Rh6AG214000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000489
Physical Location & Seq
Forward (+)
38292672 .. 38298113
5442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG214000.1

Sequence Viewer

Length: 1947 bp
ATGGATCCATCTCCGTCCAATTCGTCTGGGATTGAGAGAGCTAAAGCCTCGCCGAGTTTTGCTGCCGGTTCTAGTCAAGAAGTTACCACAGACGAGCAATATTTAAGAGGCATGGATGTTGCAGTATACAAGGCAGCAAAAGAAGGCGAAACCGATGCCCTTTATGCACAAAGGGAACGTCTTCCCGAAATATTAACTCCAACCAAAAACACAGTCCTCCATATCTACATTGCATGTGCAAGTAGAACCAAAAAGTTATCATCCGGTAACTCAGCCAACGTCACTACCGTGGAATCGATTCTTGAAATGTGTCCAGCACTACTGTCTCAGCCGAACGACGCAGGAGAAACGGCGTTACATGTCGCAGCAAGACACGGGCACAGTGACATAGTTGAACATCTTATTTCCGCTGCTAAGGCTGGTGATCCAGAAAAAGCTTGTTGGTCAGTCCTTATGAGGACACCCAACAGCCACAAAGACACAGCCTTCCACGAGGCAGTGCGCTTTAATCACTTCGACGTGGTCCATACATTGACCAGAGAAGACCGTGACTTTCCCTACTCTGCTAATGCTGCCGGTGAGACTCCACTATATATGGCTGTCGAAAGGGGCTATCATAACTTGGTTTCGAAAATATTGGAGACTTGTTCACATCCAAGTTGTGGAGGTCCTGATGGTAGAACTGCACTGCACGCTGCAGTGATCCACAACGATGAAGAAATGACGAGTAAATTACTATGCCACTTCCCTAAGGAGAGAGCTTTGACGAAAGAAGTAGACGAACAAGGATGGACTCCACTTCACTATGCTGCATTCTTTGGCCACTCTACACTTGTTATTAAGCTACTCGACTCTGATAGATCTGCTGCATACATTCGTGACAAAAATGATAAGATGACAGCCTTGCACATTGCAGCCTCTAGAGGTCATCTAGATGTAATGAAAAAGCTCATTTCTAATTGTCCTGATTGTTGCGAACTGGTTGACAAGAGGCTTCGAAATGTTCTTCACTATGCGATTGAGAAGCATAATTTTCAAATACAAGATTTTATTCGAAAAGATCCATGGTTGAGCAGCATCCTTTTGAACGGCAAAGATGAAGACCAAAACACACCACTCCATCAATTTGTTTCTTCTGCTCACGAGATCCGTGCTTTGTGGTTTACTAGTCGGCTAATTGTAAATTCATGCAGTGATTTTATATGGGATGCTAGAGTTGATAAGATGACTTTCAACAAGGAAAACTTGAACGCTTTTGATATCATTCAAGCTAGCCGCACTTCCTTAACAATAGTCGAGAAAGATATCAAAATGCAATTCGAAAAGAATCGTGCCAGATCAGGACATCGACTTATAAGCAGCTTCGAAGACACTGAATTCAAAGAAGACAAGGATGCCGGATGTGCCAAAGGCAAGGATGTGGGAGGTGCCAAAGGCAAGGATGCCAGAGGTGCCAAAGGCAGTGCTGATGTGATGAAGGAATTAAAACAAGCCCATCTGGTTGTCGCTACACTCATAGCAACAGTAACCTTCACAGCCGGCATGGCCATGCCTGGTGGATATCAAAGTCAAAAAGGACACGACCAGGGTTTGGCAGTTCTAATCAGATTTGCGGGTTTCCTAGTATTTGTTTTGGCCAATACAGCAGCCATGACCTTGTCCTGCTTAGCAGTCTTGTTACACCTATATGTGATTTTGACAGCAGGGCCCGAAGCAATATCCCATCAGTTTGCCTGGGTGTTAAAACTGACTATGTGTGCGCTGCTTGCAATGTTGGCTGCCTTCATTAGTGGCACATATGCTGTGTTAGATCACTCATCATTTTCAGCCTTGAATTGTGCCATTAGCTTGATTTTATTCATCACCATAACTAATGCATTCTTCTTTCGGCGTTCCCTCTCCAGACCTGGGTATGAACTTCGCGTGCACGAATGGTTTGCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

648

Amino Acids

71.57

Weight (kDa)

6.75

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 102 - 179 6.6e-10 Ankyrin repeats (3 copies)
Ank_2 PF12796 134 - 214 2.5e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 197 - 285 4.2e-13 Ankyrin repeats (3 copies)
