FvH4_1g10390

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000489
Physical Location & Seq
Reverse (-)
5667205 .. 5669499
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10390.t1

Sequence Viewer

Length: 1710 bp
ATGCTTGGAATGTGCCAGCCGCTACTACTGCAGCCAAACCAGAGCGGCGATACTGCCTTACACTTGGCGGCAAGACACGGACGTGCTGAGATAGTTCAAGTTCTTATTCAGGCTGCGAAAGTCCGGCATGGCGACCTGGAGGAAGGTATCTCATCACGAGAAGCATGCCACCAGTTTCTGATAAGAAGAACTAAGAAGGAGAAAAACACAGCCTTGCATGAGGCAGTGCGGTTCAATCACTTTGATGTGGTTAAAAAATTGACTGAGGAAGACCCTGGGTTTTTGTACTCTGCTAATGATGCTGGCGAAACTCCACTCTACATGGCTGCTGAGAGGGGACATACCCAATTGGTTTCCAAAATCCTCGACACTTGCACTAGTCCATCCTACCAAGGACCCAAAGGTTTAACAGCTTTACACATTGCAGCGATCTACGGTGATGAAGAAATAACGAAAAGATTACTTGAGACGGAAAGGGCGCTAGCAAAAGCACCTGACGTAGAAGGAAGGACTCCACTTCATATGGCTGCAATTACGGGCAACGTTTCAATTGTGAAACAAATACTGGAATGTGACAAGTCCACTGCCTACATTGGCGACAATGACAAGAGCACACCAGTTCATTATGCTGCTCATAAGATGTTCAGGTTCAGGTGTGGAGATGTACTGAAGCAGCTCTATTTCTACTCCCCTGACAGTTTCGAGTTGGTGGACGATAAGGGTCGCAATGCCCTTCATATTGCAATTATCAATAATGATGATGAAGCAGAAAATTTTGTTCGGGAAGATCCATGGCTTAGTAGTGTCATGTTAAACGGCAAAGATTCGGCCGGAAACACACCTCTCCATCAAATTGCTATTTCCGAAAGCTACCTAGGCTTGGAATTCATCAGTGATTCTAGAGTCGATAAGATGGCATTCAACAAAGAAAATATGAACGCGCTAAACATAGGTGAAAAAAGCACCGATCGTCCGTGGAGGAGAAAACTCCGTGAGGAATTGACAAAGTCAGGTGCAAGATGGGGTTGGCGACTACAGTCAATAAGAGAGAATAGTGGTGGCAAGGAAGTAGTCGATGTGAAAAAAGGTGACCGAGAGTCAAACTTCAAGGACCTAAAAGAATCTCATTTAGTAGTGTCTGCGCTCATAGCAACTGTTACATTCGCCGCCGGCTTCACTGTCCCCGGTGGTTATGTGAGTGAACAAGGACCAAACCAGGGTCATGCAGTTCTATCAAGAAATGCAGCTTTCAAGACATTTGTGATAACAAATACATTAGCCATGAGTCTGTCCAGTTGTGCTATCGTGGTACACTTTTGTATGTTGTGGAGAAGGAAGGAAATTACGGTACTTCGCTTAGCATTGGGACCATATGGGGCGGCAATAGAACTCACCGTGTACGCCATGGTTGCAATGGTGGTGGCATTCGTTACCGGCACATACGCAGTATTAGGATGTCCTTCCTCATTAGGACTCGCGATTGAGGCTTCTGTTCTTGGGTGTGTTTTCTTCTTTGGCCACGGTGCCTTCTTGTTATTTCTTCATCCGGATTTTTCTAGTTGGCGGCGGTTTCAGGATTTTATTTGGAGAACGAAAAGATTATTAAACTGTTTTTGTAATACTGAATTGCAAAACAAAAACCGGAGATTAAATAACTACATGTTTTCAAGATCTAAACATGTGTTCGGTAGAAGTATTTCAGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

570

Amino Acids

63.53

Weight (kDa)

8.5

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 11 - 89 2.2e-10 Ankyrin repeats (3 copies)
Ank PF00023 16 - 41 1e-05 Ankyrin repeat
Ank_2 PF12796 99 - 156 1.1e-08 Ankyrin repeats (3 copies)
Ank_5 PF13857 129 - 176 6.5e-06 Ankyrin repeats (many copies)
Ank_4 PF13637 139 - 186 1.9e-08 Ankyrin repeats (many copies)
Ank_2 PF12796 166 - 212 7.5e-07 Ankyrin repeats (3 copies)
