Prupe.7G182400_v2.0.a1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000489
Physical Location & Seq
Forward (+)
17760461 .. 17761147
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G182400.1

Sequence Viewer

Length: 687 bp
ATGGATCTAGATGTTTTCAACGCTGCAAAAGAAGGCAAAATTGATGTCCTCAGGGGACACGATCCGCAGCATCTTAACAAAATATTGACTCCAACCCGTAACACAGTCCTCCAAGTTTATATAGCTTATGCAAGCACCCCAAAGCTCGTCAAACCTAAAGAAGAAGCGCCGATCAAGCCAACCAGCTTTGTGGAGGATATCCTTCAGATCTGTCCGACACTGCTATGGCAGCAGAACGAGAGCGGTGAGACTGCCTTGCACATGGCGGCCAAACATGGGCTTGCTGAAATAGTTGAACTTCTCATCCAAACTGCAAAAGCTCGTCGTTGTGAAGACCTCGAGCATGGGGCTGCCGCCTTCGCCTTATCATCGTCATCAGAAGAAGAAGCAGCCTGCTGGAAAAATTTTATAAGGACACCTAGTAAGGAGAAGGACACAGCCTTGCACGAGGCAGTGCGGTTTAAGCACCTTGGTGTGGTGGAGATATTGATCAGAGAATACCCTGACTTTTCCTACCCTCCTAATGTTGCTGGGGAGACTCCACTTTATTTGGCTGCCGAGAGGAAATACAAAGCTTTGTTCTCCGAAATACTTCGCACTTGCAAGCATCCAACTTACCAAGGCCCCAATGGAAGAACCGCTTTGCATGCTGCAGTGATTTACGGTGATGAAGGTAGGTATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

229

Amino Acids

25.51

Weight (kDa)

