MD02G1117100.v1.1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000489
Physical Location & Seq
Reverse (-)
9547646 .. 9549162
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1117100.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGACGAGAGCATTACTAAAATCGGATAGAACTCTGGCAAAAGCAGCAGACGAACGAGGATGCATTCCGCTTCACATGGCTGCAGATTTTGGTTACTTTTCAATGGTTAATCAACTATTGGAATGTGATAAATCTACCGCCTACGTTGCTGATAATGATGGGCGCACAGCTCTTCACTTTGCAGCGTCCGACGGCCATCTAGATATAATGAAAGAGCTTCTTACTCATTGCCCCGATTGTTGTGAACTGGTCGACAACAAATGTCAAAATGTGCTTCACTATGCCATAAAGAGCCATCAAGAGGACGTAGTTTATTTTGTGTTAACGGATCTGTGGCTTAGCAACATACTCTTAAATGACAAGGATGCTCATGGCAATGCACCTATCCATTACCTTGCTCAGTATCCCTTCCCCTGGAAGAATGATATTATACTTGATGCGAAAATTGATATAATGTCATTCAACAAGAAAAACTTAAACGCTTTCGACAACATTCTAGCTAATGAGGACAACATAAGTGACGCACTTGATCTGGAAGATTTAAAAAAACTTTTGCAAGTAAGGGGTGGTGGACCAGGTTACAGAATTAAAAGCCACAACGCTGATGGCAATGAAGTGGAGGAGGAACACCAAGGTGGCAAAGACACTGGAGTAGGAATAACGAAAGCAAGAGAAACCCATCTGGTGGTGGCTACACTGATAGCAACCGTAACCTTTGCTGCGAGTTTTACCATGCCCGGTGGTTACCAAAGCGGAGGAGGATCGGACCAGGGTTCCCCAATTCTATCAAAAAACACAGCGTTCAAAGCATTTGTTATAACAGATACACTAGCCATGGCCCTGTCTAGTTGTTCTGTCCTGGTGCTCCTGTATTCCTCCATTCACACAAAAGGAAAGTACATGACCCAAATCTCTGAGACGTTTCAAATGGTAGTAACTTTGACAATGTTGGCTTTGATTGCAATGGTGATTGCATTCGTTACTGGCACATACGCAGTACTTGGTGGTCATTCTCCGGGATTAGCCATTGCAGTTCTTAAAAATACTAAAGGCCCCGCATTTCCTGCACCATTTGTATTCAGGCATTGTATTGCTAATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

368

Amino Acids

39.95

Weight (kDa)

5.94

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 24 - 108 1.2e-15 Ankyrin repeats (3 copies)
Ank_4 PF13637 24 - 71 8.4e-06 Ankyrin repeats (many copies)
Ank PF00023 53 - 79 6.8e-06 Ankyrin repeat
Ank_4 PF13637 58 - 106 4.8e-06 Ankyrin repeats (many copies)
PGG PF13962 220 - 333 1.8e-31 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 818
AccB7I CCANNNNNTGG 1 cut(s) 685
AccI GTMKAC 1 cut(s) 252
AciI CCGC 4 cut(s) 68, 138, 753, 1056
AclWI GGATC 2 cut(s) 336, 769
AcoI YGGCCR 1 cut(s) 193
AfaI GTAC 2 cut(s) 899, 999
AfiI CCNNNNNNNGG 3 cut(s) 301, 414, 685
AgsI TTSAA 4 cut(s) 102, 463, 805, 926
AjnI CCWGG 4 cut(s) 413, 574, 768, 858
AleI CACNNNNGTG 1 cut(s) 633
AluBI AGCT 3 cut(s) 170, 217, 500
AluI AGCT 3 cut(s) 170, 217, 500
Alw21I GWGCWC 1 cut(s) 867
Alw26I GTCTC 1 cut(s) 911
AlwI GGATC 2 cut(s) 336, 769
AoxI GGCC 3 cut(s) 193, 837, 1051
ApeKI GCWGC 4 cut(s) 44, 80, 182, 719
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 4 cut(s) 572, 766, 838, 1052
AsuC2I CCSGG 2 cut(s) 738, 1017
AsuHPI GGTGA 1 cut(s) 979
AvaII GGWCC 2 cut(s) 572, 766
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 4 cut(s) 56, 67, 194, 706
BccI CCATC 5 cut(s) 152, 204, 303, 599, 687
