Rmu_sc0002425.1_g000003

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002425.1
OG0000489
Physical Location & Seq
Forward (+)
21492 .. 22683
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002425.1_g000003.1.cds

Sequence Viewer

Length: 666 bp
atggatactaaggtgttcaaggcggcgcaagagggcaatgttgatgccattagagaacatagtgaccatcttcaccaaatgttgactccaaccaaatccacagtcctccatgtctatattgcatgcgtaggcagtgtaaagttgaccaagtctgaagaattgctaaagtcagccgaggttgtaagggagatgctcaaaatgtcccagcggctactattacagccaaacgagagcgtgcggttcaatcaccttgatgtggttaagatattgattagagaagacccggagtttctatactctactaatgatgctggggaaactccactctacatggcttctgagaggggatatcgtgatttggtttttgaaatgctcgacacttgcatgaatccatcataccaaggacccgatggtttaacagctttagagattgcagctacctacggtgatgaaaaatacatcaagcttcaaaggcttggtcataatatcagccacttgatcactcgtgccacaatgaaccaagttcaccacctccttcttcgtaagatccctcaagaaatgaaacctcacgtctatatgtttgcttcttccatgcatgaccagatttttggacagtttgatcgtcgaactgttatcacacattatggtggtgcatttgtcttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

221

Amino Acids

25.3

Weight (kDa)

6.45

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 208, 238
AclWI GGATC 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 4 cut(s) 19, 244, 368, 470
AjiI CACGTC 1 cut(s) 571
AluBI AGCT 3 cut(s) 422, 437, 466
AluI AGCT 3 cut(s) 422, 437, 466
AlwI GGATC 1 cut(s) 541
ApeKI GCWGC 1 cut(s) 434
ArsI GACNNNNNNTTYG 6 cut(s) 87, 119, 463, 495, 590, 622
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 404
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 4 cut(s) 65, 239, 458, 518
AvaII GGWCC 1 cut(s) 404
BaeI ACNNNNGTAYC 1 cut(s) 30
BauI CACGAG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 446
BccI CCATC 3 cut(s) 75, 400, 404
BclI TGATCA 1 cut(s) 498
BcnI CCSGG 1 cut(s) 284
BisI GCNGC 3 cut(s) 24, 209, 435
BlsI GCNGC 3 cut(s) 25, 210, 436
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 3 cut(s) 34, 180, 298
BpiI GAAGAC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 174, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 174, 400
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 446
BseYI CCCAGC 2 cut(s) 204, 311
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 498, 546, 619
BspACI CCGC 3 cut(s) 23, 208, 238
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 174, 400
BssMI GATC 3 cut(s) 498, 546, 619
BssSI CACGAG 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 504
Bst4CI ACNGT 4 cut(s) 103, 446, 615, 631
BstC8I GCNNGC 2 cut(s) 124, 236
BstDEI CTNAG 2 cut(s) 9, 339
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 3 cut(s) 501, 549, 622
BstMBI GATC 3 cut(s) 498, 546, 619
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 446
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 1 cut(s) 546
BtrI CACGTC 1 cut(s) 571
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 124, 236
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 404
CviAII CATG 6 cut(s) 110, 123, 331, 385, 592, 596
CviJI RGCY 9 cut(s) 173, 211, 223, 335, 422, 437, 466, 475, 492
CviKI_1 RGCY 9 cut(s) 173, 211, 223, 335, 422, 437, 466, 475, 492
DdeI CTNAG 2 cut(s) 9, 339
DpnI GATC 3 cut(s) 500, 548, 621
DpnII GATC 3 cut(s) 498, 546, 619
Eco130I CCWWGG 1 cut(s) 400
Eco32I GATATC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 404
EcoRV GATATC 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 6 cut(s) 113, 126, 334, 388, 595, 599
FaqI GGGAC 1 cut(s) 187
FatI CATG 6 cut(s) 109, 122, 330, 384, 591, 595
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 3 cut(s) 24, 209, 435
Fsp4HI GCNGC 3 cut(s) 24, 209, 435
GlaI GCGC 1 cut(s) 27
GluI GCNGC 3 cut(s) 24, 209, 435
GsaI CCCAGC 2 cut(s) 208, 315
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 28
Hin1II CATG 6 cut(s) 113, 126, 334, 388, 595, 599
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 2 cut(s) 84, 144
HindII GTYRAC 2 cut(s) 84, 144
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 2 cut(s) 85, 388
HpaII CCGG 1 cut(s) 284
HphI GGTGA 4 cut(s) 65, 239, 458, 518
Hpy166II GTNNAC 3 cut(s) 84, 144, 526
Hpy188I TCNGA 2 cut(s) 154, 340
Hpy188III TCNNGA 2 cut(s) 353, 554
Hpy8I GTNNAC 3 cut(s) 84, 144, 526
Hpy99I CGWCG 1 cut(s) 627
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 4 cut(s) 103, 446, 615, 631
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 5 cut(s) 122, 384, 434, 595, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpyF3I CTNAG 2 cut(s) 9, 339
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 6 cut(s) 113, 126, 334, 388, 595, 599
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 3 cut(s) 498, 546, 619
LpnPI CCDG 4 cut(s) 218, 297, 297, 614
Lsp1109I GCAGC 1 cut(s) 446
LweI GCATC 3 cut(s) 34, 180, 298
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 500, 548, 621
MboI GATC 3 cut(s) 498, 546, 619
MboII GAAGA 5 cut(s) 62, 167, 290, 530, 579
MflI RGATCY 1 cut(s) 546
MluCI AATT 1 cut(s) 158
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 7 cut(s) 25, 116, 169, 336, 542, 561, 576
Mph1103I ATGCAT 1 cut(s) 597
MseI TTAA 2 cut(s) 261, 416
MslI CAYNNNNRTG 3 cut(s) 252, 383, 645
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 472
NciI CCSGG 1 cut(s) 284
NdeII GATC 3 cut(s) 498, 546, 619
NlaIII CATG 6 cut(s) 113, 126, 334, 388, 595, 599
NlaIV GGNNCC 1 cut(s) 406
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 1 cut(s) 126
PaeI GCATGC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 3 cut(s) 25, 210, 436
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 404
Psp5II RGGWCCY 1 cut(s) 404
PspFI CCCAGC 2 cut(s) 204, 311
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 404
PspPPI RGGWCCY 1 cut(s) 404
PsuI RGATCY 1 cut(s) 546
PsyI GACNNNGTC 1 cut(s) 148
RseI CAYNNNNRTG 3 cut(s) 252, 383, 645
SaqAI TTAA 2 cut(s) 261, 416
SatI GCNGC 3 cut(s) 24, 209, 435
Sau3AI GATC 3 cut(s) 498, 546, 619
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 284
SfaNI GCATC 3 cut(s) 34, 180, 298
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 3 cut(s) 252, 383, 645
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
SphI GCATGC 1 cut(s) 126
Sse9I AATT 1 cut(s) 158
SsiI CCGC 3 cut(s) 23, 208, 238
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 4 cut(s) 103, 446, 615, 631
TaiI ACGT 1 cut(s) 573
TaqI TCGA 2 cut(s) 375, 625
TasI AATT 1 cut(s) 158
TauI GCSGC 2 cut(s) 26, 211
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 261, 416
Tru9I TTAA 2 cut(s) 261, 416
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 401, 465, 530, 575
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 404
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.