PGG PF13962 368 - 483 9.6e-28 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1523
AccBSI CCGCTC 1 cut(s) 45
AccII CGCG 2 cut(s) 941, 1478
AccIII TCCGGA 1 cut(s) 1546
AciI CCGC 8 cut(s) 20, 45, 68, 229, 1167, 1379, 1564, 1567
AclI AACGTT 1 cut(s) 543
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 2 cut(s) 828, 1516
AcsI RAATTY 2 cut(s) 772, 884
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 5 cut(s) 287, 666, 1311, 1350, 1400
AfiI CCNNNNNNNGG 2 cut(s) 880, 1217
AflIII ACRYGT 2 cut(s) 1659, 1678
AgsI TTSAA 7 cut(s) 98, 235, 549, 922, 1108, 1252, 1668
AhdI GACNNNNNGTC 1 cut(s) 1096
AhlI ACTAGT 1 cut(s) 377
AjiI CACGTC 1 cut(s) 83
AjnI CCWGG 3 cut(s) 135, 274, 1215
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 4 cut(s) 413, 676, 870, 1247
AluI AGCT 4 cut(s) 413, 676, 870, 1247
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 782
AlwNI CAGNNNCTG 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 1546
AoxI GGCC 2 cut(s) 828, 1516
ApeKI GCWGC 8 cut(s) 31, 113, 326, 425, 527, 629, 673, 1244
ApoI RAATTY 2 cut(s) 772, 884
Asp700I GAANNNNTTC 1 cut(s) 1696
AspA2I CCTAGG 1 cut(s) 874
AspLEI GCGC 3 cut(s) 481, 943, 1144
AspS9I GGNCC 4 cut(s) 395, 1111, 1208, 1367
AsuC2I CCSGG 1 cut(s) 1185
AsuHPI GGTGA 4 cut(s) 449, 965, 1100, 1384
AsuNHI GCTAGC 1 cut(s) 481
AvaII GGWCC 4 cut(s) 395, 1111, 1208, 1367
AvrII CCTAGG 1 cut(s) 874
BalI TGGCCA 1 cut(s) 1518
BanI GGYRCC 1 cut(s) 1523
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 8 cut(s) 43, 100, 313, 437, 514, 616, 685, 1256
BccI CCATC 4 cut(s) 391, 855, 907, 1014
BceAI ACGGC 1 cut(s) 832
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciT130I CCWGG 3 cut(s) 137, 276, 1217
BcnI CCSGG 1 cut(s) 1185
BcoDI GTCTC 1 cut(s) 461
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 5 cut(s) 378, 482, 875, 900, 1557
BfmI CTRYAG 2 cut(s) 29, 1034
BfoI RGCGCY 1 cut(s) 482
BglII AGATCT 1 cut(s) 1670
BlnI CCTAGG 1 cut(s) 874
BlpI GCTNAGC 1 cut(s) 1357
Bme1390I CCNGG 4 cut(s) 137, 276, 1185, 1217
Bme18I GGWCC 4 cut(s) 395, 1111, 1208, 1367
BmeRI GACNNNNNGTC 1 cut(s) 1096
BmgBI CACGTC 1 cut(s) 83
BmgT120I GGNCC 4 cut(s) 395, 1111, 1208, 1367
BmiI GGNNCC 3 cut(s) 397, 1368, 1525
BmrFI CCNGG 4 cut(s) 137, 276, 1185, 1217
BmsI GCATC 1 cut(s) 289
BmtI GCTAGC 1 cut(s) 485
BoxI GACNNNNGTC 1 cut(s) 1036
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 1357
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 1185
