Rorug05G0283500

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
32486417 .. 32486990
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0283500.1

Sequence Viewer

Length: 372 bp
ATGAGGGGTGGCATTCCCAGTGATATTGGCAATATGAGCAGCTTGATGGCCTTACACCTGGAATACAATCAATTAAGTGGACCAATTCAAACTACAATGGGAAGCCTAATGAATCTCCAAGAGTTGTACTTGAATGATAACCAACTGCAAGGGCACATGCCACATGAACTCTATCAACTAGAAAACCTATTTGACTTACTATTAGGTGATATGGATTTATCAAGCAACCATTTATCTGGGATTGCACCAGGAAGCATTGGGGGTCTTCAAGATTTGGTCAAACTCTCCTTGGCAAATAACAGTTTTGAAGGCCCTATTCCTACTTCATTTGGCAACATGCTAAGCCTGGAACTCTTTGTTGAAGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

123

Amino Acids

13.41

Weight (kDa)

4.17

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 14 - 68 1.9e-06 Leucine rich repeat
LRR_8 PF13855 71 - 117 3.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 5 cut(s) 89, 133, 269, 308, 362
AjnI CCWGG 3 cut(s) 57, 247, 345
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
AoxI GGCC 2 cut(s) 48, 310
ApeKI GCWGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 80, 311
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 3 cut(s) 59, 249, 347
BfaI CTAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 59, 249, 347
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 80, 311
BmrFI CCNGG 3 cut(s) 59, 249, 347
BmrI ACTGGG 1 cut(s) 12
BmuI ACTGGG 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 18
BseBI CCWGG 3 cut(s) 59, 249, 347
BseDI CCNNGG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 1 cut(s) 51
BshFI GGCC 2 cut(s) 50, 312
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 2 cut(s) 50, 312
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1720I GCTNAGC 1 cut(s) 341
BspANI GGCC 2 cut(s) 50, 312
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 59, 249, 347
Bst4CI ACNGT 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 3 cut(s) 59, 249, 347
BstNSI RCATGY 2 cut(s) 160, 340
BstSCI CCNGG 3 cut(s) 57, 247, 345
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 257
BstXI CCANNNNNNTGG 1 cut(s) 236
BsuRI GGCC 2 cut(s) 50, 312
BtsIMutI CAGTG 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 80, 311
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 157, 164, 337
CviJI RGCY 5 cut(s) 42, 50, 105, 312, 345
CviKI_1 RGCY 5 cut(s) 42, 50, 105, 312, 345
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 3 cut(s) 57, 247, 345
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 160, 167, 340
FaiI YATR 5 cut(s) 35, 158, 165, 212, 338
FatI CATG 3 cut(s) 156, 163, 336
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 50, 312
Hin1II CATG 3 cut(s) 160, 167, 340
HinfI GANTC 1 cut(s) 112
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 148, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 341
Hsp92II CATG 3 cut(s) 160, 167, 340
LpnPI CCDG 8 cut(s) 31, 44, 71, 222, 234, 261, 332, 359
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 1 cut(s) 179
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 71, 84
MseI TTAA 1 cut(s) 74
MspR9I CCNGG 3 cut(s) 59, 249, 347
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 3 cut(s) 59, 249, 347
MwoI GCNNNNNNNGC 1 cut(s) 36
NlaIII CATG 3 cut(s) 160, 167, 340
NspI RCATGY 2 cut(s) 160, 340
PctI GAATGC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 41
Psp6I CCWGG 3 cut(s) 57, 247, 345
PspGI CCWGG 3 cut(s) 57, 247, 345
PspPI GGNCC 2 cut(s) 80, 311
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 40
Sau96I GGNCC 2 cut(s) 80, 311
ScrFI CCNGG 3 cut(s) 59, 249, 347
SduI GDGCHC 1 cut(s) 156
SetI ASST 4 cut(s) 44, 60, 189, 208
SinI GGWCC 1 cut(s) 80
Sse9I AATT 2 cut(s) 71, 84
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 3 cut(s) 57, 247, 345
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 302
TasI AATT 2 cut(s) 71, 84
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 25
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 3 cut(s) 125, 180, 315
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 80
XceI RCATGY 2 cut(s) 160, 340
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.