Ank_2 PF12796 294 - 347 1.3e-07 Ankyrin repeats (3 copies)
PGG PF13962 492 - 602 3.2e-26 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1355
AccB1I GGYRCC 2 cut(s) 1427, 1451
AccB7I CCANNNNNTGG 2 cut(s) 662, 1591
AccI GTMKAC 2 cut(s) 126, 777
AccII CGCG 1 cut(s) 1923
AciI CCGC 3 cut(s) 408, 1276, 1613
AclWI GGATC 5 cut(s) 12, 419, 697, 1055, 1141
AcoI YGGCCR 3 cut(s) 820, 1545, 1635
AcsI RAATTY 2 cut(s) 1183, 1376
AfiI CCNNNNNNNGG 3 cut(s) 662, 1591, 1908
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 9 cut(s) 305, 395, 1037, 1087, 1234, 1249, 1268, 1381, 1834
AhlI ACTAGT 1 cut(s) 1166
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 4 cut(s) 1552, 1584, 1733, 1906
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 9 cut(s) 41, 437, 761, 844, 949, 1271, 1362, 1848, 1944
AluI AGCT 9 cut(s) 41, 437, 761, 844, 949, 1271, 1362, 1848, 1944
Alw21I GWGCWC 1 cut(s) 1929
Alw26I GTCTC 3 cut(s) 330, 575, 635
Alw44I GTGCAC 1 cut(s) 1925
AlwI GGATC 5 cut(s) 12, 419, 697, 1055, 1141
AoxI GGCC 4 cut(s) 820, 1545, 1635, 1706
ApaI GGGCCC 1 cut(s) 1710
ApaLI GTGCAC 1 cut(s) 1925
ApoI RAATTY 2 cut(s) 1183, 1376
ArsI GACNNNNNNTTYG 4 cut(s) 163, 195, 198, 230
Asp700I GAANNNNTTC 2 cut(s) 180, 297
AspLEI GCGC 2 cut(s) 504, 1762
AspS9I GGNCC 4 cut(s) 523, 668, 1706, 1707
AsuHPI GGTGA 3 cut(s) 434, 590, 1855
AsuII TTCGAA 5 cut(s) 629, 997, 1054, 1320, 1365
AsuNHI GCTAGC 2 cut(s) 1271, 1940
AvaII GGWCC 2 cut(s) 523, 668
AxyI CCTNAGG 1 cut(s) 750
BaeGI GKGCMC 3 cut(s) 381, 1710, 1929
BalI TGGCCA 3 cut(s) 822, 1547, 1637
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 1427, 1451
BanII GRGCYC 1 cut(s) 1710
BauI CACGAG 2 cut(s) 491, 1142
BbsI GAAGAC 5 cut(s) 173, 549, 1107, 1374, 1392
Bbv12I GWGCWC 1 cut(s) 1929
BccI CCATC 6 cut(s) 16, 668, 783, 1128, 1503, 1731
BceAI ACGGC 2 cut(s) 366, 1105
BcgI CGANNNNNNTGC 5 cut(s) 137, 171, 1133, 1167, 1919
BciT130I CCWGG 4 cut(s) 1554, 1586, 1735, 1908
BcoDI GTCTC 3 cut(s) 330, 575, 635
BcuI ACTAGT 1 cut(s) 1166
BfaI CTAG 8 cut(s) 72, 921, 932, 1167, 1212, 1272, 1622, 1941
BfmI CTRYAG 1 cut(s) 696
BglI GCCNNNNNGGC 1 cut(s) 1544
BglII AGATCT 1 cut(s) 860
BlpI GCTNAGC 1 cut(s) 1666
Bme1390I CCNGG 4 cut(s) 1554, 1586, 1735, 1908
Bme18I GGWCC 2 cut(s) 523, 668
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 4 cut(s) 523, 668, 1706, 1707
BmiI GGNNCC 4 cut(s) 6, 1429, 1453, 1708
BmrFI CCNGG 4 cut(s) 1554, 1586, 1735, 1908
BmsI GCATC 5 cut(s) 145, 1086, 1198, 1384, 1432
BmtI GCTAGC 2 cut(s) 1275, 1944
