme1390I CCNGG 3 cut(s) 189, 606, 711
BmgT120I GGNCC 2 cut(s) 559, 608
BmrFI CCNGG 3 cut(s) 189, 606, 711
BmsI GCATC 3 cut(s) 103, 579, 704
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 711
BsaJI CCNNGG 6 cut(s) 27, 162, 468, 605, 710, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 213, 561
BseBI CCWGG 2 cut(s) 189, 606
BseDI CCNNGG 6 cut(s) 27, 162, 468, 605, 710, 720
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 791
BseNI ACTGG 2 cut(s) 213, 561
BseRI GAGGAG 2 cut(s) 329, 338
BshFI GGCC 6 cut(s) 26, 32, 501, 560, 610, 777
BsiHKAI GWGCWC 2 cut(s) 138, 738
BsiSI CCGG 1 cut(s) 710
BslI CCNNNNNNNGG 1 cut(s) 163
BsmI GAATGC 2 cut(s) 619, 671
BsnI GGCC 6 cut(s) 26, 32, 501, 560, 610, 777
Bsp1286I GDGCHC 2 cut(s) 138, 738
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 2 cut(s) 46, 73
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 4 cut(s) 458, 498, 648, 725
BspANI GGCC 6 cut(s) 26, 32, 501, 560, 610, 777
BspCNI CTCAG 1 cut(s) 792
BspMAI CTGCAG 3 cut(s) 97, 350, 829
BspPI GGATC 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 2 cut(s) 213, 561
BssECI CCNNGG 6 cut(s) 27, 162, 468, 605, 710, 720
BssMI GATC 2 cut(s) 46, 73
BssT1I CCWWGG 2 cut(s) 162, 468
Bst2UI CCWGG 2 cut(s) 189, 606
Bst4CI ACNGT 3 cut(s) 172, 185, 445
BstAPI GCANNNNNTGC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 67, 717
BstDEI CTNAG 2 cut(s) 800, 831
BstDSI CCRYGG 2 cut(s) 468, 720
BstH2I RGCGCY 2 cut(s) 292, 300
BstHHI GCGC 2 cut(s) 291, 299
BstKTI GATC 2 cut(s) 49, 76
BstMBI GATC 2 cut(s) 46, 73
BstMWI GCNNNNNNNGC 8 cut(s) 133, 464, 512, 521, 692, 725, 824, 827
BstNI CCWGG 2 cut(s) 189, 606
BstSCI CCNGG 3 cut(s) 187, 604, 709
BstSFI CTRYAG 3 cut(s) 93, 346, 825
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 65
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 6 cut(s) 26, 32, 501, 560, 610, 777
BtgI CCRYGG 2 cut(s) 468, 720
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 5 cut(s) 181, 278, 364, 554, 822
Cac8I GCNNGC 2 cut(s) 67, 717
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 2 cut(s) 291, 299
Cfr13I GGNCC 2 cut(s) 559, 608
CseI GACGC 1 cut(s) 389
Csp6I GTAC 2 cut(s) 83, 748
CviAII CATG 7 cut(s) 59, 70, 469, 643, 661, 769, 815
CviQI GTAC 2 cut(s) 83, 748
DdeI CTNAG 2 cut(s) 800, 831
DpnI GATC 2 cut(s) 48, 75
DpnII GATC 2 cut(s) 46, 73
EaeI YGGCCR 3 cut(s) 24, 499, 775
EciI GGCGGA 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 162, 468
Eco47III AGCGCT 2 cut(s) 290, 298
Eco57I CTGAAG 1 cut(s) 302
EcoRII CCWGG 2 cut(s) 187, 604
EcoT14I CCWWGG 2 cut(s) 162, 468
ErhI CCWWGG 2 cut(s) 162, 468
FaeI CATG 7 cut(s) 62, 73, 472, 646, 664, 772, 818
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 7 cut(s) 58, 69, 468, 642, 660, 768, 814
FauI CCCGC 1 cut(s) 451
FauNDI CATATG 1 cut(s) 688
FspBI CTAG 2 cut(s) 507, 729
GlaI GCGC 2 cut(s) 290, 298
HaeII RGCGCY 2 cut(s) 292, 300
HaeIII GGCC 6 cut(s) 26, 32, 501, 560, 610, 777
HapII CCGG 1 cut(s) 710
HgaI GACGC 1 cut(s) 389
HhaI GCGC 2 cut(s) 291, 299
Hin1II CATG 7 cut(s) 62, 73, 472, 646, 664, 772, 818
Hin6I GCGC 2 cut(s) 289, 297
HinP1I GCGC 2 cut(s) 289, 297