BsaWI WCCGGW 2 cut(s) 1546, 1641
Bsc4I CCNNNNNNNGG 2 cut(s) 880, 1217
Bse118I RCCGGY 2 cut(s) 1169, 1433
Bse1I ACTGG 4 cut(s) 172, 570, 617, 1293
Bse3DI GCAATG 3 cut(s) 420, 733, 1419
BseAI TCCGGA 1 cut(s) 1546
BseBI CCWGG 3 cut(s) 137, 276, 1217
BseGI GGATG 3 cut(s) 383, 1460, 1543
BseLI CCNNNNNNNGG 2 cut(s) 880, 1217
BseMI GCAATG 3 cut(s) 420, 733, 1419
BseMII CTCAG 3 cut(s) 78, 255, 321
BseNI ACTGG 4 cut(s) 172, 570, 617, 1293
BseRI GAGGAG 1 cut(s) 994
BseX3I CGGCCG 1 cut(s) 828
BseXI GCAGC 8 cut(s) 43, 100, 313, 437, 514, 616, 685, 1256
Bsh1236I CGCG 2 cut(s) 941, 1478
Bsh1285I CGRYCG 2 cut(s) 831, 970
BshFI GGCC 2 cut(s) 830, 1518
BshNI GGYRCC 1 cut(s) 1523
BsiEI CGRYCG 2 cut(s) 831, 970
BsiHKAI GWGCWC 1 cut(s) 614
BsiSI CCGG 7 cut(s) 124, 831, 1170, 1185, 1434, 1547, 1642
BslFI GGGAC 3 cut(s) 351, 1166, 1380
BslI CCNNNNNNNGG 2 cut(s) 880, 1217
BsmAI GTCTC 1 cut(s) 461
BsmBI CGTCTC 1 cut(s) 461
BsmFI GGGAC 3 cut(s) 351, 1166, 1380
BsmI GAATGC 2 cut(s) 917, 1424
BsnI GGCC 2 cut(s) 830, 1518
Bsp1286I GDGCHC 1 cut(s) 614
Bsp13I TCCGGA 1 cut(s) 1546
Bsp143I GATC 4 cut(s) 429, 787, 967, 1670
Bsp1720I GCTNAGC 1 cut(s) 1357
Bsp19I CCATGG 2 cut(s) 791, 1404
Bsp68I TCGCGA 1 cut(s) 1478
BspACI CCGC 8 cut(s) 20, 45, 68, 229, 1167, 1379, 1564, 1567
BspANI GGCC 2 cut(s) 830, 1518
BspCNI CTCAG 3 cut(s) 79, 256, 322
BspEI TCCGGA 1 cut(s) 1546
BspFNI CGCG 2 cut(s) 941, 1478
BspLI GGNNCC 3 cut(s) 397, 1368, 1525
BspMAI CTGCAG 1 cut(s) 33
BspOI GCTAGC 1 cut(s) 485
BspPI GGATC 1 cut(s) 782
BspT107I GGYRCC 1 cut(s) 1523
BsrBI CCGCTC 1 cut(s) 45
BsrDI GCAATG 3 cut(s) 420, 733, 1419
BsrFI RCCGGY 2 cut(s) 1169, 1433
BsrI ACTGG 4 cut(s) 172, 570, 617, 1293
BssAI RCCGGY 2 cut(s) 1169, 1433
BssMI GATC 4 cut(s) 429, 787, 967, 1670
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 4 cut(s) 391, 791, 874, 1404
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 3 cut(s) 137, 276, 1217
Bst4CI ACNGT 9 cut(s) 437, 698, 1038, 1156, 1180, 1348, 1396, 1523, 1610
BstC8I GCNNGC 5 cut(s) 17, 166, 304, 483, 1171
BstDEI CTNAG 6 cut(s) 87, 192, 264, 330, 797, 1357
BstDSI CCRYGG 4 cut(s) 791, 974, 1404, 1519
BstEII GGTNACC 1 cut(s) 1088
BstF5I GGATG 3 cut(s) 383, 1460, 1543
BstFNI CGCG 2 cut(s) 941, 1478
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 3 cut(s) 481, 943, 1144
BstKTI GATC 4 cut(s) 432, 790, 970, 1673
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 4 cut(s) 429, 787, 967, 1670
