pycom08g18250

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000489
Physical Location & Seq
Reverse (-)
18526728 .. 18527355
628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18250.2

Sequence Viewer

Length: 555 bp
ATGGGTAGCAGATATCTCGAAGAAAAGGAGAGCAAAGAAGAGGAAGCCAGAAACATGAGCAAAGAAGCCAAAAACAAGAGGACAGAAGTAAAAGGAATGAGGATTGCAGATATCTCGAAGAAAATGAGGGATACCAATTTGATAGCAGCCACACTCATAGCAACTGTAACATTCACAGCGGGTTTCACCATGCCAGGTGGTTTCAACACTCTGGGTGCTCCAATTCTGATTAGAACCAAAGCCTTTCAAGCATTCATTATAACAAATACCTTAGCCATGGTTTTCTCCAGTTCATCTGTTGCGTTCCACCTCTTCATGGGGCGCCGACGGAAAGACAATTTGATCGACTATCAAACGGTCGACCTTATGTTGGGTTACACCTCGATTAGCATGATGTGCATGGCAATTGCATTCGTCACTGGCACATATGCAGTTTTACAACGTTCCTTTGCCTTTGCCAATGCCATTTGTGTCACTGGCTGCCTTTTGTTATGTATATTTTATTTCGTGGCAACGGCAGCTAGTGACCAGGCCGCTGCCTCTATTGCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

185

Amino Acids

20.2

Weight (kDa)

