FvH4_1g10402

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000489
Physical Location & Seq
Reverse (-)
5687334 .. 5688217
884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10402.t1

Sequence Viewer

Length: 801 bp
ATGTTGACGGATTCTGAGGAATTGCTGAAATCAGCCGGGGTTGTAAGGGAGATGCTTAAAATTTGCCAGAGGCTACTGTTGCAGCCAAACCAGAGTGGTGATACTGCCTTACACTTGGCGGCAAGACACGGACGTGCTGAGATAGTTGAAGTTCTTATTCAGGCTGCGAAAGACTGGCACGGCGACCTCGAAGAAGGTACCTCATCAACAGAAGGATGCCACCGGTTTCTCATAAGAAGAACTAACAAGGAGAAAAACACAGCCTTGCATGAGGCAGTGCGGTTCAATCACTTTGATGTGGTTAAGAAATTGACTGAGGAAGACCCTGAGTTTTTGTACTCTGCTAATGATGCTGGCGAAACTCCACTCTACATTGCTGCCGAAAATCGATACCGCAAATCGGTTTTTGAAATCCTCGACACTTGCACGAATCCATCCTACCAAGGACCCGATGGTTTAACCGCTTTACACATTGCAGCTTCCTACGGTGACGAACCGCCTGTGCGCACTGTCCTTAAAGTGCGCACATCCCTCCGTTCGCCACCGTCCAGTGCCAACAACGGCGCGCCTCCACCCCAGAAGACTCCAGCAGCGTCCCCGATCACTTTCCTTTCCCGGCGAGTCCGTTCTTTTCCAGTTTTCCGACGAGATCACCCAAAACTTCAAATAAATTCGATCTCACCAGAAACTGGAATTCGGCGGACTCGCCGGGGAGGGAAAATGATCAGGGACGCTGCTGGAGTCCGCTTGGGTGGAGGCGTGCCGTCGTCTGTGCCTAACGGAGGAACGTGCGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

267

Amino Acids

29.23

Weight (kDa)