BpiI GAAGAC 5 cut(s) 173, 549, 1107, 1374, 1392
BpmI CTGGAG 1 cut(s) 1885
Bpu10I CCTNAGC 1 cut(s) 414
Bpu1102I GCTNAGC 1 cut(s) 1666
Bpu14I TTCGAA 5 cut(s) 629, 997, 1054, 1320, 1365
Bsa29I ATCGAT 1 cut(s) 296
BsaJI CCNNGG 5 cut(s) 288, 1064, 1585, 1734, 1907
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 3 cut(s) 662, 1591, 1908
Bse118I RCCGGY 3 cut(s) 65, 575, 1538
Bse1I ACTGG 1 cut(s) 984
Bse21I CCTNAGG 1 cut(s) 750
Bse3DI GCAATG 3 cut(s) 228, 909, 1776
BseBI CCWGG 4 cut(s) 1554, 1586, 1735, 1908
BseCI ATCGAT 1 cut(s) 296
BseDI CCNNGG 5 cut(s) 288, 1064, 1585, 1734, 1907
BseLI CCNNNNNNNGG 3 cut(s) 662, 1591, 1908
BseMI GCAATG 3 cut(s) 228, 909, 1776
BseMII CTCAG 2 cut(s) 285, 341
BseNI ACTGG 1 cut(s) 984
BseSI GKGCMC 3 cut(s) 381, 1710, 1929
BsgI GTGCAG 2 cut(s) 669, 674
Bsh1236I CGCG 1 cut(s) 1923
BshFI GGCC 4 cut(s) 822, 1547, 1637, 1708
BshNI GGYRCC 2 cut(s) 1427, 1451
BshVI ATCGAT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 1929
BsiSI CCGG 5 cut(s) 66, 264, 576, 1398, 1539
BslI CCNNNNNNNGG 3 cut(s) 662, 1591, 1908
BsmAI GTCTC 3 cut(s) 330, 575, 635
BsmI GAATGC 2 cut(s) 812, 1877
BsnI GGCC 4 cut(s) 822, 1547, 1637, 1708
Bsp119I TTCGAA 5 cut(s) 629, 997, 1054, 1320, 1365
Bsp120I GGGCCC 1 cut(s) 1706
Bsp1286I GDGCHC 3 cut(s) 381, 1710, 1929
Bsp143I GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
Bsp1720I GCTNAGC 1 cut(s) 1666
Bsp19I CCATGG 1 cut(s) 1064
BspACI CCGC 3 cut(s) 408, 1276, 1613
BspANI GGCC 4 cut(s) 822, 1547, 1637, 1708
BspCNI CTCAG 2 cut(s) 284, 340
BspDI ATCGAT 1 cut(s) 296
BspFNI CGCG 1 cut(s) 1923
BspLI GGNNCC 4 cut(s) 6, 1429, 1453, 1708
BspMAI CTGCAG 1 cut(s) 700
BspOI GCTAGC 2 cut(s) 1275, 1944
BspPI GGATC 5 cut(s) 12, 419, 697, 1055, 1141
BspT104I TTCGAA 5 cut(s) 629, 997, 1054, 1320, 1365
BspT107I GGYRCC 2 cut(s) 1427, 1451
BsrDI GCAATG 3 cut(s) 228, 909, 1776
BsrFI RCCGGY 3 cut(s) 65, 575, 1538
BsrI ACTGG 1 cut(s) 984
BssAI RCCGGY 3 cut(s) 65, 575, 1538
BssECI CCNNGG 5 cut(s) 288, 1064, 1585, 1734, 1907
BssMI GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
BssNAI GTATAC 1 cut(s) 127
BssSI CACGAG 2 cut(s) 491, 1142
BssT1I CCWWGG 1 cut(s) 1064
Bst1107I GTATAC 1 cut(s) 127
Bst2BI CACGAG 2 cut(s) 491, 1142
Bst2UI CCWGG 4 cut(s) 1554, 1586, 1735, 1908
Bst4CI ACNGT 6 cut(s) 214, 289, 324, 383, 548, 1525
BstBI TTCGAA 5 cut(s) 629, 997, 1054, 1320, 1365
BstC8I GCNNGC 6 cut(s) 693, 1273, 1540, 1767, 1925, 1942
BstDEI CTNAG 5 cut(s) 271, 327, 414, 750, 1666
BstDSI CCRYGG 2 cut(s) 288, 1064
