Rh7DG323600

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000489
Physical Location & Seq
Forward (+)
38914362 .. 38915583
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG323600.1

Sequence Viewer

Length: 1113 bp
ATGAATCCCTCCAATTCGTCTGAGACCGAGACTGGTACTCAAGCAACACTAGTTGATCAGATCGAAATGGCAGAAACCACCGTGGCTTCCAATTCCAATTCAAACAGCCTGCAGGAATCTACAACAGGCAACTTAACAAGATATAGTGGCATGGATATTGATGTGTTCATAGCCGCACGAGAAGGCAATATTGATGCCCTAAGAGAGCATAGACTGCATCTTCACCAGATGTTGACTCCAACCGACAACACAGTCCTCCATATTTATATAGCATGTGTTGGCAGTGCAACAATATTGACCAAATCTGATGAAGAAGTGTTGAAGTCTACGAACATCGTGGAGGAGATTGTTAGTATGTCTGAACCGCTACTATTGCAGCACAACAAGAGGGAAGACAATCCATTACACTTTGCGGCGAGACATGGGTGTGCTGACATAGTGAAAGCTCTTATTCAGGCTTCAAAAGCTCGTGATTCCAGTGACCTCGAGAAAGGTGTCTCCACAGAAGGAAAATGCTGGCAGACGCTCATAAGAACAACCAACAAGGAGGAAAACACTCCATTGCACGAGGCTGTGCGGTTTAACCACCATAGTGTTGTGAAGGTACTGATCACAGAAGACCCTGAGTTCTTGTATAGTGCTAATGTTGATGGCGAGACTCCTGTTTACATGGCTGCCGAGAGGGGATATATTGAGTTGGTCAATGAAATGCTCGATAATTGCACGAATCCAGCTTACCAAGGCCCGAAGGGCTTCACGGCTTTGCACGCTGCAGTTATCTCCAATGATGAAGAAATGACGAGAAAATTTCTAAAGACGGAAAGGGCTTTAGCACAAGCAGCAGACGAACTGGGAGACACTCCGCTTCACTGGGCTGCATCACGGGGTCACACTGAAATTGTGAAACAAATACTAGAATGTGATAAATCCATTGCCTACGTTTGTGACAAGAAGAAGAGAACAGCTTTTCATTTGGCGGCCGGTAGAGGTTATGTAGAAGTTATAAAAGAGCTTATTTATCGTTGCCCTGATTGTTGCGAATTGGTTGATGAGAAAGGTAGGAATGGTCTTCACTATGCCAATATGCCATTCATGGTAAACATCATCACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

370

Amino Acids

41.13

Weight (kDa)