9.23

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 18 - 107 2.9e-12 Ankyrin repeats (3 copies)
Ank PF00023 33 - 55 7.2e-06 Ankyrin repeat
Ank_2 PF12796 78 - 139 2.9e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 506, 524, 793
Acc65I GGTACC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 689
AccII CGCG 1 cut(s) 566
AciI CCGC 7 cut(s) 119, 280, 394, 462, 497, 700, 745
AcsI RAATTY 3 cut(s) 60, 670, 693
AfaI GTAC 2 cut(s) 199, 338
AfiI CCNNNNNNNGG 3 cut(s) 400, 689, 782
AgeI ACCGGT 1 cut(s) 222
AgsI TTSAA 4 cut(s) 149, 286, 410, 665
AjiI CACGTC 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 1 cut(s) 479
AluI AGCT 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 689
ApeKI GCWGC 6 cut(s) 82, 164, 377, 476, 590, 734
ApoI RAATTY 3 cut(s) 60, 670, 693
AscI GGCGCGCC 1 cut(s) 564
AsiGI ACCGGT 1 cut(s) 222
Asp718I GGTACC 1 cut(s) 197
AspLEI GCGC 5 cut(s) 507, 525, 566, 568, 794
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 3 cut(s) 37, 616, 710
AsuHPI GGTGA 4 cut(s) 110, 500, 644, 672
AvaII GGWCC 1 cut(s) 446
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 327, 587
BbvI GCAGC 6 cut(s) 94, 151, 364, 488, 602, 721
BccI CCATC 2 cut(s) 442, 446
BceAI ACGGC 3 cut(s) 196, 577, 748
BclI TGATCA 1 cut(s) 723
BcnI CCSGG 3 cut(s) 37, 616, 710
BisI GCNGC 7 cut(s) 83, 120, 165, 378, 477, 591, 735
BlsI GCNGC 7 cut(s) 84, 121, 166, 379, 478, 592, 736
Bme1390I CCNGG 3 cut(s) 37, 616, 710
Bme18I GGWCC 1 cut(s) 446
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 199, 448
BmrFI CCNGG 3 cut(s) 37, 616, 710
BmsI GCATC 3 cut(s) 42, 206, 340
BpiI GAAGAC 2 cut(s) 327, 587
BpmI CTGGAG 2 cut(s) 570, 759
BpuMI CCSGG 3 cut(s) 37, 616, 710
Bsa29I ATCGAT 1 cut(s) 388
BsaJI CCNNGG 3 cut(s) 36, 442, 709
BsaWI WCCGGW 1 cut(s) 222
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 689, 782
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 4 cut(s) 179, 549, 635, 694
Bse3DI GCAATG 2 cut(s) 372, 471
BseCI ATCGAT 1 cut(s) 388
BseDI CCNNGG 3 cut(s) 36, 442, 709
BseGI GGATG 3 cut(s) 221, 434, 527
BseLI CCNNNNNNNGG 3 cut(s) 400, 689, 782
BseMI GCAATG 2 cut(s) 372, 471
BseMII CTCAG 4 cut(s) 6, 129, 306, 318
BseNI ACTGG 4 cut(s) 179, 549, 635, 694
BsePI GCGCGC 1 cut(s) 564
BseXI GCAGC 6 cut(s) 94, 151, 364, 488, 602, 721
Bsh1236I CGCG 1 cut(s) 566
BshNI GGYRCC 1 cut(s) 197
BshTI ACCGGT 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 388
BsiSI CCGG 4 cut(s) 36, 223, 616, 709
BslFI GGGAC 2 cut(s) 580, 743
BslI CCNNNNNNNGG 3 cut(s) 400, 689, 782
BsmFI GGGAC 2 cut(s) 580, 743
Bsp143I GATC 4 cut(s) 600, 649, 675, 723
BspACI CCGC 7 cut(s) 119, 280, 394, 462, 497, 700, 745
BspCNI CTCAG 4 cut(s) 7, 130, 307, 319
BspDI ATCGAT 1 cut(s) 388
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 2 cut(s) 199, 448
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 372, 471
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 4 cut(s) 179, 549, 635, 694
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 3 cut(s) 36, 442, 709
BssHII GCGCGC 1 cut(s) 564
BssMI GATC 4 cut(s) 600, 649, 675, 723
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 4 cut(s) 78, 488, 511, 546
BstC8I GCNNGC 3 cut(s) 355, 566, 761
BstDEI CTNAG 4 cut(s) 15, 138, 315, 327
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 3 cut(s) 221, 434, 527
BstFNI CGCG 1 cut(s) 566
BstHHI GCGC 5 cut(s) 507, 525, 566, 568, 794
BstKTI GATC 4 cut(s) 603, 652, 678, 726
BstMBI GATC 4 cut(s) 600, 649, 675, 723
BstMWI GCNNNNNNNGC 2 cut(s) 79, 350
BstSCI CCNGG 3 cut(s) 35, 614, 708
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 6 cut(s) 94, 151, 364, 488, 602, 721
BstV2I GAAGAC 2 cut(s) 327, 587
Bsu15I ATCGAT 1 cut(s) 388
BsuTUI ATCGAT 1 cut(s) 388
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 3 cut(s) 221, 434, 527
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 282, 507, 556
Cac8I GCNNGC 3 cut(s) 355, 566, 761
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 5 cut(s) 507, 525, 566, 568, 794
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 446
ClaI ATCGAT 1 cut(s) 388
CseI GACGC 2 cut(s) 582, 740
Csp6I GTAC 2 cut(s) 198, 337
CspAI ACCGGT 1 cut(s) 222
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 35, 73, 85, 164, 263, 479
CviKI_1 RGCY 6 cut(s) 35, 73, 85, 164, 263, 479
CviQI GTAC 2 cut(s) 198, 337
DdeI CTNAG 4 cut(s) 15, 138, 315, 327
DpnI GATC 4 cut(s) 602, 651, 677, 725