BstMCI CGRYCG 2 cut(s) 831, 970
BstMWI GCNNNNNNNGC 6 cut(s) 28, 299, 876, 1148, 1409, 1484
BstNI CCWGG 3 cut(s) 137, 276, 1217
BstNSI RCATGY 3 cut(s) 168, 1663, 1682
BstPAI GACNNNNGTC 1 cut(s) 1036
BstPI GGTNACC 1 cut(s) 1088
BstSCI CCNGG 4 cut(s) 135, 274, 1183, 1215
BstSFI CTRYAG 2 cut(s) 29, 1034
BstUI CGCG 2 cut(s) 941, 1478
BstV1I GCAGC 8 cut(s) 43, 100, 313, 437, 514, 616, 685, 1256
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 787, 1670
BstYI RGATCY 2 cut(s) 787, 1670
BstZI CGGCCG 1 cut(s) 828
BsuRI GGCC 2 cut(s) 830, 1518
BtgI CCRYGG 4 cut(s) 791, 974, 1404, 1519
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 3 cut(s) 383, 1460, 1543
BtsI GCAGTG 2 cut(s) 231, 582
BtsIMutI CAGTG 4 cut(s) 231, 582, 898, 1176
BtuMI TCGCGA 1 cut(s) 1478
Cac8I GCNNGC 5 cut(s) 17, 166, 304, 483, 1171
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 3 cut(s) 481, 943, 1144
Cfr10I RCCGGY 2 cut(s) 1169, 1433
Cfr13I GGNCC 4 cut(s) 395, 1111, 1208, 1367
Csp6I GTAC 5 cut(s) 286, 665, 1310, 1349, 1399
CspCI CAANNNNNGTGG 2 cut(s) 1401, 1436
CviQI GTAC 5 cut(s) 286, 665, 1310, 1349, 1399
DdeI CTNAG 6 cut(s) 87, 192, 264, 330, 797, 1357
DpnI GATC 4 cut(s) 431, 789, 969, 1672
DpnII GATC 4 cut(s) 429, 787, 967, 1670
DriI GACNNNNNGTC 1 cut(s) 1096
EaeI YGGCCR 2 cut(s) 828, 1516
EagI CGGCCG 1 cut(s) 828
Eam1105I GACNNNNNGTC 1 cut(s) 1096
EclXI CGGCCG 1 cut(s) 828
Eco130I CCWWGG 4 cut(s) 391, 791, 874, 1404
Eco47I GGWCC 4 cut(s) 395, 1111, 1208, 1367
Eco52I CGGCCG 1 cut(s) 828
Eco57I CTGAAG 1 cut(s) 689
Eco91I GGTNACC 1 cut(s) 1088
EcoO109I RGGNCCY 2 cut(s) 395, 1111
EcoO65I GGTNACC 1 cut(s) 1088
EcoRI GAATTC 1 cut(s) 884
EcoRII CCWGG 3 cut(s) 135, 274, 1215
EcoT14I CCWWGG 4 cut(s) 391, 791, 874, 1404
ErhI CCWWGG 4 cut(s) 391, 791, 874, 1404
Esp3I CGTCTC 1 cut(s) 461
FaqI GGGAC 3 cut(s) 351, 1166, 1380
FauNDI CATATG 2 cut(s) 522, 1372
FokI GGATG 3 cut(s) 370, 1467, 1530
FspBI CTAG 5 cut(s) 378, 482, 875, 900, 1557
GlaI GCGC 3 cut(s) 480, 942, 1143
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 2 cut(s) 830, 1518
HapII CCGG 7 cut(s) 124, 831, 1170, 1185, 1434, 1547, 1642
HhaI GCGC 3 cut(s) 481, 943, 1144
Hin6I GCGC 3 cut(s) 479, 941, 1142
HinP1I GCGC 3 cut(s) 479, 941, 1142
HinfI GANTC 8 cut(s) 511, 824, 896, 903, 1097, 1121, 1285, 1473
HpaII CCGG 7 cut(s) 124, 831, 1170, 1185, 1434, 1547, 1642
HphI GGTGA 4 cut(s) 449, 965, 1100, 1384
Hpy166II GTNNAC 5 cut(s) 582, 712, 1202, 1312, 1399