HincII GTYRAC 2 cut(s) 142, 153
HindII GTYRAC 2 cut(s) 142, 153
HindIII AAGCTT 1 cut(s) 792
HinfI GANTC 3 cut(s) 263, 354, 462
HpaI GTTAAC 1 cut(s) 153
HpaII CCGG 1 cut(s) 710
Hpy166II GTNNAC 3 cut(s) 85, 142, 153
Hpy188I TCNGA 2 cut(s) 51, 801
Hpy188III TCNNGA 2 cut(s) 77, 586
Hpy8I GTNNAC 3 cut(s) 85, 142, 153
HpyAV CCTTC 2 cut(s) 277, 391
HpyCH4III ACNGT 3 cut(s) 172, 185, 445
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 7 cut(s) 95, 348, 524, 592, 671, 692, 827
HpyF10VI GCNNNNNNNGC 8 cut(s) 133, 464, 512, 521, 692, 725, 824, 827
HpyF3I CTNAG 2 cut(s) 800, 831
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 7 cut(s) 62, 73, 472, 646, 664, 772, 818
HspAI GCGC 2 cut(s) 289, 297
KspAI GTTAAC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 46, 73
LmnI GCTCC 1 cut(s) 286
LweI GCATC 3 cut(s) 103, 579, 704
MaeI CTAG 2 cut(s) 507, 729
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 445, 544
MalI GATC 2 cut(s) 48, 75
MboI GATC 2 cut(s) 46, 73
MboII GAAGA 3 cut(s) 340, 627, 757
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 2 cut(s) 138, 738
MluCI AATT 1 cut(s) 19
MnlI CCTC 8 cut(s) 4, 22, 94, 307, 310, 316, 488, 795
MseI TTAA 2 cut(s) 152, 810
MspI CCGG 1 cut(s) 710
MspR9I CCNGG 3 cut(s) 189, 606, 711
Mva1269I GAATGC 2 cut(s) 619, 671
MvaI CCWGG 2 cut(s) 189, 606
MwoI GCNNNNNNNGC 8 cut(s) 133, 464, 512, 521, 692, 725, 824, 827
NciI CCSGG 1 cut(s) 711
NcoI CCATGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 688
NdeII GATC 2 cut(s) 46, 73
NlaIII CATG 7 cut(s) 62, 73, 472, 646, 664, 772, 818
NmeAIII GCCGAG 2 cut(s) 52, 717
NmuCI GTSAC 1 cut(s) 445
PctI GAATGC 2 cut(s) 619, 671
PfeI GAWTC 3 cut(s) 263, 354, 462
PflFI GACNNNGTC 2 cut(s) 101, 643
PsiI TTATAA 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 187, 604
PspGI CCWGG 2 cut(s) 187, 604
PspPI GGNCC 2 cut(s) 559, 608
PstI CTGCAG 3 cut(s) 97, 350, 829
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 73
PsyI GACNNNGTC 2 cut(s) 101, 643
RsaI GTAC 2 cut(s) 84, 749
RsaNI GTAC 2 cut(s) 83, 748
SaqAI TTAA 2 cut(s) 152, 810
Sau3AI GATC 2 cut(s) 46, 73
Sau96I GGNCC 2 cut(s) 559, 608
ScrFI CCNGG 3 cut(s) 189, 606, 711
SduI GDGCHC 2 cut(s) 138, 738
SfaNI GCATC 3 cut(s) 103, 579, 704
SfcI CTRYAG 3 cut(s) 93, 346, 825
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 1 cut(s) 19
SsiI CCGC 4 cut(s) 458, 498, 648, 725
SspI AATATT 1 cut(s) 393
SspMI CTAG 2 cut(s) 507, 729
StyD4I CCNGG 3 cut(s) 187, 604, 709
StyI CCWWGG 2 cut(s) 162, 468
TaaI ACNGT 3 cut(s) 172, 185, 445
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 638
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 82
TauI GCSGC 2 cut(s) 501, 728
TfiI GAWTC 3 cut(s) 263, 354, 462
Tru1I TTAA 2 cut(s) 152, 810
Tru9I TTAA 2 cut(s) 152, 810
TscAI CASTG 5 cut(s) 188, 285, 364, 561, 829
TseFI GTSAC 1 cut(s) 445
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 5 cut(s) 17, 75, 649, 664, 757
TspRI CASTG 5 cut(s) 188, 285, 364, 561, 829
Tth111I GACNNNGTC 2 cut(s) 101, 643
XapI RAATTY 1 cut(s) 19
XspI CTAG 2 cut(s) 507, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.