DpnII GATC 4 cut(s) 600, 649, 675, 723
EciI GGCGGA 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoO109I RGGNCCY 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 1 cut(s) 272
FaiI YATR 2 cut(s) 233, 270
FaqI GGGAC 2 cut(s) 580, 743
FatI CATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 723
Fnu4HI GCNGC 7 cut(s) 83, 120, 165, 378, 477, 591, 735
FokI GGATG 3 cut(s) 228, 421, 514
Fsp4HI GCNGC 7 cut(s) 83, 120, 165, 378, 477, 591, 735
FspAI RTGCGCAY 3 cut(s) 506, 524, 793
FspI TGCGCA 3 cut(s) 506, 524, 793
GlaI GCGC 5 cut(s) 506, 524, 565, 567, 793
GluI GCNGC 7 cut(s) 83, 120, 165, 378, 477, 591, 735
GsuI CTGGAG 2 cut(s) 570, 759
HapII CCGG 4 cut(s) 36, 223, 616, 709
HgaI GACGC 2 cut(s) 582, 740
HhaI GCGC 5 cut(s) 507, 525, 566, 568, 794
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 5 cut(s) 505, 523, 564, 566, 792
HinP1I GCGC 5 cut(s) 505, 523, 564, 566, 792
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 6 cut(s) 11, 430, 583, 621, 703, 741
HpaII CCGG 4 cut(s) 36, 223, 616, 709
HphI GGTGA 4 cut(s) 110, 500, 644, 672
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 16, 644
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 648, 769
HpyAV CCTTC 2 cut(s) 188, 206
HpyCH4III ACNGT 4 cut(s) 78, 488, 511, 546
HpyCH4IV ACGT 2 cut(s) 133, 788
HpyCH4V TGCA 4 cut(s) 82, 268, 426, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 350
HpyF3I CTNAG 4 cut(s) 15, 138, 315, 327
HpySE526I ACGT 2 cut(s) 133, 788
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 5 cut(s) 505, 523, 564, 566, 792
KpnI GGTACC 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 723
Kzo9I GATC 4 cut(s) 600, 649, 675, 723
Lsp1109I GCAGC 6 cut(s) 94, 151, 364, 488, 602, 721
LweI GCATC 3 cut(s) 42, 206, 340
MaeII ACGT 2 cut(s) 133, 788
MaeIII GTNAC 1 cut(s) 488
MalI GATC 4 cut(s) 602, 651, 677, 725
MboI GATC 4 cut(s) 600, 649, 675, 723
MboII GAAGA 4 cut(s) 203, 249, 332, 592
MluCI AATT 5 cut(s) 20, 60, 308, 670, 693
MlyI GAGTC 4 cut(s) 577, 630, 697, 750
MmeI TCCRAC 1 cut(s) 667
MseI TTAA 5 cut(s) 57, 303, 458, 516, 799
MslI CAYNNNNRTG 2 cut(s) 132, 294
MspI CCGG 4 cut(s) 36, 223, 616, 709
MspR9I CCNGG 3 cut(s) 37, 616, 710
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 79, 350
NciI CCSGG 3 cut(s) 37, 616, 710
NdeII GATC 4 cut(s) 600, 649, 675, 723
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 199, 448
NmuCI GTSAC 1 cut(s) 488
NsbI TGCGCA 3 cut(s) 506, 524, 793
OliI CACNNNNGTG 1 cut(s) 132
PalAI GGCGCGCC 1 cut(s) 564
PauI GCGCGC 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 11, 430
PflMI CCANNNNNTGG 1 cut(s) 689
PinAI ACCGGT 1 cut(s) 222
PkrI GCNGC 7 cut(s) 84, 121, 166, 379, 478, 592, 736
PleI GAGTC 4 cut(s) 577, 629, 697, 749
PpsI GAGTC 4 cut(s) 577, 629, 697, 749
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 199, 448
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
PstNI CAGNNNCTG 1 cut(s) 689
PteI GCGCGC 1 cut(s) 564
RsaI GTAC 2 cut(s) 199, 338
RsaNI GTAC 2 cut(s) 198, 337
RseI CAYNNNNRTG 2 cut(s) 132, 294
SaqAI TTAA 5 cut(s) 57, 303, 458, 516, 799
SatI GCNGC 7 cut(s) 83, 120, 165, 378, 477, 591, 735
Sau3AI GATC 4 cut(s) 600, 649, 675, 723
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 4 cut(s) 577, 630, 697, 750
ScrFI CCNGG 3 cut(s) 37, 616, 710
SetI ASST 6 cut(s) 136, 189, 199, 203, 481, 791
SfaNI GCATC 3 cut(s) 42, 206, 340
SgsI GGCGCGCC 1 cut(s) 564
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 2 cut(s) 132, 294
Sse9I AATT 5 cut(s) 20, 60, 308, 670, 693
SsiI CCGC 7 cut(s) 119, 280, 394, 462, 497, 700, 745
StyD4I CCNGG 3 cut(s) 35, 614, 708
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 4 cut(s) 78, 488, 511, 546
TaiI ACGT 2 cut(s) 136, 791
TaqI TCGA 4 cut(s) 189, 388, 417, 674
TasI AATT 5 cut(s) 20, 60, 308, 670, 693
TatI WGTACW 1 cut(s) 336
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 11, 430
Tru1I TTAA 5 cut(s) 57, 303, 458, 516, 799
Tru9I TTAA 5 cut(s) 57, 303, 458, 516, 799
TscAI CASTG 3 cut(s) 282, 514, 556
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 6 cut(s) 82, 164, 377, 476, 590, 734
Tsp45I GTSAC 1 cut(s) 488
TspGWI ACGGA 5 cut(s) 23, 144, 524, 614, 795
TspRI CASTG 3 cut(s) 282, 514, 556
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 1 cut(s) 446
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 3 cut(s) 60, 670, 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.