MD15G1231900.v1.1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000489
Physical Location & Seq
Reverse (-)
18947032 .. 18947548
517 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1231900.v1.1.491

Sequence Viewer

Length: 474 bp
ATGGGTCACACTTCAATTGTGAAATCCTTACTAGCAGCTGATAAATCCGCCGCCTACATCGGCGACAATGAGAAGGTTACACCTCTTCACGTTGCAGCACTCGGAGGCCATGCAGACGTAATGAAAGAGCTTATTGCCTGTTGCCCTGATTGTTGCGAACTGGTGGACAGGCGCCGTCGCGACGCTCTTCACTTCTGCATTAGGAAGCGTCATCATCAAGTAGAGCAACTTGTGAGACAAGATCCATGGCTCAGCAACGTCCTTTTGAATGGCAAAGACGAAGATGGGAACACACCCCTCCATCTTATGGCTTACGCTTGGTACAACAACGCTGGGTTCATACGTGATGCTAGGGTTGATAAGATGACATTCAACAAGGAAAATCTCAACGCTCTTAACATCGTTCAAGCTTTGCCTTATTCAGAACAACAAGTATGGACAGCACATCATTCCCCTTGTGATATAAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

158

Amino Acids

17.66

Weight (kDa)

6.48

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 2 - 78 2.1e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 307
AccII CGCG 1 cut(s) 180
AciI CCGC 2 cut(s) 48, 51
AclWI GGATC 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 4 cut(s) 15, 268, 373, 407
AluBI AGCT 3 cut(s) 38, 130, 410
AluI AGCT 3 cut(s) 38, 130, 410
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 35, 95
AspLEI GCGC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 47, 107
BccI CCATC 2 cut(s) 278, 309
BceAI ACGGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 2 cut(s) 32, 351
BfoI RGCGCY 1 cut(s) 175
BisI GCNGC 3 cut(s) 36, 51, 96
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 3 cut(s) 37, 52, 97
BmiI GGNNCC 1 cut(s) 173
BmsI GCATC 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 265
BseNI ACTGG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 47, 107
BseYI CCCAGC 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 229
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 241
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 245
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 2 cut(s) 48, 51
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 264
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 245
Bst6I CTCTTC 2 cut(s) 90, 192
BstACI GRCGYC 1 cut(s) 172
BstBAI YACGTR 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 241
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 47, 107
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 245
BtuMI TCGCGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 174
CseI GACGC 2 cut(s) 191, 197
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 110, 246
CviJI RGCY 6 cut(s) 38, 108, 130, 250, 311, 410
CviKI_1 RGCY 6 cut(s) 38, 108, 130, 250, 311, 410
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 251
DinI GGCGCC 1 cut(s) 173
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 90, 192
EarI CTCTTC 2 cut(s) 90, 192
EciI GGCGGA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 245
EgeI GGCGCC 1 cut(s) 173
EheI GGCGCC 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 113, 249
FaiI YATR 6 cut(s) 111, 247, 308, 341, 436, 464
FatI CATG 2 cut(s) 109, 245
Fnu4HI GCNGC 3 cut(s) 36, 51, 96
Fsp4HI GCNGC 3 cut(s) 36, 51, 96
FspBI CTAG 2 cut(s) 32, 351
GlaI GCGC 1 cut(s) 173
GluI GCNGC 3 cut(s) 36, 51, 96
GsaI CCCAGC 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 2 cut(s) 191, 197
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 2 cut(s) 113, 249
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 408
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 104, 424
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 2 cut(s) 180, 185
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 4 cut(s) 90, 117, 258, 343
HpyCH4V TGCA 3 cut(s) 95, 113, 198
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 4 cut(s) 90, 117, 258, 343
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 2 cut(s) 113, 249
HspAI GCGC 1 cut(s) 172
KasI GGCGCC 1 cut(s) 171
Kzo9I GATC 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 146, 151, 154, 159, 318
Lsp1109I GCAGC 2 cut(s) 47, 107
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 32, 351
MaeII ACGT 4 cut(s) 90, 117, 258, 343
MaeIII GTNAC 2 cut(s) 5, 76
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 3 cut(s) 77, 179, 293
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 241
MluCI AATT 1 cut(s) 15
Mly113I GGCGCC 1 cut(s) 172
MnlI CCTC 3 cut(s) 93, 98, 308
MseI TTAA 2 cut(s) 396, 472
MspA1I CMGCKG 1 cut(s) 38
MunI CAATTG 1 cut(s) 15
MvnI CGCG 1 cut(s) 180
NarI GGCGCC 1 cut(s) 172
NcoI CCATGG 1 cut(s) 245
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 113, 249
NlaIV GGNNCC 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 5
NruI TCGCGA 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 3 cut(s) 37, 52, 97
PluTI GGCGCC 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 344
PspFI CCCAGC 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 38
RruI TCGCGA 1 cut(s) 180
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 396, 472
SatI GCNGC 3 cut(s) 36, 51, 96
Sau3AI GATC 1 cut(s) 241
SetI ASST 9 cut(s) 40, 78, 85, 93, 120, 132, 261, 346, 412
SfaNI GCATC 1 cut(s) 337
SfoI GGCGCC 1 cut(s) 173
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 48, 51
SspDI GGCGCC 1 cut(s) 171
SspMI CTAG 2 cut(s) 32, 351
StyI CCWWGG 1 cut(s) 245
TaiI ACGT 4 cut(s) 93, 120, 261, 346
TasI AATT 1 cut(s) 15
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 2 cut(s) 396, 472
Tru9I TTAA 2 cut(s) 396, 472
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 2 cut(s) 35, 95
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 137, 328
Van91I CCANNNNNTGG 1 cut(s) 307
XspI CTAG 2 cut(s) 32, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.