Rh7BG431300

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000489
Physical Location & Seq
Reverse (-)
49340769 .. 49341191
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG431300.1

Sequence Viewer

Length: 423 bp
ATGGAGATCAGTAGTCCAACATCGGCCTATCATGCCACGATACTGGAGGAAACCAACGCAGTGTTCTGTTCTGAATGGAATCAGCAGAAATCTACACTAGTTAAGAGAAGCTTAAGCGGCATGGATACTAAGGTGTTCAAGGCGGCAGGAGAGGGCAATATTGATGCCCTTAGAGAACATAGTGATCATCTTCACCAAATATTGACTCCAACCAAAAACACAGTCCTCCATGTATATATAGCTTGCGTAGGCAGTGCAAGGTTGACAGAGTCTAAAGAATTGCTGAAATCAGCCGAGGTTGTAAGGGAGATGCTTAAAATGTGCCAGCGGCTACTATTGCAGCCAAACGAGAGCGGTGATACTGCCTTACACTTGGCGGCAAGACACGGACGTGCTGACATAGTTACTACTAAAGCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

140

Amino Acids

15.44

Weight (kDa)

7.05

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 48 - 136 1e-05 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 354
AciI CCGC 5 cut(s) 117, 143, 328, 354, 377
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 1 cut(s) 139
AhlI ACTAGT 1 cut(s) 97
AjiI CACGTC 1 cut(s) 392
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 2 cut(s) 111, 242
AluI AGCT 2 cut(s) 111, 242
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AsuHPI GGTGA 2 cut(s) 185, 368
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BbvI GCAGC 1 cut(s) 352
BciVI GTATCC 1 cut(s) 118
BclI TGATCA 1 cut(s) 184
BcuI ACTAGT 1 cut(s) 97
BfaI CTAG 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 112
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 5 cut(s) 118, 144, 329, 341, 378
BlsI GCNGC 5 cut(s) 119, 145, 330, 342, 379
BmgBI CACGTC 1 cut(s) 392
BmsI GCATC 2 cut(s) 154, 300
BpmI CTGGAG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 1 cut(s) 26
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 6, 184
BspACI CCGC 5 cut(s) 117, 143, 328, 354, 377
BspANI GGCC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 2 cut(s) 6, 184
Bst4CI ACNGT 1 cut(s) 223
BstAFI CTTAAG 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 244, 326
BstDEI CTNAG 2 cut(s) 129, 170
BstKTI GATC 2 cut(s) 9, 187
BstMBI GATC 2 cut(s) 6, 184
BstMWI GCNNNNNNNGC 3 cut(s) 32, 117, 337
BstV1I GCAGC 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 26
BtrI CACGTC 1 cut(s) 392
BtsI GCAGTG 2 cut(s) 66, 259
BtsIMutI CAGTG 2 cut(s) 66, 259
Cac8I GCNNGC 2 cut(s) 244, 326
CviAII CATG 3 cut(s) 32, 121, 230
CviJI RGCY 6 cut(s) 26, 111, 242, 293, 331, 343
CviKI_1 RGCY 6 cut(s) 26, 111, 242, 293, 331, 343
DdeI CTNAG 2 cut(s) 129, 170
DpnI GATC 2 cut(s) 8, 186
DpnII GATC 2 cut(s) 6, 184
FaeI CATG 3 cut(s) 35, 124, 233
FaiI YATR 8 cut(s) 33, 122, 180, 231, 235, 237, 239, 401
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 3 cut(s) 31, 120, 229
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 5 cut(s) 118, 144, 329, 341, 378
Fsp4HI GCNGC 5 cut(s) 118, 144, 329, 341, 378
FspBI CTAG 1 cut(s) 98
GluI GCNGC 5 cut(s) 118, 144, 329, 341, 378
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 26
Hin1II CATG 3 cut(s) 35, 124, 233
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 3 cut(s) 79, 205, 269
HphI GGTGA 2 cut(s) 185, 368
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 2 cut(s) 257, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 117, 337
HpyF3I CTNAG 2 cut(s) 129, 170
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 3 cut(s) 35, 124, 233
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 6, 184
LpnPI CCDG 3 cut(s) 29, 132, 338
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 2 cut(s) 154, 300
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 8, 186
MbiI CCGCTC 1 cut(s) 354
MboI GATC 2 cut(s) 6, 184
MboII GAAGA 1 cut(s) 182
MluCI AATT 1 cut(s) 278
MlyI GAGTC 2 cut(s) 199, 278
MmeI TCCRAC 2 cut(s) 41, 233
MnlI CCTC 4 cut(s) 40, 145, 236, 289
MseI TTAA 3 cut(s) 102, 113, 315
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 328
MspCI CTTAAG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 32, 117, 337
NdeII GATC 2 cut(s) 6, 184
NlaIII CATG 3 cut(s) 35, 124, 233
NmeAIII GCCGAG 1 cut(s) 319
OliI CACNNNNGTG 1 cut(s) 390
PfeI GAWTC 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 268
PkrI GCNGC 5 cut(s) 119, 145, 330, 342, 379
PleI GAGTC 2 cut(s) 199, 277
PpsI GAGTC 2 cut(s) 199, 277
PsyI GACNNNGTC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 3 cut(s) 102, 113, 315
SatI GCNGC 5 cut(s) 118, 144, 329, 341, 378
Sau3AI GATC 2 cut(s) 6, 184
SchI GAGTC 2 cut(s) 199, 278
SetI ASST 7 cut(s) 113, 135, 244, 263, 300, 394, 422
SfaNI GCATC 2 cut(s) 154, 300
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 97
Sse9I AATT 1 cut(s) 278
SsiI CCGC 5 cut(s) 117, 143, 328, 354, 377
SspI AATATT 2 cut(s) 160, 201
SspMI CTAG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 394
TasI AATT 1 cut(s) 278
TauI GCSGC 4 cut(s) 120, 146, 331, 380
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 3 cut(s) 102, 113, 315
Tru9I TTAA 3 cut(s) 102, 113, 315
TscAI CASTG 2 cut(s) 66, 259
TseI GCWGC 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 2 cut(s) 66, 259
Tth111I GACNNNGTC 1 cut(s) 268
Vha464I CTTAAG 1 cut(s) 112
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.