Rroxscaffold_3G00224130

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000489
Physical Location & Seq
Forward (+)
7284496 .. 7284951
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224130.1

Sequence Viewer

Length: 456 bp
ATGGTAGTGTCTACACTCATAGCAAATGTAACCTTCGCAGCAGGTTTCACTGTGCCTGGTGGTTACCAAAGTGAAAAAGGGCCAGATCAAGGTTTGGCAGTTCTATCAAGAAATGCAGCTTTCAAGGCGTTTGTGATAACAAATACATTAGCCATGACTCTGTCCAGTTGTGCTGTCATGCTACGCTTTCTCTCATCACTGAACTGGTCAGATTCATTATTACGTGTGGCACTTATTGAAATGGTGGCTGCATTCCTTACCGGTGTATATGCAGTATTAGGCGGTCATTCTTCATTAGGACTTGCCATTGCGGATTGTGTGCTTGGGGCTGTCTTCTTCTTCGCTATATGTTTTGTCTCTATTTCTCCAGCTTTCAATACTTTTCATAATCGTGTCTCCCTTCTCCATCACCGCATAATTACCCTGCTTGGATTGGAATCAGTATTTTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

151

Amino Acids

16.13

Weight (kDa)

7.79

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 1 - 92 2.2e-24 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 11
AciI CCGC 3 cut(s) 282, 311, 412
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 223
AgeI ACCGGT 1 cut(s) 260
AgsI TTSAA 3 cut(s) 124, 239, 376
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 119, 371
AluI AGCT 2 cut(s) 119, 371
Alw26I GTCTC 2 cut(s) 361, 400
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 38, 116, 248
AsiGI ACCGGT 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 325
BbvI GCAGC 3 cut(s) 50, 128, 235
BccI CCATC 1 cut(s) 414
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 361, 400
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 3 cut(s) 39, 117, 249
BlsI GCNGC 3 cut(s) 40, 118, 250
Bme1390I CCNGG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 436
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 165, 209
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 436
BseBI CCWGG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 165, 209
BseXI GCAGC 3 cut(s) 50, 128, 235
BshFI GGCC 1 cut(s) 82
BshTI ACCGGT 1 cut(s) 260
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 361, 400
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 3 cut(s) 282, 311, 412
BspANI GGCC 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 165, 209
BssAI RCCGGY 1 cut(s) 260
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 224
BstEII GGTNACC 1 cut(s) 62
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 361, 400
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 3 cut(s) 50, 128, 235
BstV2I GAAGAC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 48, 197
BveI ACCTGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 2 cut(s) 154, 178
CviJI RGCY 6 cut(s) 82, 119, 152, 248, 329, 371
CviKI_1 RGCY 6 cut(s) 82, 119, 152, 248, 329, 371
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 157, 181
FaiI YATR 9 cut(s) 20, 155, 179, 268, 270, 347, 349, 387, 416
FatI CATG 2 cut(s) 153, 177
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 39, 117, 249
Fsp4HI GCNGC 3 cut(s) 39, 117, 249
GluI GCNGC 3 cut(s) 39, 117, 249
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 261
Hin1II CATG 2 cut(s) 157, 181
HinfI GANTC 3 cut(s) 157, 212, 437
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 43, 410
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 116, 251, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 157, 181
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 9 cut(s) 27, 42, 69, 96, 178, 190, 274, 381, 437
Lsp1109I GCAGC 3 cut(s) 50, 128, 235
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 28, 62
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 4 cut(s) 282, 325, 328, 331
MluCI AATT 1 cut(s) 417
MlyI GAGTC 1 cut(s) 151
MslI CAYNNNNRTG 1 cut(s) 390
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 157, 181
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 212, 437
PflFI GACNNNGTC 1 cut(s) 160
PinAI ACCGGT 1 cut(s) 260
PkrI GCNGC 3 cut(s) 40, 118, 250
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 55
PspPI GGNCC 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 390
SatI GCNGC 3 cut(s) 39, 117, 249
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 57
SetI ASST 6 cut(s) 35, 46, 94, 121, 226, 373
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 1 cut(s) 417
SsiI CCGC 3 cut(s) 282, 311, 412
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 226
TasI AATT 1 cut(s) 417
TfiI GAWTC 2 cut(s) 212, 437
TscAI CASTG 2 cut(s) 55, 204
TseI GCWGC 3 cut(s) 38, 116, 248
TspDTI ATGAA 3 cut(s) 204, 282, 374
TspRI CASTG 2 cut(s) 55, 204
Tth111I GACNNNGTC 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.