6.31

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 6 cut(s) 65, 243, 266, 354, 457, 639
AclWI GGATC 2 cut(s) 12, 56
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 276, 475
AgsI TTSAA 2 cut(s) 19, 296
AleI CACNNNNGTG 1 cut(s) 471
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 5 cut(s) 125, 145, 186, 320, 575
AluI AGCT 5 cut(s) 125, 145, 186, 320, 575
Alw26I GTCTC 2 cut(s) 242, 530
AlwI GGATC 2 cut(s) 12, 56
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 2 cut(s) 267, 622
ApeKI GCWGC 7 cut(s) 23, 67, 229, 350, 389, 554, 650
ApoI RAATTY 1 cut(s) 403
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 2 cut(s) 257, 677
AvaI CYCGRG 1 cut(s) 338
AxyI CCTNAGG 1 cut(s) 50
BauI CACGAG 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 7 cut(s) 10, 79, 241, 337, 401, 541, 637
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 242, 530
BfaI CTAG 2 cut(s) 8, 420
BfmI CTRYAG 1 cut(s) 651
BfoI RGCGCY 1 cut(s) 170
BglII AGATCT 1 cut(s) 207
BisI GCNGC 9 cut(s) 24, 68, 230, 267, 351, 354, 390, 555, 651
BlsI GCNGC 9 cut(s) 25, 69, 231, 268, 352, 355, 391, 556, 652
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 1 cut(s) 625
BmsI GCATC 2 cut(s) 79, 616
BpiI GAAGAC 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 469, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 475
Bse21I CCTNAGG 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 469, 619
BseGI GGATG 2 cut(s) 303, 607
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 2 cut(s) 276, 475
BseMII CTCAG 1 cut(s) 64
BseXI GCAGC 7 cut(s) 10, 79, 241, 337, 401, 541, 637
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 2 cut(s) 269, 624
BsiHKCI CYCGRG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 276, 475
BsmAI GTCTC 2 cut(s) 242, 530
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 269, 624
BsoBI CYCGRG 1 cut(s) 338
Bsp143I GATC 5 cut(s) 4, 61, 171, 207, 489
BspACI CCGC 6 cut(s) 65, 243, 266, 354, 457, 639
BspANI GGCC 2 cut(s) 269, 624
BspCNI CTCAG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 625
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 2 cut(s) 12, 56
BsrBI CCGCTC 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 469, 619
BssMI GATC 5 cut(s) 4, 61, 171, 207, 489
BssSI CACGAG 1 cut(s) 446
BssT1I CCWWGG 2 cut(s) 469, 619
Bst2BI CACGAG 1 cut(s) 446
Bst4CI ACNGT 2 cut(s) 106, 665
BstC8I GCNNGC 5 cut(s) 133, 282, 394, 605, 648
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 303, 607
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 5 cut(s) 7, 64, 174, 210, 492
BstMAI GTCTC 2 cut(s) 242, 530
BstMBI GATC 5 cut(s) 4, 61, 171, 207, 489
BstMWI GCNNNNNNNGC 5 cut(s) 175, 229, 359, 463, 647
BstNSI RCATGY 1 cut(s) 650
BstSFI CTRYAG 1 cut(s) 651
BstV1I GCAGC 7 cut(s) 10, 79, 241, 337, 401, 541, 637
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 2 cut(s) 4, 207
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 2 cut(s) 4, 207
Bsu36I CCTNAGG 1 cut(s) 50
BsuRI GGCC 2 cut(s) 269, 624
BtsCI GGATG 2 cut(s) 303, 607
BtsI GCAGTG 3 cut(s) 218, 459, 660
BtsIMutI CAGTG 3 cut(s) 218, 459, 660
Cac8I GCNNGC 5 cut(s) 133, 282, 394, 605, 648
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 623
CspCI CAANNNNNGTGG 2 cut(s) 531, 566
CviAII CATG 4 cut(s) 262, 275, 344, 647
DdeI CTNAG 1 cut(s) 50
DpnI GATC 5 cut(s) 6, 63, 173, 209, 491
DpnII GATC 5 cut(s) 4, 61, 171, 207, 489
EaeI YGGCCR 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 469, 619
Eco32I GATATC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 623
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 469, 619
ErhI CCWWGG 2 cut(s) 469, 619
FaeI CATG 4 cut(s) 265, 278, 347, 650
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FaqI GGGAC 1 cut(s) 69
FatI CATG 4 cut(s) 261, 274, 343, 646
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 9 cut(s) 24, 68, 230, 267, 351, 354, 390, 555, 651
FokI GGATG 2 cut(s) 290, 594
Fsp4HI GCNGC 9 cut(s) 24, 68, 230, 267, 351, 354, 390, 555, 651
FspBI CTAG 2 cut(s) 8, 420
GlaI GCGC 1 cut(s) 168
GluI GCNGC 9 cut(s) 24, 68, 230, 267, 351, 354, 390, 555, 651
GsaI CCCAGC 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 269, 624
HhaI GCGC 1 cut(s) 169
Hin1II CATG 4 cut(s) 265, 278, 347, 650
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 2 cut(s) 88, 538
HphI GGTGA 2 cut(s) 257, 677
Hpy188I TCNGA 5 cut(s) 207, 216, 379, 494, 586
Hpy188III TCNNGA 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 5 cut(s) 26, 212, 367, 424, 665
HpyCH4III ACNGT 2 cut(s) 106, 665
HpyCH4V TGCA 8 cut(s) 26, 131, 259, 314, 445, 603, 646, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 229, 359, 463, 647
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 4 cut(s) 265, 278, 347, 650
HspAI GCGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 5 cut(s) 4, 61, 171, 207, 489
LpnPI CCDG 6 cut(s) 37, 196, 382, 406, 516, 516
Lsp1109I GCAGC 7 cut(s) 10, 79, 241, 337, 401, 541, 637
LweI GCATC 2 cut(s) 79, 616
MaeI CTAG 2 cut(s) 8, 420
MaeIII GTNAC 1 cut(s) 98
MalI GATC 5 cut(s) 6, 63, 173, 209, 491
MbiI CCGCTC 1 cut(s) 243
MboI GATC 5 cut(s) 4, 61, 171, 207, 489
MboII GAAGA 5 cut(s) 173, 344, 392, 395, 645
MflI RGATCY 2 cut(s) 4, 207
MluCI AATT 2 cut(s) 39, 403
MlyI GAGTC 2 cut(s) 82, 532
MmeI TCCRAC 3 cut(s) 116, 239, 635
MnlI CCTC 7 cut(s) 59, 119, 187, 347, 442, 528, 555
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 75, 462
MslI CAYNNNNRTG 2 cut(s) 223, 471
MwoI GCNNNNNNNGC 5 cut(s) 175, 229, 359, 463, 647
NdeII GATC 5 cut(s) 4, 61, 171, 207, 489
NlaIII CATG 4 cut(s) 265, 278, 347, 650
NlaIV GGNNCC 1 cut(s) 625
NmeAIII GCCGAG 1 cut(s) 583
NspI RCATGY 1 cut(s) 650
OliI CACNNNNGTG 1 cut(s) 471
PaeI GCATGC 1 cut(s) 650
PaeR7I CTCGAG 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 591
PkrI GCNGC 9 cut(s) 25, 69, 231, 268, 352, 355, 391, 556, 652
PleI GAGTC 2 cut(s) 82, 532
PpsI GAGTC 2 cut(s) 82, 532
PsiI TTATAA 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 625
PspPI GGNCC 1 cut(s) 623
PspXI VCTCGAGB 1 cut(s) 338
PstI CTGCAG 1 cut(s) 655
PsuI RGATCY 2 cut(s) 4, 207
RseI CAYNNNNRTG 2 cut(s) 223, 471
SaqAI TTAA 2 cut(s) 75, 462
SatI GCNGC 9 cut(s) 24, 68, 230, 267, 351, 354, 390, 555, 651
Sau3AI GATC 5 cut(s) 4, 61, 171, 207, 489
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 2 cut(s) 82, 532
SfaNI GCATC 2 cut(s) 79, 616
SfcI CTRYAG 1 cut(s) 651
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmiMI CAYNNNNRTG 2 cut(s) 223, 471
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SphI GCATGC 1 cut(s) 650
Sse9I AATT 2 cut(s) 39, 403
SsiI CCGC 6 cut(s) 65, 243, 266, 354, 457, 639
SspI AATATT 1 cut(s) 84
SspMI CTAG 2 cut(s) 8, 420
StyI CCWWGG 2 cut(s) 469, 619
TaaI ACNGT 2 cut(s) 106, 665
TaqI TCGA 1 cut(s) 339
TasI AATT 2 cut(s) 39, 403
TauI GCSGC 2 cut(s) 269, 356
Tru1I TTAA 2 cut(s) 75, 462
Tru9I TTAA 2 cut(s) 75, 462
TscAI CASTG 3 cut(s) 225, 459, 660
TseI GCWGC 7 cut(s) 23, 67, 229, 350, 389, 554, 650
TspDTI ATGAA 1 cut(s) 684
TspRI CASTG 3 cut(s) 225, 459, 660
XapI RAATTY 1 cut(s) 403
XbaI TCTAGA 1 cut(s) 7
XceI RCATGY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XhoI CTCGAG 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 2 cut(s) 8, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.