BstFNI CGCG 1 cut(s) 1923
BstHHI GCGC 2 cut(s) 504, 1762
BstKTI GATC 8 cut(s) 7, 427, 705, 863, 1063, 1149, 1340, 1813
BstMAI GTCTC 3 cut(s) 330, 575, 635
BstMBI GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
BstNI CCWGG 4 cut(s) 1554, 1586, 1735, 1908
BstNSI RCATGY 2 cut(s) 237, 362
BstSCI CCNGG 4 cut(s) 1552, 1584, 1733, 1906
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 3 cut(s) 381, 1710, 1929
BstUI CGCG 1 cut(s) 1923
BstV2I GAAGAC 5 cut(s) 173, 549, 1107, 1374, 1392
BstX2I RGATCY 4 cut(s) 4, 860, 1060, 1146
BstYI RGATCY 4 cut(s) 4, 860, 1060, 1146
BstZ17I GTATAC 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 296
Bsu36I CCTNAGG 1 cut(s) 750
BsuRI GGCC 4 cut(s) 822, 1547, 1637, 1708
BsuTUI ATCGAT 1 cut(s) 296
BtgI CCRYGG 2 cut(s) 288, 1064
BtrI CACGTC 1 cut(s) 520
BtsI GCAGTG 5 cut(s) 504, 686, 705, 1198, 1468
BtsIMutI CAGTG 7 cut(s) 388, 504, 686, 705, 1198, 1371, 1468
Cac8I GCNNGC 6 cut(s) 693, 1273, 1540, 1767, 1925, 1942
CfoI GCGC 2 cut(s) 504, 1762
Cfr10I RCCGGY 3 cut(s) 65, 575, 1538
Cfr13I GGNCC 4 cut(s) 523, 668, 1706, 1707
ClaI ATCGAT 1 cut(s) 296
CseI GACGC 1 cut(s) 347
CviAII CATG 8 cut(s) 112, 234, 359, 1065, 1188, 1543, 1549, 1651
DdeI CTNAG 5 cut(s) 271, 327, 414, 750, 1666
DpnI GATC 8 cut(s) 6, 426, 704, 862, 1062, 1148, 1339, 1812
DpnII GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
EaeI YGGCCR 3 cut(s) 820, 1545, 1635
Eco130I CCWWGG 1 cut(s) 1064
Eco24I GRGCYC 1 cut(s) 1710
Eco32I GATATC 3 cut(s) 1261, 1306, 1562
Eco47I GGWCC 2 cut(s) 523, 668
Eco81I CCTNAGG 1 cut(s) 750
EcoO109I RGGNCCY 2 cut(s) 668, 1706
EcoRI GAATTC 1 cut(s) 1376
EcoRII CCWGG 4 cut(s) 1552, 1584, 1733, 1906
EcoRV GATATC 3 cut(s) 1261, 1306, 1562
EcoT14I CCWWGG 1 cut(s) 1064
EcoT22I ATGCAT 1 cut(s) 1879
EcoT38I GRGCYC 1 cut(s) 1710
ErhI CCWWGG 1 cut(s) 1064
FaeI CATG 8 cut(s) 115, 237, 362, 1068, 1191, 1546, 1552, 1654
FalI AAGNNNNNCTT 2 cut(s) 1229, 1261
FatI CATG 8 cut(s) 111, 233, 358, 1064, 1187, 1542, 1548, 1650
FauI CCCGC 1 cut(s) 1606
FauNDI CATATG 1 cut(s) 1798
FblI GTMKAC 2 cut(s) 126, 777
FriOI GRGCYC 1 cut(s) 1710
FspBI CTAG 8 cut(s) 72, 921, 932, 1167, 1212, 1272, 1622, 1941
GlaI GCGC 2 cut(s) 503, 1761
GsuI CTGGAG 1 cut(s) 1885
HaeIII GGCC 4 cut(s) 822, 1547, 1637, 1708
HapII CCGG 5 cut(s) 66, 264, 576, 1398, 1539
HgaI GACGC 1 cut(s) 347
HhaI GCGC 2 cut(s) 504, 1762
Hin1II CATG 8 cut(s) 115, 237, 362, 1068, 1191, 1546, 1552, 1654
Hin6I GCGC 2 cut(s) 502, 1760
HinP1I GCGC 2 cut(s) 502, 1760
