RLG00000016714

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
9346085 .. 9350351
4267 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016714

Sequence Viewer

Length: 711 bp
ATGGATACTAAGGTGTTCAAGGCGGCGCAAGAGGGCAATGTTGATGCCATTAGAGAACATAGTGATCATCTTCACCAAATGTTGACTCCAACCAAATCCGTAGTCCTCCATGTCTATATTGCATGCGTAGGCAGTGTAAAGTTGACCAAGTCTGAAGAATTGCTAAAGTCAACTGAGGTTGTAAGGGAGATGCTCAAAATGTCCCAGCGGCTACTATTACAGCCAAACGAGAGCGGTGATATTGCCTTACATTTGGCGGCAAGACATGGACGTGCTAACATAGTTGGCGTTCTTATTCAAGCTGCGAAAAACTGGCATGGCGACCTCGAGGAAGCCTTGCACAAGGCAGTGCGGTTCAATCACCTTGATGTGGTTAAGATATTGACTAGAGAAGACCCCGACTTTTTATACTCTACTAATGATGCTGGGGAAACTCCACTCTACATGGCTGCGGAGAGGGGATATCGCAATTTGGTTTTTGAAATGCTCGATACTTGCATGAATCCATCCTACCAAGGACCCGATGGTTTAACAGCTTTACACATTGCAGCTACCTACGGTGATGAAATTGCATTTAGAGAAGGGAATGATGGACTGCCCACATGCAAAATGCACTCCTTGTATCAGATTGTAATGGCAGAGCTTGAGAAGTTGGGTCAGAAATATCGTGTGGCTCTGAGAACCAAAGAGACACCTGTAGCTTCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

237

Amino Acids

26.38

Weight (kDa)

