Rw2G008770

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000489
Physical Location & Seq
Reverse (-)
8769972 .. 8774929
4958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008770.1

Sequence Viewer

Length: 864 bp
ATGAAACAGCTTATTTTCTACTGCCCTGACAGTTTCGAATTGGTGGACCATAAGGGTCGCAATGCCCTGCATTTTGCAATTATCAAAAATAAAGATAAAGTAGAAGAGTTTGTTCGAAAAGATCCATGGCTTAGTAGCGTCCTTTTAAATGGCAAAGATTCTGTTGGAAACACACCTCTCCATTATATTGCTACTTCTCAAAATTACGAAGACTTGAAATTTATCAAGGATTCAAGAGTTGATAAGATGACATTCAACAAAAAAAATAAGAACACACTAAACATCATTCTAGGGAGCAATAATGCTAAGTTGGAGAAAGATATCAAACAAGGTTTGAGAAAATCTGGTGCAAGAGTAGGTCAACGAGTGTCAAGAGACAAAGATGATGACACGAAAGTCCATGTAAATGAAGGTGGCGAAGAGTCTAAATACAAGGAAATTAAAGAATCTCATTTGGTAGTGGCCACACTCATAGCAACTGTGACTTTCACAGCAGGTTTCACTATGCCTGGTGGTTACCATAGTGAAAAAGGGCCAGATCAAGGTTTTGCTGTTCTATCAAGAAATGCAGGTTTCAAGGCATTTTTGATAACTAATACATTGGCCCTGTATATGTCCAGTTGTGCCGTCATGATACGATTTTTCTTGTCGATGAAAAGGGAGCATCTTGTATCACAATTATTTAATGTGGCTCTAGACCTAGGTTTTATCTCTTATTCAATGATTGCTATGGGGGCTGCATTCCTTACTGGCACCTATATATTCAGTATTAGGTCATTCTTCATTAGGACTAGCCATTGCGGTTTGTGGTATTGGCTGCTTTTTTTTGTTGTTTTTGGTATTGTTATCATTTCTCCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

287

Amino Acids

32.48

Weight (kDa)