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 4 cut(s) 415, 576, 770, 860
BciVI GTATCC 1 cut(s) 414
BcnI CCSGG 2 cut(s) 738, 1017
BcoDI GTCTC 1 cut(s) 911
BfaI CTAG 4 cut(s) 200, 497, 830, 846
BfmI CTRYAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 4 cut(s) 45, 81, 183, 720
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 4 cut(s) 46, 82, 184, 721
BmcAI AGTACT 1 cut(s) 999
Bme1390I CCNGG 6 cut(s) 415, 576, 738, 770, 860, 1017
Bme18I GGWCC 2 cut(s) 572, 766
BmgT120I GGNCC 4 cut(s) 572, 766, 838, 1052
BmiI GGNNCC 2 cut(s) 775, 1054
BmrFI CCNGG 6 cut(s) 415, 576, 738, 770, 860, 1017
BmsI GCATC 3 cut(s) 50, 355, 427
BpmI CTGGAG 1 cut(s) 669
Bpu1102I GCTNAGC 1 cut(s) 338
BpuMI CCSGG 2 cut(s) 738, 1017
BsaJI CCNNGG 4 cut(s) 413, 631, 769, 834
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 414, 685
Bse1I ACTGG 3 cut(s) 252, 652, 988
Bse3DI GCAATG 5 cut(s) 226, 382, 616, 969, 1026
BseBI CCWGG 4 cut(s) 415, 576, 770, 860
BseDI CCNNGG 4 cut(s) 413, 631, 769, 834
BseGI GGATG 2 cut(s) 65, 370
BseLI CCNNNNNNNGG 3 cut(s) 301, 414, 685
BseMI GCAATG 5 cut(s) 226, 382, 616, 969, 1026
BseMII CTCAG 2 cut(s) 413, 906
BseNI ACTGG 3 cut(s) 252, 652, 988
BseRI GAGGAG 2 cut(s) 635, 771
BseXI GCAGC 4 cut(s) 56, 67, 194, 706
BsgI GTGCAG 1 cut(s) 1050
BshFI GGCC 3 cut(s) 195, 839, 1053
BsiHKAI GWGCWC 1 cut(s) 867
BsiSI CCGG 2 cut(s) 738, 1016
BslI CCNNNNNNNGG 3 cut(s) 301, 414, 685
BsmAI GTCTC 1 cut(s) 911
BsmBI CGTCTC 1 cut(s) 911
BsmI GAATGC 2 cut(s) 63, 974
BsnI GGCC 3 cut(s) 195, 839, 1053
Bsp1286I GDGCHC 1 cut(s) 867
Bsp143I GATC 3 cut(s) 328, 529, 761
Bsp1720I GCTNAGC 1 cut(s) 338
Bsp19I CCATGG 1 cut(s) 834
BspACI CCGC 4 cut(s) 68, 138, 753, 1056
BspANI GGCC 3 cut(s) 195, 839, 1053
BspCNI CTCAG 2 cut(s) 412, 907
BspLI GGNNCC 2 cut(s) 775, 1054
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 2 cut(s) 336, 769
BspQI GCTCTTC 1 cut(s) 177
BsrDI GCAATG 5 cut(s) 226, 382, 616, 969, 1026
BsrI ACTGG 3 cut(s) 252, 652, 988
BssECI CCNNGG 4 cut(s) 413, 631, 769, 834
BssMI GATC 3 cut(s) 328, 529, 761
BssT1I CCWWGG 2 cut(s) 631, 834
Bst2UI CCWGG 4 cut(s) 415, 576, 770, 860
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstDEI CTNAG 3 cut(s) 338, 399, 915
BstDSI CCRYGG 1 cut(s) 834
BstEII GGTNACC 1 cut(s) 743
BstF5I GGATG 2 cut(s) 65, 370
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 331, 532, 764
BstMAI GTCTC 1 cut(s) 911
BstMBI GATC 3 cut(s) 328, 529, 761
BstMWI GCNNNNNNNGC 5 cut(s) 44, 146, 806, 959, 1064
BstNI CCWGG 4 cut(s) 415, 576, 770, 860
BstPI GGTNACC 1 cut(s) 743
BstSCI CCNGG 6 cut(s) 413, 574, 736, 768, 858, 1015
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 4 cut(s) 56, 67, 194, 706
