pycom08g18280

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
18532675 .. 18533292
618 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18280.1

Sequence Viewer

Length: 618 bp
ATGACAAGAAAACTTCTGGATGCAAACTGGACCTTGACTAAAGAAGTAGATGAACAAGGGTGGACAGCGCTACACTATGCTGCAGATATCGGTGACGCTTCCATTGTGAAGCAGCTACTACAGTTTGATAAATCTTCTGCCTACATTTCTGACAAAGAGGGGAAGAAGACGGCTCTTCACGTTGCAGCTGGCCGAGGCCATGCTAAAGTAATGAAGGAGCTTCTTTCAAACTGCCCAGATTGTTTTGAACTGGTAGACAATAGAGGGTGGAATGTTCTTCACTTTTCCGTTGAAAGCAATAGTAACGACGCCGTCAAACTAGTCCTAGAAAATTCATTGCTTAGCAACCTTATAAATGAGAAAGATGCCGAAGGGAACACACCTCTCCACTACGCTGCTGCTTCCCTCTCATGCATATCCTCTTTCATTCATCACCCTAAAGTTGATTTTATGGCCTATAACAAGCAAAACCTGAGTGCTCTAGACATTGTTTTAGCCAATGGTAGTTCCTCAGAGATGAAGGTACGTACGTCCTCCATTAAAATCCTTGTTTGCAAAAAACAGAAACACACACACACACACACATCATTTTTCAGAATGAGTATCGATCTAAATTAA
Functional Annotation

Protein Analysis

206

Amino Acids

22.79

Weight (kDa)

7.15

Isoelectric Point (pI)