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 6 cut(s) 293, 298, 583, 793, 851, 1327
HpaII CCGG 5 cut(s) 66, 264, 576, 1398, 1539
HphI GGTGA 3 cut(s) 434, 590, 1855
Hpy166II GTNNAC 6 cut(s) 127, 650, 778, 985, 1164, 1927
Hpy188I TCNGA 2 cut(s) 856, 1607
Hpy8I GTNNAC 6 cut(s) 127, 650, 778, 985, 1164, 1927
Hpy99I CGWCG 2 cut(s) 341, 521
HpyAV CCTTC 5 cut(s) 137, 496, 1471, 1540, 1792
HpyCH4III ACNGT 6 cut(s) 214, 289, 324, 383, 548, 1525
HpyCH4IV ACGT 3 cut(s) 178, 279, 519
HpyF3I CTNAG 5 cut(s) 271, 327, 414, 750, 1666
HpySE526I ACGT 3 cut(s) 178, 279, 519
Hsp92II CATG 8 cut(s) 115, 237, 362, 1068, 1191, 1546, 1552, 1654
HspAI GCGC 2 cut(s) 502, 1760
KroI GCCGGC 1 cut(s) 1538
KroNI GCCGGC 1 cut(s) 1540
Kzo9I GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
LweI GCATC 5 cut(s) 145, 1086, 1198, 1384, 1432
MaeI CTAG 8 cut(s) 72, 921, 932, 1167, 1212, 1272, 1622, 1941
MaeII ACGT 3 cut(s) 178, 279, 519
MaeIII GTNAC 9 cut(s) 82, 266, 280, 354, 383, 548, 878, 1525, 1677
MalI GATC 8 cut(s) 6, 426, 704, 862, 1062, 1148, 1339, 1812
MboI GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
MboII GAAGA 9 cut(s) 173, 554, 728, 998, 1112, 1125, 1379, 1397, 1873
MflI RGATCY 4 cut(s) 4, 860, 1060, 1146
MhlI GDGCHC 3 cut(s) 381, 1710, 1929
MlsI TGGCCA 3 cut(s) 822, 1547, 1637
MluNI TGGCCA 3 cut(s) 822, 1547, 1637
MlyI GAGTC 3 cut(s) 577, 787, 845
MmeI TCCRAC 1 cut(s) 224
Mox20I TGGCCA 3 cut(s) 822, 1547, 1637
Mph1103I ATGCAT 1 cut(s) 1879
MroNI GCCGGC 1 cut(s) 1538
MroXI GAANNNNTTC 2 cut(s) 180, 297
MscI TGGCCA 3 cut(s) 822, 1547, 1637
MseI TTAA 7 cut(s) 104, 194, 507, 840, 1286, 1484, 1742
MslI CAYNNNNRTG 5 cut(s) 287, 711, 933, 1547, 1686
Msp20I TGGCCA 3 cut(s) 822, 1547, 1637
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 5 cut(s) 66, 264, 576, 1398, 1539
MspR9I CCNGG 4 cut(s) 1554, 1586, 1735, 1908
Mva1269I GAATGC 2 cut(s) 812, 1877
MvaI CCWGG 4 cut(s) 1554, 1586, 1735, 1908
MvnI CGCG 1 cut(s) 1923
NaeI GCCGGC 1 cut(s) 1540
NcoI CCATGG 1 cut(s) 1064
NdeI CATATG 1 cut(s) 1798
NdeII GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
NgoMIV GCCGGC 1 cut(s) 1538
NheI GCTAGC 2 cut(s) 1271, 1940
NlaIII CATG 8 cut(s) 115, 237, 362, 1068, 1191, 1546, 1552, 1654
NlaIV GGNNCC 4 cut(s) 6, 1429, 1453, 1708
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 4 cut(s) 280, 383, 548, 878
NsiI ATGCAT 1 cut(s) 1879
NspI RCATGY 2 cut(s) 237, 362
NspV TTCGAA 5 cut(s) 629, 997, 1054, 1320, 1365
OliI CACNNNNGTG 1 cut(s) 287