6.12

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 59 - 131 2.8e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 113 - 190 5.3e-11 Ankyrin repeats (3 copies)
Ank_4 PF13637 113 - 158 2.6e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 234
AciI CCGC 6 cut(s) 23, 208, 234, 257, 352, 452
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 4 cut(s) 19, 299, 358, 482
AjiI CACGTC 1 cut(s) 272
AluBI AGCT 5 cut(s) 302, 536, 551, 643, 701
AluI AGCT 5 cut(s) 302, 536, 551, 643, 701
Alw26I GTCTC 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 326
ApeKI GCWGC 3 cut(s) 302, 449, 548
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 518
AsuHPI GGTGA 4 cut(s) 65, 248, 353, 572
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 1 cut(s) 518
BaeI ACNNNNGTAYC 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 3 cut(s) 289, 436, 560
BccI CCATC 3 cut(s) 514, 518, 584
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 683
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 696
BisI GCNGC 6 cut(s) 24, 209, 258, 303, 450, 549
BlsI GCNGC 6 cut(s) 25, 210, 259, 304, 451, 550
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 520
BmsI GCATC 3 cut(s) 34, 180, 412
BpiI GAAGAC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 514
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 2 cut(s) 43, 543
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 1 cut(s) 506
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 2 cut(s) 43, 543
BseMII CTCAG 2 cut(s) 165, 668
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 3 cut(s) 289, 436, 560
BseYI CCCAGC 2 cut(s) 204, 425
BsiHKCI CYCGRG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 683
BsmFI GGGAC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 326
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 6 cut(s) 23, 208, 234, 257, 352, 452
BspCNI CTCAG 2 cut(s) 166, 669
BspLI GGNNCC 1 cut(s) 520
BsrBI CCGCTC 1 cut(s) 234
BsrDI GCAATG 2 cut(s) 43, 543
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 514
Bst4CI ACNGT 2 cut(s) 560, 708
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 3 cut(s) 9, 174, 677
BstF5I GGATG 1 cut(s) 506
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 1 cut(s) 64
BstNSI RCATGY 2 cut(s) 126, 606
BstSFI CTRYAG 1 cut(s) 696
BstV1I GCAGC 3 cut(s) 289, 436, 560
BstV2I GAAGAC 1 cut(s) 399
BtrI CACGTC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 506
BtsI GCAGTG 2 cut(s) 139, 354
BtsIMutI CAGTG 3 cut(s) 139, 354, 704
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 518
CviAII CATG 7 cut(s) 110, 123, 266, 317, 445, 499, 603
DdeI CTNAG 3 cut(s) 9, 174, 677
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 514
Eco32I GATATC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 518
EcoRV GATATC 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 7 cut(s) 113, 126, 269, 320, 448, 502, 606
FaqI GGGAC 1 cut(s) 187
FatI CATG 7 cut(s) 109, 122, 265, 316, 444, 498, 602
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 6 cut(s) 24, 209, 258, 303, 450, 549
FokI GGATG 1 cut(s) 493
Fsp4HI GCNGC 6 cut(s) 24, 209, 258, 303, 450, 549
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 27
GluI GCNGC 6 cut(s) 24, 209, 258, 303, 450, 549
GsaI CCCAGC 2 cut(s) 208, 429
HhaI GCGC 1 cut(s) 28
Hin1II CATG 7 cut(s) 113, 126, 269, 320, 448, 502, 606
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 3 cut(s) 84, 144, 171
HindII GTYRAC 3 cut(s) 84, 144, 171
HinfI GANTC 2 cut(s) 85, 502
HphI GGTGA 4 cut(s) 65, 248, 353, 572
Hpy166II GTNNAC 3 cut(s) 84, 144, 171
Hpy188I TCNGA 4 cut(s) 154, 627, 660, 678
Hpy8I GTNNAC 3 cut(s) 84, 144, 171
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 2 cut(s) 560, 708
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 7 cut(s) 122, 340, 498, 548, 572, 606, 613
HpyF3I CTNAG 3 cut(s) 9, 174, 677
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 7 cut(s) 113, 126, 269, 320, 448, 502, 606
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 3 cut(s) 218, 298, 411
Lsp1109I GCAGC 3 cut(s) 289, 436, 560
LweI GCATC 3 cut(s) 34, 180, 412
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 271
MalI GATC 1 cut(s) 66
MbiI CCGCTC 1 cut(s) 234
MboI GATC 1 cut(s) 64
MboII GAAGA 3 cut(s) 62, 167, 404
MluCI AATT 3 cut(s) 158, 469, 567
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 6 cut(s) 25, 116, 169, 322, 335, 450
MseI TTAA 2 cut(s) 375, 530
MslI CAYNNNNRTG 2 cut(s) 270, 366
MspA1I CMGCKG 1 cut(s) 208
NdeII GATC 1 cut(s) 64
NlaIII CATG 7 cut(s) 113, 126, 269, 320, 448, 502, 606
NlaIV GGNNCC 1 cut(s) 520
NspI RCATGY 2 cut(s) 126, 606
PaeI GCATGC 1 cut(s) 126
PaeR7I CTCGAG 1 cut(s) 326
PfeI GAWTC 1 cut(s) 502
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 6 cut(s) 25, 210, 259, 304, 451, 550
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 518
PspFI CCCAGC 2 cut(s) 204, 425
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 1 cut(s) 518
PspPPI RGGWCCY 1 cut(s) 518
PspXI VCTCGAGB 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 270, 366
SaqAI TTAA 2 cut(s) 375, 530
SatI GCNGC 6 cut(s) 24, 209, 258, 303, 450, 549
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 1 cut(s) 79
SfaNI GCATC 3 cut(s) 34, 180, 412
SfcI CTRYAG 1 cut(s) 696
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 518
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 270, 366
SmlI CTYRAG 2 cut(s) 326, 644
SmoI CTYRAG 2 cut(s) 326, 644
SphI GCATGC 1 cut(s) 126
Sse9I AATT 3 cut(s) 158, 469, 567
SsiI CCGC 6 cut(s) 23, 208, 234, 257, 352, 452
SspMI CTAG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 2 cut(s) 560, 708
TaiI ACGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 327, 489
TasI AATT 3 cut(s) 158, 469, 567
TauI GCSGC 3 cut(s) 26, 211, 260
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 2 cut(s) 375, 530
Tru9I TTAA 2 cut(s) 375, 530
TscAI CASTG 3 cut(s) 139, 354, 711
TseI GCWGC 3 cut(s) 302, 449, 548
TspDTI ATGAA 2 cut(s) 515, 579
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 3 cut(s) 139, 354, 711
Tth111I GACNNNGTC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 518
XceI RCATGY 2 cut(s) 126, 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XhoI CTCGAG 1 cut(s) 326
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.