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 3 cut(s) 195, 839, 1053
BtgI CCRYGG 1 cut(s) 834
BtsCI GGATG 2 cut(s) 65, 370
BtsIMutI CAGTG 2 cut(s) 645, 695
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 4 cut(s) 572, 766, 838, 1052
CseI GACGC 2 cut(s) 174, 530
CsiI ACCWGGT 1 cut(s) 574
Csp6I GTAC 2 cut(s) 898, 998
CviAII CATG 5 cut(s) 76, 371, 733, 835, 901
CviQI GTAC 2 cut(s) 898, 998
DdeI CTNAG 3 cut(s) 338, 399, 915
DpnI GATC 3 cut(s) 330, 531, 763
DpnII GATC 3 cut(s) 328, 529, 761
DraI TTTAAA 1 cut(s) 543
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 631, 834
Eco47I GGWCC 2 cut(s) 572, 766
Eco91I GGTNACC 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 1052
EcoO65I GGTNACC 1 cut(s) 743
EcoRII CCWGG 4 cut(s) 413, 574, 768, 858
EcoT14I CCWWGG 2 cut(s) 631, 834
EcoT22I ATGCAT 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 631, 834
Esp3I CGTCTC 1 cut(s) 911
FaeI CATG 5 cut(s) 79, 374, 736, 838, 904
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 458, 490
FatI CATG 5 cut(s) 75, 370, 732, 834, 900
FauI CCCGC 1 cut(s) 1063
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 45, 81, 183, 720
FokI GGATG 2 cut(s) 72, 377
Fsp4HI GCNGC 4 cut(s) 45, 81, 183, 720
FspBI CTAG 4 cut(s) 200, 497, 830, 846
GlaI GCGC 1 cut(s) 164
GluI GCNGC 4 cut(s) 45, 81, 183, 720
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 3 cut(s) 195, 839, 1053
HapII CCGG 2 cut(s) 738, 1016
HgaI GACGC 2 cut(s) 174, 530
HhaI GCGC 1 cut(s) 165
Hin1II CATG 5 cut(s) 79, 374, 736, 838, 904
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 2 cut(s) 253, 324
HindII GTYRAC 2 cut(s) 253, 324
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 2 cut(s) 738, 1016
HphI GGTGA 1 cut(s) 979
Hpy166II GTNNAC 4 cut(s) 245, 253, 324, 572
Hpy188I TCNGA 4 cut(s) 25, 190, 766, 916
Hpy188III TCNNGA 3 cut(s) 200, 299, 533
Hpy8I GTNNAC 4 cut(s) 245, 253, 324, 572
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 3 cut(s) 144, 306, 920
HpyCH4V TGCA 9 cut(s) 63, 83, 182, 380, 556, 962, 974, 1031, 1067
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 146, 806, 959, 1064
HpyF3I CTNAG 3 cut(s) 338, 399, 915
HpySE526I ACGT 3 cut(s) 144, 306, 920
Hsp92II CATG 5 cut(s) 79, 374, 736, 838, 904
HspAI GCGC 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 328, 529, 761
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 870
Lsp1109I GCAGC 4 cut(s) 56, 67, 194, 706
LweI GCATC 3 cut(s) 50, 355, 427
MabI ACCWGGT 1 cut(s) 574
MaeI CTAG 4 cut(s) 200, 497, 830, 846
MaeII ACGT 3 cut(s) 144, 306, 920
MaeIII GTNAC 7 cut(s) 92, 518, 578, 709, 743, 934, 979
MalI GATC 3 cut(s) 330, 531, 763
MboI GATC 3 cut(s) 328, 529, 761
MboII GAAGA 3 cut(s) 164, 430, 548