5.28

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 111 - 205 1.8e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 135 - 204 6.6e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 178 - 240 3.3e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 224 - 308 1.2e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 255 - 302 1.1e-07 Ankyrin repeats (many copies)
Ank PF00023 285 - 307 2.3e-06 Ankyrin repeat
Ank_4 PF13637 289 - 336 3.6e-07 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
AasI GACNNNNNNGTC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 326
AciI CCGC 6 cut(s) 174, 365, 413, 577, 863, 977
AcoI YGGCCR 1 cut(s) 978
AcsI RAATTY 1 cut(s) 806
AfaI GTAC 2 cut(s) 37, 606
AgsI TTSAA 3 cut(s) 102, 322, 462
AhlI ACTAGT 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 1073, 1105
AleI CACNNNNGTG 1 cut(s) 591
AluBI AGCT 5 cut(s) 446, 467, 734, 965, 1012
AluI AGCT 5 cut(s) 446, 467, 734, 965, 1012
Alw26I GTCTC 6 cut(s) 17, 23, 412, 502, 650, 849
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 2 cut(s) 742, 978
ApeKI GCWGC 5 cut(s) 376, 674, 770, 839, 875
ApoI RAATTY 1 cut(s) 806
Asp700I GAANNNNTTC 1 cut(s) 752
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 485
BauI CACGAG 3 cut(s) 177, 468, 566
BbsI GAAGAC 3 cut(s) 399, 624, 1061
BbvI GCAGC 5 cut(s) 388, 661, 757, 851, 862
BccI CCATC 1 cut(s) 644
BceAI ACGGC 1 cut(s) 774
BclI TGATCA 2 cut(s) 55, 609
BcoDI GTCTC 6 cut(s) 17, 23, 412, 502, 650, 849
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 914
BfmI CTRYAG 2 cut(s) 110, 771
BglI GCCNNNNNGGC 1 cut(s) 750
BisI GCNGC 8 cut(s) 174, 377, 414, 675, 771, 840, 876, 978
BlsI GCNGC 8 cut(s) 175, 378, 415, 676, 772, 841, 877, 979
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 743
BmrI ACTGGG 2 cut(s) 860, 880
BmsI GCATC 3 cut(s) 184, 226, 887
BmuI ACTGGG 2 cut(s) 860, 880
BpiI GAAGAC 3 cut(s) 399, 624, 1061
BpuEI CTTGAG 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 1110
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 81, 739
Bse118I RCCGGY 1 cut(s) 980
Bse1I ACTGG 4 cut(s) 37, 477, 855, 875
Bse3DI GCAATG 2 cut(s) 560, 930
BseDI CCNNGG 2 cut(s) 81, 739
BseMI GCAATG 2 cut(s) 560, 930
BseMII CTCAG 2 cut(s) 12, 615
BseNI ACTGG 4 cut(s) 37, 477, 855, 875
BseRI GAGGAG 1 cut(s) 356
BseX3I CGGCCG 1 cut(s) 978
BseXI GCAGC 5 cut(s) 388, 661, 757, 851, 862
Bsh1285I CGRYCG 1 cut(s) 981
BshFI GGCC 2 cut(s) 744, 980
BsiEI CGRYCG 1 cut(s) 981
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 1 cut(s) 981
BsmAI GTCTC 6 cut(s) 17, 23, 412, 502, 650, 849
BsnI GGCC 2 cut(s) 744, 980
Bso31I GGTCTC 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 485
Bsp143I GATC 3 cut(s) 55, 60, 609
BspACI CCGC 6 cut(s) 174, 365, 413, 577, 863, 977
BspANI GGCC 2 cut(s) 744, 980
BspCNI CTCAG 2 cut(s) 13, 616
BspMAI CTGCAG 2 cut(s) 114, 775
BspTNI GGTCTC 1 cut(s) 17
BsrDI GCAATG 2 cut(s) 560, 930
BsrFI RCCGGY 1 cut(s) 980
BsrI ACTGG 4 cut(s) 37, 477, 855, 875
BssAI RCCGGY 1 cut(s) 980
BssECI CCNNGG 2 cut(s) 81, 739
BssMI GATC 3 cut(s) 55, 60, 609
BssSI CACGAG 3 cut(s) 177, 468, 566
BssT1I CCWWGG 1 cut(s) 739
Bst2BI CACGAG 3 cut(s) 177, 468, 566
Bst4CI ACNGT 2 cut(s) 82, 253
Bst6I CTCTTC 1 cut(s) 950
BstAPI GCANNNNNTGC 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 1110
BstC8I GCNNGC 3 cut(s) 110, 518, 768
BstDEI CTNAG 3 cut(s) 21, 200, 624
BstDSI CCRYGG 1 cut(s) 81
BstKTI GATC 3 cut(s) 58, 63, 612
BstMAI GTCTC 6 cut(s) 17, 23, 412, 502, 650, 849
BstMBI GATC 3 cut(s) 55, 60, 609
BstMCI CGRYCG 1 cut(s) 981
BstMWI GCNNNNNNNGC 6 cut(s) 214, 373, 464, 750, 767, 839
BstNSI RCATGY 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 110, 771
BstV1I GCAGC 5 cut(s) 388, 661, 757, 851, 862
BstV2I GAAGAC 3 cut(s) 399, 624, 1061
BstZI CGGCCG 1 cut(s) 978
BsuRI GGCC 2 cut(s) 744, 980
BtgI CCRYGG 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 4 cut(s) 289, 484, 868, 891
Cac8I GCNNGC 3 cut(s) 110, 518, 768
Cfr10I RCCGGY 1 cut(s) 980
Cfr13I GGNCC 1 cut(s) 743
CseI GACGC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 36, 605
CviAII CATG 5 cut(s) 151, 273, 422, 670, 1093
CviQI GTAC 2 cut(s) 36, 605
DdeI CTNAG 3 cut(s) 21, 200, 624
DpnI GATC 3 cut(s) 57, 62, 611
DpnII GATC 3 cut(s) 55, 60, 609
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 978