Hpy188I TCNGA 3 cut(s) 180, 865, 1702
Hpy188III TCNNGA 9 cut(s) 156, 782, 900, 1236, 1252, 1477, 1547, 1574, 1668
Hpy8I GTNNAC 5 cut(s) 582, 712, 1202, 1312, 1399
HpyAV CCTTC 9 cut(s) 137, 190, 497, 501, 743, 1326, 1330, 1470, 1537
HpyCH4III ACNGT 9 cut(s) 437, 698, 1038, 1156, 1180, 1348, 1396, 1523, 1610
HpyCH4IV ACGT 3 cut(s) 82, 498, 543
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 299, 876, 1148, 1409, 1484
HpyF3I CTNAG 6 cut(s) 87, 192, 264, 330, 797, 1357
HpySE526I ACGT 3 cut(s) 82, 498, 543
HspAI GCGC 3 cut(s) 479, 941, 1142
Kpn2I TCCGGA 1 cut(s) 1546
KroI GCCGGC 1 cut(s) 1169
KroNI GCCGGC 1 cut(s) 1171
Kzo9I GATC 4 cut(s) 429, 787, 967, 1670
Lsp1109I GCAGC 8 cut(s) 43, 100, 313, 437, 514, 616, 685, 1256
LweI GCATC 1 cut(s) 289
MaeI CTAG 5 cut(s) 378, 482, 875, 900, 1557
MaeII ACGT 3 cut(s) 82, 498, 543
MaeIII GTNAC 4 cut(s) 572, 1088, 1156, 1429
MalI GATC 4 cut(s) 431, 789, 969, 1672
MbiI CCGCTC 1 cut(s) 45
MboI GATC 4 cut(s) 429, 787, 967, 1670
MboII GAAGA 6 cut(s) 198, 281, 455, 797, 1501, 1532
MfeI CAATTG 2 cut(s) 347, 549
MflI RGATCY 2 cut(s) 787, 1670
MhlI GDGCHC 1 cut(s) 614
MlsI TGGCCA 1 cut(s) 1518
MluNI TGGCCA 1 cut(s) 1518
MlyI GAGTC 5 cut(s) 505, 912, 1106, 1294, 1467
Mox20I TGGCCA 1 cut(s) 1518
MroI TCCGGA 1 cut(s) 1546
MroNI GCCGGC 1 cut(s) 1169
MroXI GAANNNNTTC 1 cut(s) 1696
MscI TGGCCA 1 cut(s) 1518
MseI TTAA 5 cut(s) 252, 407, 812, 1604, 1649
MslI CAYNNNNRTG 2 cut(s) 81, 243
Msp20I TGGCCA 1 cut(s) 1518
MspI CCGG 7 cut(s) 124, 831, 1170, 1185, 1434, 1547, 1642
MspR9I CCNGG 4 cut(s) 137, 276, 1185, 1217
MunI CAATTG 2 cut(s) 347, 549
Mva1269I GAATGC 2 cut(s) 917, 1424
MvaI CCWGG 3 cut(s) 137, 276, 1217
MvnI CGCG 2 cut(s) 941, 1478
MwoI GCNNNNNNNGC 6 cut(s) 28, 299, 876, 1148, 1409, 1484
NaeI GCCGGC 1 cut(s) 1171
NciI CCSGG 1 cut(s) 1185
NcoI CCATGG 2 cut(s) 791, 1404
NdeI CATATG 2 cut(s) 522, 1372
NdeII GATC 4 cut(s) 429, 787, 967, 1670
NgoMIV GCCGGC 1 cut(s) 1169
NheI GCTAGC 1 cut(s) 481
NlaIV GGNNCC 3 cut(s) 397, 1368, 1525
NmuCI GTSAC 2 cut(s) 572, 1088
NruI TCGCGA 1 cut(s) 1478
NspI RCATGY 3 cut(s) 168, 1663, 1682
OliI CACNNNNGTG 1 cut(s) 81
PaeI GCATGC 1 cut(s) 168
PasI CCCWGGG 1 cut(s) 275
PciI ACATGT 2 cut(s) 1659, 1678
PctI GAATGC 2 cut(s) 917, 1424
PdiI GCCGGC 1 cut(s) 1171
PdmI GAANNNNTTC 1 cut(s) 1696
PfeI GAWTC 3 cut(s) 824, 896, 1121
PflFI GACNNNGTC 1 cut(s) 1006
Ple19I CGATCG 1 cut(s) 970
PleI GAGTC 5 cut(s) 505, 911, 1105, 1293, 1467