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 867
MluCI AATT 3 cut(s) 444, 585, 780
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 8 cut(s) 50, 295, 499, 613, 616, 749, 752, 886
Mph1103I ATGCAT 1 cut(s) 65
MseI TTAA 7 cut(s) 108, 323, 353, 476, 542, 588, 1038
MslI CAYNNNNRTG 2 cut(s) 375, 633
MspI CCGG 2 cut(s) 738, 1016
MspR9I CCNGG 6 cut(s) 415, 576, 738, 770, 860, 1017
Mva1269I GAATGC 2 cut(s) 63, 974
MvaI CCWGG 4 cut(s) 415, 576, 770, 860
MwoI GCNNNNNNNGC 5 cut(s) 44, 146, 806, 959, 1064
NciI CCSGG 2 cut(s) 738, 1017
NcoI CCATGG 1 cut(s) 834
NdeII GATC 3 cut(s) 328, 529, 761
NlaIII CATG 5 cut(s) 79, 374, 736, 838, 904
NlaIV GGNNCC 2 cut(s) 775, 1054
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 633
PciSI GCTCTTC 1 cut(s) 177
PctI GAATGC 2 cut(s) 63, 974
PflMI CCANNNNNTGG 1 cut(s) 685
PfoI TCCNGGA 1 cut(s) 1015
PkrI GCNGC 4 cut(s) 46, 82, 184, 721
PsiI TTATAA 1 cut(s) 818
Psp6I CCWGG 4 cut(s) 413, 574, 768, 858
PspEI GGTNACC 1 cut(s) 743
PspGI CCWGG 4 cut(s) 413, 574, 768, 858
PspN4I GGNNCC 2 cut(s) 775, 1054
PspPI GGNCC 4 cut(s) 572, 766, 838, 1052
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 2 cut(s) 899, 999
RsaNI GTAC 2 cut(s) 898, 998
RseI CAYNNNNRTG 2 cut(s) 375, 633
SalI GTCGAC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 7 cut(s) 108, 323, 353, 476, 542, 588, 1038
SatI GCNGC 4 cut(s) 45, 81, 183, 720
Sau3AI GATC 3 cut(s) 328, 529, 761
Sau96I GGNCC 4 cut(s) 572, 766, 838, 1052
ScaI AGTACT 1 cut(s) 999
ScrFI CCNGG 6 cut(s) 415, 576, 738, 770, 860, 1017
SduI GDGCHC 1 cut(s) 867
SexAI ACCWGGT 1 cut(s) 574
SfaNI GCATC 3 cut(s) 50, 355, 427
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 2 cut(s) 572, 766
SmiMI CAYNNNNRTG 2 cut(s) 375, 633
Sse9I AATT 3 cut(s) 444, 585, 780
SsiI CCGC 4 cut(s) 68, 138, 753, 1056
SspMI CTAG 4 cut(s) 200, 497, 830, 846
StyD4I CCNGG 6 cut(s) 413, 574, 736, 768, 858, 1015
StyI CCWWGG 2 cut(s) 631, 834
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 3 cut(s) 147, 309, 923
TaqI TCGA 2 cut(s) 252, 486
TasI AATT 3 cut(s) 444, 585, 780
TatI WGTACW 2 cut(s) 897, 997
Tru1I TTAA 7 cut(s) 108, 323, 353, 476, 542, 588, 1038
Tru9I TTAA 7 cut(s) 108, 323, 353, 476, 542, 588, 1038
TscAI CASTG 2 cut(s) 652, 702
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 4 cut(s) 44, 80, 182, 719
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 2 cut(s) 224, 627
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 2 cut(s) 652, 702
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 572, 766
XbaI TCTAGA 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 4 cut(s) 200, 497, 830, 846
ZrmI AGTACT 1 cut(s) 999
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.