Rroxscaffold_2G00144810

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000489
Physical Location & Seq
Forward (+)
82702321 .. 82703235
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144810.1

Sequence Viewer

Length: 495 bp
ATGGCTGCCGAGAGGGGATATCGCGATTTGGTTTTTGAAATGCTTGACGCTTGCATGAATCCATCCTACCAAGGACCCGATGGTTTAACAGCTTTACACATTGCAGCTACCTACGGTGATGAAAAAACAATGAGAAGATTACTTGAGACGGAAAGGATGCTAGCAATAGCATTCGACAAACGAGGATCGACTCCACTTCATAGGGCTGCATCTTGGGGTCATGTTTCAATTGTGAAACAAATACTAGAATGTGATCATTCCACTGCCTACGTTGGCGACATTGACAAGAGAACACCCGCTAATTATGCAGCGGAAGAAGGGCATGTAGATGGTCGCAATGTCTTGCATTTTGCAATTATCAAAAATAAAGATAAAGTAGAAGAGTTTGTTCGAAAAGATCCATGGCTTAGTAGCGTCCTTTTAAATGGCAAAGATTCTGCCCGAAACACACCTCTCCATATTATATTGCTACTTCTCAAAAATACGAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

164

Amino Acids

18.39

Weight (kDa)

7.06

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 1 - 85 5e-15 Ankyrin repeats (3 copies)
Ank_4 PF13637 32 - 79 2.3e-08 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 297, 311
AclWI GGATC 2 cut(s) 193, 392
AgsI TTSAA 2 cut(s) 38, 228
AluBI AGCT 2 cut(s) 92, 107
AluI AGCT 2 cut(s) 92, 107
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 193, 392
ApeKI GCWGC 4 cut(s) 5, 104, 206, 308
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 128
AsuII TTCGAA 1 cut(s) 391
AsuNHI GCTAGC 1 cut(s) 160
AvaII GGWCC 1 cut(s) 74
BbvI GCAGC 3 cut(s) 116, 193, 320
BccI CCATC 3 cut(s) 70, 74, 323
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 161, 245
BisI GCNGC 4 cut(s) 6, 105, 207, 309
BlsI GCNGC 4 cut(s) 7, 106, 208, 310
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 2 cut(s) 147, 218
BmtI GCTAGC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 70, 401
Bse3DI GCAATG 2 cut(s) 99, 343
BseDI CCNNGG 2 cut(s) 70, 401
BseGI GGATG 2 cut(s) 62, 162
BseMI GCAATG 2 cut(s) 99, 343
BseXI GCAGC 3 cut(s) 116, 193, 320
Bsh1236I CGCG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsmI GAATGC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 391
Bsp143I GATC 3 cut(s) 185, 253, 397
Bsp19I CCATGG 1 cut(s) 401
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 2 cut(s) 297, 311
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 164
BspPI GGATC 2 cut(s) 193, 392
BspT104I TTCGAA 1 cut(s) 391
BsrDI GCAATG 2 cut(s) 99, 343
BssECI CCNNGG 2 cut(s) 70, 401
BssMI GATC 3 cut(s) 185, 253, 397
BssT1I CCWWGG 2 cut(s) 70, 401
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 52, 162
BstDEI CTNAG 1 cut(s) 407
BstDSI CCRYGG 1 cut(s) 401
BstF5I GGATG 2 cut(s) 62, 162
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 3 cut(s) 188, 256, 400
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 3 cut(s) 185, 253, 397
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 326
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 116, 193, 320
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 401
BtsCI GGATG 2 cut(s) 62, 162
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 52, 162
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 2 cut(s) 56, 403
CviAII CATG 4 cut(s) 55, 221, 323, 402
CviJI RGCY 6 cut(s) 5, 92, 107, 206, 406, 491
CviKI_1 RGCY 6 cut(s) 5, 92, 107, 206, 406, 491
DdeI CTNAG 1 cut(s) 407
DpnI GATC 3 cut(s) 187, 255, 399
DpnII GATC 3 cut(s) 185, 253, 397
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 2 cut(s) 70, 401
Eco32I GATATC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
EcoRV GATATC 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 70, 401
ErhI CCWWGG 2 cut(s) 70, 401
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 4 cut(s) 58, 224, 326, 405
FaiI YATR 8 cut(s) 56, 201, 222, 306, 324, 403, 459, 464
FatI CATG 4 cut(s) 54, 220, 322, 401
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 6, 105, 207, 309
FokI GGATG 2 cut(s) 49, 169
Fsp4HI GCNGC 4 cut(s) 6, 105, 207, 309
FspBI CTAG 2 cut(s) 161, 245
GluI GCNGC 4 cut(s) 6, 105, 207, 309
HgaI GACGC 2 cut(s) 56, 403
Hin1II CATG 4 cut(s) 58, 224, 326, 405
HinfI GANTC 3 cut(s) 58, 190, 434
HphI GGTGA 1 cut(s) 128
Hpy188III TCNNGA 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 311, 481
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 6 cut(s) 54, 104, 209, 308, 346, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 4 cut(s) 58, 224, 326, 405
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 185, 253, 397
Lsp1109I GCAGC 3 cut(s) 116, 193, 320
LweI GCATC 2 cut(s) 147, 218
MaeI CTAG 2 cut(s) 161, 245
MaeII ACGT 1 cut(s) 270
MalI GATC 3 cut(s) 187, 255, 399
MboI GATC 3 cut(s) 185, 253, 397
MboII GAAGA 3 cut(s) 147, 326, 392
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 1 cut(s) 397
MluCI AATT 3 cut(s) 228, 301, 354
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 3 cut(s) 6, 176, 462
MseI TTAA 2 cut(s) 86, 422
MslI CAYNNNNRTG 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 311
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 170
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 401
NdeII GATC 3 cut(s) 185, 253, 397
NheI GCTAGC 1 cut(s) 160
NlaIII CATG 4 cut(s) 58, 224, 326, 405
NlaIV GGNNCC 1 cut(s) 76
NmeAIII GCCGAG 1 cut(s) 34
NruI TCGCGA 1 cut(s) 24
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 391
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 58, 434
PkrI GCNGC 4 cut(s) 7, 106, 208, 310
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PsuI RGATCY 1 cut(s) 397
RruI TCGCGA 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 2 cut(s) 86, 422
SatI GCNGC 4 cut(s) 6, 105, 207, 309
Sau3AI GATC 3 cut(s) 185, 253, 397
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 184
SetI ASST 5 cut(s) 94, 109, 113, 273, 454
SfaNI GCATC 2 cut(s) 147, 218
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 228, 301, 354
SsiI CCGC 2 cut(s) 297, 311
SspMI CTAG 2 cut(s) 161, 245
StyI CCWWGG 2 cut(s) 70, 401
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 174, 188, 391
TasI AATT 3 cut(s) 228, 301, 354
TfiI GAWTC 2 cut(s) 58, 434
Tru1I TTAA 2 cut(s) 86, 422
Tru9I TTAA 2 cut(s) 86, 422
TscAI CASTG 1 cut(s) 268
TseI GCWGC 4 cut(s) 5, 104, 206, 308
TspDTI ATGAA 3 cut(s) 71, 135, 188
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 74
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XspI CTAG 2 cut(s) 161, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.