PpsI GAGTC 5 cut(s) 505, 911, 1105, 1293, 1467
PpuMI RGGWCCY 2 cut(s) 395, 1111
PscI ACATGT 2 cut(s) 1659, 1678
PshAI GACNNNNGTC 1 cut(s) 1036
Psp1406I AACGTT 1 cut(s) 543
Psp5II RGGWCCY 2 cut(s) 395, 1111
Psp6I CCWGG 3 cut(s) 135, 274, 1215
PspEI GGTNACC 1 cut(s) 1088
PspGI CCWGG 3 cut(s) 135, 274, 1215
PspN4I GGNNCC 3 cut(s) 397, 1368, 1525
PspPI GGNCC 4 cut(s) 395, 1111, 1208, 1367
PspPPI RGGWCCY 2 cut(s) 395, 1111
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 787, 1670
PsyI GACNNNGTC 1 cut(s) 1006
PvuI CGATCG 1 cut(s) 970
RruI TCGCGA 1 cut(s) 1478
RsaI GTAC 5 cut(s) 287, 666, 1311, 1350, 1400
RsaNI GTAC 5 cut(s) 286, 665, 1310, 1349, 1399
RseI CAYNNNNRTG 2 cut(s) 81, 243
SaqAI TTAA 5 cut(s) 252, 407, 812, 1604, 1649
Sau3AI GATC 4 cut(s) 429, 787, 967, 1670
Sau96I GGNCC 4 cut(s) 395, 1111, 1208, 1367
SchI GAGTC 5 cut(s) 505, 912, 1106, 1294, 1467
ScrFI CCNGG 4 cut(s) 137, 276, 1185, 1217
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 2 cut(s) 29, 1034
SinI GGWCC 4 cut(s) 395, 1111, 1208, 1367
SmiMI CAYNNNNRTG 2 cut(s) 81, 243
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SpeI ACTAGT 1 cut(s) 377
SphI GCATGC 1 cut(s) 168
SsiI CCGC 8 cut(s) 20, 45, 68, 229, 1167, 1379, 1564, 1567
SspMI CTAG 5 cut(s) 378, 482, 875, 900, 1557
StyD4I CCNGG 4 cut(s) 135, 274, 1183, 1215
StyI CCWWGG 4 cut(s) 391, 791, 874, 1404
TaaI ACNGT 9 cut(s) 437, 698, 1038, 1156, 1180, 1348, 1396, 1523, 1610
TaiI ACGT 3 cut(s) 85, 501, 546
TaqI TCGA 4 cut(s) 366, 702, 906, 1074
TaqII GACCGA 1 cut(s) 1107
TatI WGTACW 2 cut(s) 285, 664
TauI GCSGC 6 cut(s) 22, 48, 71, 1169, 1382, 1567
TfiI GAWTC 3 cut(s) 824, 896, 1121
Tru1I TTAA 5 cut(s) 252, 407, 812, 1604, 1649
Tru9I TTAA 5 cut(s) 252, 407, 812, 1604, 1649
TscAI CASTG 4 cut(s) 231, 589, 898, 1183
TseFI GTSAC 2 cut(s) 572, 1088
TseI GCWGC 8 cut(s) 31, 113, 326, 425, 527, 629, 673, 1244
Tsp45I GTSAC 2 cut(s) 572, 1088
TspDTI ATGAA 8 cut(s) 456, 509, 611, 725, 777, 877, 950, 1532
TspGWI ACGGA 4 cut(s) 93, 485, 963, 980
TspRI CASTG 4 cut(s) 231, 589, 898, 1183
Tth111I GACNNNGTC 1 cut(s) 1006
VpaK11BI GGWCC 4 cut(s) 395, 1111, 1208, 1367
XapI RAATTY 2 cut(s) 772, 884
XbaI TCTAGA 1 cut(s) 899
XceI RCATGY 3 cut(s) 168, 1663, 1682
XcmI CCANNNNNNNNNTGG 1 cut(s) 1411
XmaJI CCTAGG 1 cut(s) 874
XmnI GAANNNNTTC 1 cut(s) 1696
XspI CTAG 5 cut(s) 378, 482, 875, 900, 1557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.