24.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 13 - 77 1.6e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 31 - 111 1.5e-12 Ankyrin repeats (3 copies)
Ank_2 PF12796 84 - 143 3.6e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AccI GTMKAC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 525, 529
AfeI AGCGCT 1 cut(s) 69
AgsI TTSAA 3 cut(s) 228, 248, 293
AhlI ACTAGT 1 cut(s) 319
AluBI AGCT 3 cut(s) 115, 188, 220
AluI AGCT 3 cut(s) 115, 188, 220
Alw21I GWGCWC 1 cut(s) 481
Aor51HI AGCGCT 1 cut(s) 69
AoxI GGCC 3 cut(s) 190, 196, 453
ApeKI GCWGC 5 cut(s) 80, 112, 185, 395, 398
ApoI RAATTY 1 cut(s) 331
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 104, 425
AvaII GGWCC 1 cut(s) 30
BaeI ACNNNNGTAYC 2 cut(s) 515, 548
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 5 cut(s) 67, 124, 197, 382, 385
BceAI ACGGC 2 cut(s) 186, 296
BcuI ACTAGT 1 cut(s) 319
BfaI CTAG 3 cut(s) 320, 326, 482
BfmI CTRYAG 2 cut(s) 81, 119
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 5 cut(s) 81, 113, 186, 396, 399
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 5 cut(s) 82, 114, 187, 397, 400
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 30
BmsI GCATC 2 cut(s) 10, 355
BpiI GAAGAC 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 606
BsaAI YACGTR 1 cut(s) 527
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 32, 255
Bse3DI GCAATG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 2 cut(s) 464, 525
BseNI ACTGG 2 cut(s) 32, 255
BseXI GCAGC 5 cut(s) 67, 124, 197, 382, 385
BshFI GGCC 3 cut(s) 192, 198, 455
BshVI ATCGAT 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 481
BsiWI CGTACG 1 cut(s) 527
BsnI GGCC 3 cut(s) 192, 198, 455
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 1 cut(s) 607
Bsp1720I GCTNAGC 1 cut(s) 341
BspANI GGCC 3 cut(s) 192, 198, 455
BspCNI CTCAG 2 cut(s) 465, 524
BspDI ATCGAT 1 cut(s) 606
BspMAI CTGCAG 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 2 cut(s) 32, 255
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 607
BssNI GRCGYC 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 341, 473, 511
BstF5I GGATG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 1 cut(s) 610
BstMBI GATC 1 cut(s) 607
BstSFI CTRYAG 2 cut(s) 81, 119
BstSNI TACGTA 1 cut(s) 527
BstV1I GCAGC 5 cut(s) 67, 124, 197, 382, 385
BstV2I GAAGAC 1 cut(s) 173
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 3 cut(s) 192, 198, 455
BsuTUI ATCGAT 1 cut(s) 606
BtsCI GGATG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 190
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 30
ClaI ATCGAT 1 cut(s) 606
CseI GACGC 2 cut(s) 104, 317
Csp6I GTAC 2 cut(s) 524, 528
CviAII CATG 2 cut(s) 200, 411
CviJI RGCY 8 cut(s) 115, 173, 188, 192, 198, 220, 455, 497
CviKI_1 RGCY 8 cut(s) 115, 173, 188, 192, 198, 220, 455, 497
CviQI GTAC 2 cut(s) 524, 528
DdeI CTNAG 3 cut(s) 341, 473, 511
DpnI GATC 1 cut(s) 609
DpnII GATC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco105I TACGTA 1 cut(s) 527
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 30
Eco47III AGCGCT 1 cut(s) 69
EcoRV GATATC 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 416
FaeI CATG 2 cut(s) 203, 414
FaiI YATR 7 cut(s) 78, 201, 353, 412, 416, 452, 459
FatI CATG 2 cut(s) 199, 410
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 5 cut(s) 81, 113, 186, 396, 399
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 5 cut(s) 81, 113, 186, 396, 399
FspBI CTAG 3 cut(s) 320, 326, 482
GlaI GCGC 1 cut(s) 69
GluI GCNGC 5 cut(s) 81, 113, 186, 396, 399
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 3 cut(s) 192, 198, 455
HgaI GACGC 2 cut(s) 104, 317
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 2 cut(s) 203, 414
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HphI GGTGA 2 cut(s) 104, 425
Hpy166II GTNNAC 2 cut(s) 63, 256
Hpy188I TCNGA 3 cut(s) 151, 514, 596
Hpy188III TCNNGA 2 cut(s) 17, 482
Hpy8I GTNNAC 2 cut(s) 63, 256
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 208, 365, 514
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4IV ACGT 3 cut(s) 180, 526, 530
HpyCH4V TGCA 5 cut(s) 23, 83, 185, 414, 555
HpyF3I CTNAG 3 cut(s) 341, 473, 511
HpySE526I ACGT 3 cut(s) 180, 526, 530
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 2 cut(s) 203, 414
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 607
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 6 cut(s) 2, 13, 174, 236, 249, 485
Lsp1109I GCAGC 5 cut(s) 67, 124, 197, 382, 385
LweI GCATC 2 cut(s) 10, 355
MaeI CTAG 3 cut(s) 320, 326, 482
MaeII ACGT 3 cut(s) 180, 526, 530
MaeIII GTNAC 2 cut(s) 92, 302
MalI GATC 1 cut(s) 609
MboI GATC 1 cut(s) 607
MboII GAAGA 5 cut(s) 126, 167, 175, 178, 269
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 2 cut(s) 331, 613
MnlI CCTC 8 cut(s) 151, 188, 257, 393, 416, 430, 520, 544
Mph1103I ATGCAT 1 cut(s) 416
MseI TTAA 2 cut(s) 540, 616
MspA1I CMGCKG 1 cut(s) 188
NdeII GATC 1 cut(s) 607
NlaIII CATG 2 cut(s) 203, 414
NmeAIII GCCGAG 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 180
Pfl23II CGTACG 1 cut(s) 527
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 5 cut(s) 82, 114, 187, 397, 400
Ppu21I YACGTR 1 cut(s) 527
PsiI TTATAA 1 cut(s) 353
PspLI CGTACG 1 cut(s) 527
PspPI GGNCC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 525, 529
RsaNI GTAC 2 cut(s) 524, 528
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 540, 616
SatI GCNGC 5 cut(s) 81, 113, 186, 396, 399
Sau3AI GATC 1 cut(s) 607
Sau96I GGNCC 1 cut(s) 30
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 2 cut(s) 10, 355
SfcI CTRYAG 2 cut(s) 81, 119
SinI GGWCC 1 cut(s) 30
SnaBI TACGTA 1 cut(s) 527
SpeI ACTAGT 1 cut(s) 319
Sse9I AATT 2 cut(s) 331, 613
SspMI CTAG 3 cut(s) 320, 326, 482
TaaI ACNGT 1 cut(s) 123
TaiI ACGT 3 cut(s) 183, 529, 533
TaqI TCGA 1 cut(s) 606
TasI AATT 2 cut(s) 331, 613
Tru1I TTAA 2 cut(s) 540, 616
Tru9I TTAA 2 cut(s) 540, 616
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 5 cut(s) 80, 112, 185, 395, 398
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 6 cut(s) 66, 227, 324, 415, 419, 533
TspGWI ACGGA 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 30
XapI RAATTY 1 cut(s) 331
XbaI TCTAGA 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 3 cut(s) 320, 326, 482
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.