EagI CGGCCG 1 cut(s) 978
Eam1104I CTCTTC 1 cut(s) 950
EarI CTCTTC 1 cut(s) 950
EclXI CGGCCG 1 cut(s) 978
Eco130I CCWWGG 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 17
Eco52I CGGCCG 1 cut(s) 978
Eco88I CYCGRG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 5 cut(s) 154, 276, 425, 673, 1096
FatI CATG 5 cut(s) 150, 272, 421, 669, 1092
FbaI TGATCA 2 cut(s) 55, 609
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 8 cut(s) 174, 377, 414, 675, 771, 840, 876, 978
Fsp4HI GCNGC 8 cut(s) 174, 377, 414, 675, 771, 840, 876, 978
FspBI CTAG 2 cut(s) 50, 914
GluI GCNGC 8 cut(s) 174, 377, 414, 675, 771, 840, 876, 978
HaeIII GGCC 2 cut(s) 744, 980
HapII CCGG 1 cut(s) 981
HgaI GACGC 1 cut(s) 532
Hin1II CATG 5 cut(s) 154, 276, 425, 673, 1096
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 6 cut(s) 4, 116, 235, 473, 658, 727
HpaII CCGG 1 cut(s) 981
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 4 cut(s) 234, 327, 667, 1099
Hpy188I TCNGA 4 cut(s) 22, 60, 307, 361
Hpy188III TCNNGA 2 cut(s) 470, 487
Hpy8I GTNNAC 4 cut(s) 234, 327, 667, 1099
HpyAV CCTTC 4 cut(s) 176, 500, 595, 742
HpyCH4III ACNGT 2 cut(s) 82, 253
HpyCH4IV ACGT 2 cut(s) 939, 1109
HpyCH4V TGCA 9 cut(s) 112, 217, 287, 376, 565, 723, 766, 773, 878
HpyF10VI GCNNNNNNNGC 6 cut(s) 214, 373, 464, 750, 767, 839
HpyF3I CTNAG 3 cut(s) 21, 200, 624
HpySE526I ACGT 2 cut(s) 939, 1109
Hsp92II CATG 5 cut(s) 154, 276, 425, 673, 1096
Ksp22I TGATCA 2 cut(s) 55, 609
Kzo9I GATC 3 cut(s) 55, 60, 609
Lsp1109I GCAGC 5 cut(s) 388, 661, 757, 851, 862
LweI GCATC 3 cut(s) 184, 226, 887
MaeI CTAG 2 cut(s) 50, 914
MaeII ACGT 2 cut(s) 939, 1109
MaeIII GTNAC 3 cut(s) 479, 887, 944
MalI GATC 3 cut(s) 57, 62, 611
MboI GATC 3 cut(s) 55, 60, 609
MboII GAAGA 8 cut(s) 212, 323, 404, 629, 803, 964, 967, 1061
MluCI AATT 7 cut(s) 13, 91, 97, 718, 806, 897, 1040
MlyI GAGTC 2 cut(s) 229, 652
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 9 cut(s) 19, 266, 334, 381, 494, 541, 562, 675, 980
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 2 cut(s) 134, 582
MslI CAYNNNNRTG 2 cut(s) 426, 591
MspI CCGG 1 cut(s) 981
MwoI GCNNNNNNNGC 6 cut(s) 214, 373, 464, 750, 767, 839
NdeII GATC 3 cut(s) 55, 60, 609
NlaIII CATG 5 cut(s) 154, 276, 425, 673, 1096
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 3 cut(s) 479, 887, 944
NspI RCATGY 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 591
PaeR7I CTCGAG 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 4 cut(s) 4, 116, 473, 727
PkrI GCNGC 8 cut(s) 175, 378, 415, 676, 772, 841, 877, 979
PleI GAGTC 2 cut(s) 229, 652
PpsI GAGTC 2 cut(s) 229, 652
Ppu21I YACGTR 1 cut(s) 1110
PsiI TTATAA 1 cut(s) 1004
PspPI GGNCC 1 cut(s) 743
PstI CTGCAG 2 cut(s) 114, 775
RsaI GTAC 2 cut(s) 37, 606
RsaNI GTAC 2 cut(s) 36, 605
RseI CAYNNNNRTG 2 cut(s) 426, 591
SaqAI TTAA 2 cut(s) 134, 582
SatI GCNGC 8 cut(s) 174, 377, 414, 675, 771, 840, 876, 978
Sau3AI GATC 3 cut(s) 55, 60, 609
Sau96I GGNCC 1 cut(s) 743
SbfI CCTGCAGG 1 cut(s) 114
SchI GAGTC 2 cut(s) 229, 652
SdaI CCTGCAGG 1 cut(s) 114
SfaNI GCATC 3 cut(s) 184, 226, 887
SfcI CTRYAG 2 cut(s) 110, 771
Sfr274I CTCGAG 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 426, 591
SmlI CTYRAG 2 cut(s) 39, 485
SmoI CTYRAG 2 cut(s) 39, 485
SpeI ACTAGT 1 cut(s) 49
Sse8387I CCTGCAGG 1 cut(s) 114
Sse9I AATT 7 cut(s) 13, 91, 97, 718, 806, 897, 1040
SsiI CCGC 6 cut(s) 174, 365, 413, 577, 863, 977
SspI AATATT 2 cut(s) 190, 294
SspMI CTAG 2 cut(s) 50, 914
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 2 cut(s) 82, 253
TaiI ACGT 2 cut(s) 942, 1112
TaqI TCGA 3 cut(s) 63, 486, 714
TaqII GACCGA 1 cut(s) 41
TasI AATT 7 cut(s) 13, 91, 97, 718, 806, 897, 1040
TauI GCSGC 3 cut(s) 176, 416, 980
TfiI GAWTC 4 cut(s) 4, 116, 473, 727
Tru1I TTAA 2 cut(s) 134, 582
Tru9I TTAA 2 cut(s) 134, 582
TscAI CASTG 4 cut(s) 289, 484, 875, 898
TseFI GTSAC 3 cut(s) 479, 887, 944
TseI GCWGC 5 cut(s) 376, 674, 770, 839, 875
Tsp45I GTSAC 3 cut(s) 479, 887, 944
TspDTI ATGAA 7 cut(s) 17, 157, 324, 720, 804, 959, 1081
TspGWI ACGGA 1 cut(s) 833
TspRI CASTG 4 cut(s) 289, 484, 875, 898
XapI RAATTY 1 cut(s) 806
XceI RCATGY 1 cut(s) 276
XhoI CTCGAG 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 2 cut(s) 50, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.