PciI ACATGT 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 2 cut(s) 812, 1877
PdiI GCCGGC 1 cut(s) 1540
PdmI GAANNNNTTC 2 cut(s) 180, 297
PfeI GAWTC 3 cut(s) 293, 298, 1327
PflFI GACNNNGTC 2 cut(s) 521, 1657
PflMI CCANNNNNTGG 2 cut(s) 662, 1591
PleI GAGTC 3 cut(s) 577, 787, 845
PpsI GAGTC 3 cut(s) 577, 787, 845
PpuMI RGGWCCY 1 cut(s) 668
PscI ACATGT 1 cut(s) 358
PsiI TTATAA 1 cut(s) 1355
Psp5II RGGWCCY 1 cut(s) 668
Psp6I CCWGG 4 cut(s) 1552, 1584, 1733, 1906
PspGI CCWGG 4 cut(s) 1552, 1584, 1733, 1906
PspN4I GGNNCC 4 cut(s) 6, 1429, 1453, 1708
PspOMI GGGCCC 1 cut(s) 1706
PspPI GGNCC 4 cut(s) 523, 668, 1706, 1707
PspPPI RGGWCCY 1 cut(s) 668
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 4 cut(s) 4, 860, 1060, 1146
PsyI GACNNNGTC 2 cut(s) 521, 1657
RseI CAYNNNNRTG 5 cut(s) 287, 711, 933, 1547, 1686
SaqAI TTAA 7 cut(s) 104, 194, 507, 840, 1286, 1484, 1742
Sau3AI GATC 8 cut(s) 4, 424, 702, 860, 1060, 1146, 1337, 1810
Sau96I GGNCC 4 cut(s) 523, 668, 1706, 1707
SchI GAGTC 3 cut(s) 577, 787, 845
ScrFI CCNGG 4 cut(s) 1554, 1586, 1735, 1908
SduI GDGCHC 3 cut(s) 381, 1710, 1929
SfaNI GCATC 5 cut(s) 145, 1086, 1198, 1384, 1432
SfcI CTRYAG 1 cut(s) 696
SfuI TTCGAA 5 cut(s) 629, 997, 1054, 1320, 1365
SinI GGWCC 2 cut(s) 523, 668
SmiMI CAYNNNNRTG 5 cut(s) 287, 711, 933, 1547, 1686
SpeI ACTAGT 1 cut(s) 1166
SsiI CCGC 3 cut(s) 408, 1276, 1613
SspI AATATT 3 cut(s) 101, 192, 636
SspMI CTAG 8 cut(s) 72, 921, 932, 1167, 1212, 1272, 1622, 1941
StyD4I CCNGG 4 cut(s) 1552, 1584, 1733, 1906
StyI CCWWGG 1 cut(s) 1064
TaaI ACNGT 6 cut(s) 214, 289, 324, 383, 548, 1525
TaiI ACGT 3 cut(s) 181, 282, 522
TauI GCSGC 1 cut(s) 1278
TfiI GAWTC 3 cut(s) 293, 298, 1327
Tru1I TTAA 7 cut(s) 104, 194, 507, 840, 1286, 1484, 1742
Tru9I TTAA 7 cut(s) 104, 194, 507, 840, 1286, 1484, 1742
TscAI CASTG 7 cut(s) 388, 504, 693, 705, 1198, 1378, 1468
TseFI GTSAC 4 cut(s) 280, 383, 548, 878
Tsp45I GTSAC 4 cut(s) 280, 383, 548, 878
TspDTI ATGAA 8 cut(s) 729, 956, 1113, 1176, 1490, 1774, 1849, 1929
TspGWI ACGGA 1 cut(s) 1139
TspRI CASTG 7 cut(s) 388, 504, 693, 705, 1198, 1378, 1468
Tth111I GACNNNGTC 2 cut(s) 521, 1657
Van91I CCANNNNNTGG 2 cut(s) 662, 1591
VneI GTGCAC 1 cut(s) 1925
VpaK11BI GGWCC 2 cut(s) 523, 668
XapI RAATTY 2 cut(s) 1183, 1376
XbaI TCTAGA 2 cut(s) 920, 931
XceI RCATGY 2 cut(s) 237, 362
XmiI GTMKAC 2 cut(s) 126, 777
XmnI GAANNNNTTC 2 cut(s) 180, 297
XspI CTAG 8 cut(s) 72, 921, 932, 1167, 1212, 1272, 1622, 1941
Zsp2I ATGCAT 1 cut(s) 1879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.