9.47

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 2 - 82 1.5e-06 Ankyrin repeats (3 copies)
PGG PF13962 142 - 254 6.9e-28 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
Acc36I ACCTGC 2 cut(s) 485, 560
AccB1I GGYRCC 1 cut(s) 752
AciI CCGC 1 cut(s) 801
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 5 cut(s) 217, 234, 256, 577, 720
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 1 cut(s) 116
AoxI GGCC 3 cut(s) 462, 533, 603
ApeKI GCWGC 2 cut(s) 737, 817
ApoI RAATTY 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 700
AspS9I GGNCC 3 cut(s) 46, 533, 604
AsuII TTCGAA 2 cut(s) 36, 115
AvaII GGWCC 1 cut(s) 46
AvrII CCTAGG 1 cut(s) 700
BalI TGGCCA 1 cut(s) 464
BanI GGYRCC 1 cut(s) 752
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 724, 804
BceAI ACGGC 1 cut(s) 611
BciT130I CCWGG 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 4 cut(s) 290, 695, 701, 792
BfuAI ACCTGC 2 cut(s) 485, 560
BisI GCNGC 2 cut(s) 738, 818
BlnI CCTAGG 1 cut(s) 700
BlsI GCNGC 2 cut(s) 739, 819
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 3 cut(s) 46, 533, 604
BmiI GGNNCC 1 cut(s) 754
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 216
Bpu14I TTCGAA 2 cut(s) 36, 115
BsaJI CCNNGG 3 cut(s) 125, 700, 857
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse1I ACTGG 2 cut(s) 618, 754
Bse3DI GCAATG 2 cut(s) 67, 796
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 3 cut(s) 125, 700, 857
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 2 cut(s) 67, 796
BseNI ACTGG 2 cut(s) 618, 754
BseXI GCAGC 2 cut(s) 724, 804
BshFI GGCC 3 cut(s) 464, 535, 605
BshNI GGYRCC 1 cut(s) 752
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 3 cut(s) 464, 535, 605
Bsp119I TTCGAA 2 cut(s) 36, 115
Bsp143I GATC 2 cut(s) 121, 538
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 1 cut(s) 801
BspANI GGCC 3 cut(s) 464, 535, 605
BspHI TCATGA 1 cut(s) 630
BspLI GGNNCC 1 cut(s) 754
BspMI ACCTGC 2 cut(s) 485, 560
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 2 cut(s) 36, 115
BspT107I GGYRCC 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 67, 796
BsrI ACTGG 2 cut(s) 618, 754
BssECI CCNNGG 3 cut(s) 125, 700, 857
BssMI GATC 2 cut(s) 121, 538
BssT1I CCWWGG 3 cut(s) 125, 700, 857
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 32, 481
Bst6I CTCTTC 2 cut(s) 99, 414
BstBI TTCGAA 2 cut(s) 36, 115
BstDEI CTNAG 2 cut(s) 131, 306
BstDSI CCRYGG 1 cut(s) 125
BstEII GGTNACC 1 cut(s) 515
BstKTI GATC 2 cut(s) 124, 541
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 2 cut(s) 121, 538
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstNI CCWGG 1 cut(s) 510
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 724, 804
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 3 cut(s) 464, 535, 605
BtgI CCRYGG 1 cut(s) 125
BveI ACCTGC 2 cut(s) 485, 560
CciI TCATGA 1 cut(s) 630
Cfr13I GGNCC 3 cut(s) 46, 533, 604
CseI GACGC 1 cut(s) 127
CviAII CATG 3 cut(s) 126, 401, 631
CviJI RGCY 9 cut(s) 10, 130, 464, 535, 605, 692, 737, 795, 817
CviKI_1 RGCY 9 cut(s) 10, 130, 464, 535, 605, 692, 737, 795, 817
DdeI CTNAG 2 cut(s) 131, 306
DpnI GATC 2 cut(s) 123, 540
DpnII GATC 2 cut(s) 121, 538
DraI TTTAAA 1 cut(s) 147
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 99, 414
EarI CTCTTC 2 cut(s) 99, 414
Eco130I CCWWGG 3 cut(s) 125, 700, 857
Eco32I GATATC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 515
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 508
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 3 cut(s) 125, 700, 857
ErhI CCWWGG 3 cut(s) 125, 700, 857
FaeI CATG 3 cut(s) 129, 404, 634
FatI CATG 3 cut(s) 125, 400, 630
Fnu4HI GCNGC 2 cut(s) 738, 818
Fsp4HI GCNGC 2 cut(s) 738, 818
FspBI CTAG 4 cut(s) 290, 695, 701, 792
GluI GCNGC 2 cut(s) 738, 818
HaeIII GGCC 3 cut(s) 464, 535, 605
HgaI GACGC 1 cut(s) 127
Hin1II CATG 3 cut(s) 129, 404, 634
HincII GTYRAC 1 cut(s) 362
HindII GTYRAC 1 cut(s) 362
HinfI GANTC 4 cut(s) 158, 230, 422, 446
Hpy166II GTNNAC 2 cut(s) 46, 362
Hpy188III TCNNGA 5 cut(s) 234, 372, 561, 631, 695
Hpy8I GTNNAC 2 cut(s) 46, 362
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 2 cut(s) 32, 481
HpyCH4V TGCA 5 cut(s) 70, 77, 350, 569, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 2 cut(s) 131, 306
Hsp92II CATG 3 cut(s) 129, 404, 634
Kzo9I GATC 2 cut(s) 121, 538
LmnI GCTCC 2 cut(s) 294, 661
Lsp1109I GCAGC 2 cut(s) 724, 804
LweI GCATC 1 cut(s) 673
MaeI CTAG 4 cut(s) 290, 695, 701, 792
MaeIII GTNAC 2 cut(s) 481, 515
MalI GATC 2 cut(s) 123, 540
MboI GATC 2 cut(s) 121, 538
MboII GAAGA 4 cut(s) 116, 221, 431, 772
MflI RGATCY 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 6 cut(s) 38, 78, 202, 218, 438, 677
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 145, 291
MnlI CCTC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 3 cut(s) 146, 441, 684
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 1 cut(s) 510
MwoI GCNNNNNNNGC 1 cut(s) 734
NcoI CCATGG 1 cut(s) 125
NdeII GATC 2 cut(s) 121, 538
NlaIII CATG 3 cut(s) 129, 404, 634
NlaIV GGNNCC 1 cut(s) 754
NmuCI GTSAC 1 cut(s) 481
NspV TTCGAA 2 cut(s) 36, 115
PagI TCATGA 1 cut(s) 630
PctI GAATGC 1 cut(s) 740
PfeI GAWTC 3 cut(s) 158, 230, 446
PkrI GCNGC 2 cut(s) 739, 819
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 508
PspEI GGTNACC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 754
PspPI GGNCC 3 cut(s) 46, 533, 604
PsuI RGATCY 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 3 cut(s) 146, 441, 684
SatI GCNGC 2 cut(s) 738, 818
Sau3AI GATC 2 cut(s) 121, 538
Sau96I GGNCC 3 cut(s) 46, 533, 604
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 510
SfaNI GCATC 1 cut(s) 673
SfuI TTCGAA 2 cut(s) 36, 115
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 405
Sse9I AATT 6 cut(s) 38, 78, 202, 218, 438, 677
SsiI CCGC 1 cut(s) 801
SspMI CTAG 4 cut(s) 290, 695, 701, 792
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 3 cut(s) 125, 700, 857
TaaI ACNGT 2 cut(s) 32, 481
TaqI TCGA 3 cut(s) 36, 115, 650
TasI AATT 6 cut(s) 38, 78, 202, 218, 438, 677
TfiI GAWTC 3 cut(s) 158, 230, 446
Tru1I TTAA 3 cut(s) 146, 441, 684
Tru9I TTAA 3 cut(s) 146, 441, 684
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 737, 817
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 4 cut(s) 17, 423, 668, 772
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 218
XbaI TCTAGA 1 cut(s) 694
XmaJI CCTAGG 1 cut(s) 700
XspI CTAG 4 cut(s) 290, 695, 701, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.