9.27

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 360
AciI CCGC 2 cut(s) 179, 534
AclI AACGTT 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 316, 370
AgsI TTSAA 2 cut(s) 205, 248
AjnI CCWGG 2 cut(s) 193, 528
AluBI AGCT 1 cut(s) 521
AluI AGCT 1 cut(s) 521
Alw21I GWGCWC 1 cut(s) 220
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 4 cut(s) 146, 480, 518, 536
AspLEI GCGC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 178
BanI GGYRCC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 4 cut(s) 158, 467, 523, 530
BceAI ACGGC 1 cut(s) 531
BcgI CGANNNNNNTGC 3 cut(s) 32, 96, 130
BciT130I CCWGG 2 cut(s) 195, 530
BciVI GTATCC 1 cut(s) 124
BfaI CTAG 1 cut(s) 522
BfoI RGCGCY 1 cut(s) 325
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 5 cut(s) 147, 481, 519, 534, 537
BlsI GCNGC 5 cut(s) 148, 482, 520, 535, 538
Bme1390I CCNGG 2 cut(s) 195, 530
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 2 cut(s) 195, 530
BpmI CTGGAG 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 271
BsaHI GRCGYC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 370
Bse1I ACTGG 3 cut(s) 288, 424, 481
BseBI CCWGG 2 cut(s) 195, 530
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 316, 370
BseNI ACTGG 3 cut(s) 288, 424, 481
BseXI GCAGC 4 cut(s) 158, 467, 523, 530
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 316, 370
BsmI GAATGC 2 cut(s) 251, 410
BsnI GGCC 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 342
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 179, 534
BspANI GGCC 1 cut(s) 533
BspLI GGNNCC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 321
BsrI ACTGG 3 cut(s) 288, 424, 481
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 195, 530
Bst4CI ACNGT 2 cut(s) 166, 358
Bst6I CTCTTC 2 cut(s) 33, 317
BstACI GRCGYC 1 cut(s) 322
BstAPI GCANNNNNTGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 276
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 1 cut(s) 345
BstMBI GATC 1 cut(s) 342
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 4 cut(s) 248, 396, 518, 545
BstNI CCWGG 2 cut(s) 195, 530
BstSCI CCNGG 2 cut(s) 193, 528
BstV1I GCAGC 4 cut(s) 158, 467, 523, 530
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 533
BtgI CCRYGG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 417, 474
CfoI GCGC 1 cut(s) 324
CviAII CATG 6 cut(s) 55, 190, 277, 316, 391, 400
CviJI RGCY 8 cut(s) 47, 68, 149, 242, 275, 480, 521, 533
CviKI_1 RGCY 8 cut(s) 47, 68, 149, 242, 275, 480, 521, 533
DdeI CTNAG 1 cut(s) 271
DinI GGCGCC 1 cut(s) 323
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 33, 317
EarI CTCTTC 2 cut(s) 33, 317
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 2 cut(s) 14, 112
EcoRII CCWGG 2 cut(s) 193, 528
EcoRV GATATC 2 cut(s) 14, 112
EcoT14I CCWWGG 1 cut(s) 276
EgeI GGCGCC 1 cut(s) 323
EheI GGCGCC 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 6 cut(s) 58, 193, 280, 319, 394, 403
FatI CATG 6 cut(s) 54, 189, 276, 315, 390, 399
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 427
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 147, 481, 519, 534, 537
Fsp4HI GCNGC 5 cut(s) 147, 481, 519, 534, 537
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 323
GluI GCNGC 5 cut(s) 147, 481, 519, 534, 537
GsuI CTGGAG 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 1 cut(s) 533
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 322
Hin1II CATG 6 cut(s) 58, 193, 280, 319, 394, 403
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 17, 115
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 1 cut(s) 330
HpyCH4III ACNGT 2 cut(s) 166, 358
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 4 cut(s) 107, 399, 410, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 396, 518, 545
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 442
Hsp92I GRCGYC 1 cut(s) 322
Hsp92II CATG 6 cut(s) 58, 193, 280, 319, 394, 403
HspAI GCGC 1 cut(s) 322
KasI GGCGCC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 9 cut(s) 61, 180, 197, 207, 301, 405, 462, 515, 542
Lsp1109I GCAGC 4 cut(s) 158, 467, 523, 530
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 5 cut(s) 166, 374, 415, 472, 524
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 4 cut(s) 32, 50, 130, 304
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 4 cut(s) 136, 222, 337, 405
Mly113I GGCGCC 1 cut(s) 322
MnlI CCTC 7 cut(s) 34, 72, 93, 120, 320, 391, 550
MspA1I CMGCKG 2 cut(s) 179, 536
MspR9I CCNGG 2 cut(s) 195, 530
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 2 cut(s) 251, 410
MvaI CCWGG 2 cut(s) 195, 530
MwoI GCNNNNNNNGC 4 cut(s) 248, 396, 518, 545
NarI GGCGCC 1 cut(s) 322
NcoI CCATGG 1 cut(s) 276
NdeI CATATG 1 cut(s) 427
NdeII GATC 1 cut(s) 342
NlaIII CATG 6 cut(s) 58, 193, 280, 319, 394, 403
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 3 cut(s) 415, 472, 524
PctI GAATGC 2 cut(s) 251, 410
PkrI GCNGC 5 cut(s) 148, 482, 520, 535, 538
PluTI GGCGCC 1 cut(s) 325
PsiI TTATAA 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 442
Psp6I CCWGG 2 cut(s) 193, 528
PspGI CCWGG 2 cut(s) 193, 528
PspN4I GGNNCC 1 cut(s) 323
SalI GTCGAC 1 cut(s) 359
SatI GCNGC 5 cut(s) 147, 481, 519, 534, 537
Sau3AI GATC 1 cut(s) 342
ScrFI CCNGG 2 cut(s) 195, 530
SduI GDGCHC 1 cut(s) 220
SetI ASST 7 cut(s) 199, 272, 312, 366, 383, 445, 523
SfoI GGCGCC 1 cut(s) 323
Sse9I AATT 4 cut(s) 136, 222, 337, 405
SsiI CCGC 2 cut(s) 179, 534
SspDI GGCGCC 1 cut(s) 321
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 2 cut(s) 193, 528
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 166, 358
TaiI ACGT 1 cut(s) 445
TaqI TCGA 5 cut(s) 18, 116, 345, 360, 383
TasI AATT 4 cut(s) 136, 222, 337, 405
TauI GCSGC 1 cut(s) 536
TscAI CASTG 2 cut(s) 424, 481
TseFI GTSAC 3 cut(s) 415, 472, 524
TseI GCWGC 4 cut(s) 146, 480, 518, 536
Tsp45I GTSAC 3 cut(s) 415, 472, 524
TspDTI ATGAA 3 cut(s) 244, 282, 304
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 2 cut(s) 424, 481
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.