pycom08g18290

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000489
Physical Location & Seq
Forward (+)
18533925 .. 18534575
651 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18290.1

Sequence Viewer

Length: 651 bp
ATGTTACAGGAAAATGTTGTACAGTACCTGAAGGGGGTTGGTAATAGACCAGCCGTAGGACAAGCTATGACCCCCAAAGTTAAGACAATCAAGGAAGAAAATAATGAGACTACCGGAGGCAATGAAATCAAGGAAGAAAATAATGAGATTAGCAGAGGCAATGACAACAAGGAAGAAAATAATGAAACTAGCGGAGGCAATGAAATCAACAGTGGAGATGAGGACACAAAAGAGGTGAATTTAATAGTGGCCACACTCATAGCAACTGTAACTTTTGCAGCTGCCTTTACCATGCCTGGTGGCTACATCAACGATGAGGGCCACGACCAAGGCAGTGCAGTTCTAGTAAGAAACGCAGCGTTCAGAACATTTGTAATCGCAGATACTATATCCATGATGTTATCCAGTATTTCCGTCCTTCTCCACCTTTCCGTGGTTACGGCTAAGAACCAGCAGAAGAAGGAGAAAACGTTCATGGTGGAGTCGTATCTTATTACTATTGCCATGTTGGGAATGATTGTGGCCTATGTTACAGGTACTTATGCAGTGTTATCACACTCCCGAGGGATTGCTATTGCCACTTGCGTTATTGGCTCTGCCTTGTCGTCTCTCTTTATGTTTTTATATTACACTGCTTCAAAAGGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2

Protein Analysis

217

Amino Acids

23.36

Weight (kDa)

5.14

Isoelectric Point (pI)

23.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 74 - 183 9.1e-32 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclI AACGTT 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 21, 26, 538
AfiI CCNNNNNNNGG 3 cut(s) 34, 56, 433
AgsI TTSAA 1 cut(s) 639
AjnI CCWGG 1 cut(s) 295
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 2 cut(s) 65, 281
AluI AGCT 2 cut(s) 65, 281
Alw26I GTCTC 2 cut(s) 101, 612
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 3 cut(s) 249, 319, 522
ApeKI GCWGC 3 cut(s) 278, 281, 356
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 561
BalI TGGCCA 1 cut(s) 251
BbvI GCAGC 3 cut(s) 268, 290, 368
BccI CCATC 1 cut(s) 639
BceAI ACGGC 2 cut(s) 38, 456
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 101, 612
BfaI CTAG 2 cut(s) 189, 344
BisI GCNGC 3 cut(s) 279, 282, 357
BlsI GCNGC 3 cut(s) 280, 283, 358
Bme1390I CCNGG 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 328, 432, 562
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 56, 433
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 3 cut(s) 127, 166, 205
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 3 cut(s) 328, 432, 562
BseGI GGATG 1 cut(s) 650
BseLI CCNNNNNNNGG 3 cut(s) 34, 56, 433
BseMI GCAATG 3 cut(s) 127, 166, 205
BseNI ACTGG 1 cut(s) 405
BseXI GCAGC 3 cut(s) 268, 290, 368
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 251, 321, 524
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 3 cut(s) 34, 56, 433
BsmAI GTCTC 2 cut(s) 101, 612
BsmBI CGTCTC 1 cut(s) 612
BsnI GGCC 3 cut(s) 251, 321, 524
BsoBI CYCGRG 1 cut(s) 561
Bsp1407I TGTACA 1 cut(s) 19
BspACI CCGC 1 cut(s) 192
BspANI GGCC 3 cut(s) 251, 321, 524
BsrDI GCAATG 3 cut(s) 127, 166, 205
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 3 cut(s) 328, 432, 562
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 24, 212, 268
BstAUI TGTACA 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 650
BstMAI GTCTC 2 cut(s) 101, 612
BstMWI GCNNNNNNNGC 1 cut(s) 591
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 268, 290, 368
BsuRI GGCC 3 cut(s) 251, 321, 524
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 650
BtsI GCAGTG 3 cut(s) 340, 552, 630
BtsIMutI CAGTG 4 cut(s) 217, 340, 552, 630
CaiI CAGNNNCTG 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 3 cut(s) 20, 25, 537
CviAII CATG 4 cut(s) 292, 394, 475, 505
CviJI RGCY 9 cut(s) 53, 65, 251, 281, 303, 321, 443, 524, 594
CviKI_1 RGCY 9 cut(s) 53, 65, 251, 281, 303, 321, 443, 524, 594
CviQI GTAC 3 cut(s) 20, 25, 537
DdeI CTNAG 1 cut(s) 444
EaeI YGGCCR 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 4 cut(s) 295, 397, 478, 508
FatI CATG 4 cut(s) 291, 393, 474, 504
Fnu4HI GCNGC 3 cut(s) 279, 282, 357
Fsp4HI GCNGC 3 cut(s) 279, 282, 357
FspBI CTAG 2 cut(s) 189, 344
GluI GCNGC 3 cut(s) 279, 282, 357
HaeIII GGCC 3 cut(s) 251, 321, 524
HapII CCGG 1 cut(s) 114
Hin1II CATG 4 cut(s) 295, 397, 478, 508
HinfI GANTC 1 cut(s) 482
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 365
Hpy188III TCNNGA 1 cut(s) 561
HpyAV CCTTC 3 cut(s) 25, 428, 454
HpyCH4III ACNGT 3 cut(s) 24, 212, 268
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 3 cut(s) 278, 338, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 591
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 4 cut(s) 295, 397, 478, 508
LpnPI CCDG 8 cut(s) 41, 63, 127, 282, 309, 418, 464, 519
Lsp1109I GCAGC 3 cut(s) 268, 290, 368
MaeI CTAG 2 cut(s) 189, 344
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 4 cut(s) 3, 268, 436, 529
MboII GAAGA 4 cut(s) 107, 146, 185, 469
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 1 cut(s) 238
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 7 cut(s) 110, 149, 188, 214, 226, 310, 557
Mox20I TGGCCA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 470
MscI TGGCCA 1 cut(s) 251
MseI TTAA 2 cut(s) 81, 242
Msp20I TGGCCA 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 591
NlaIII CATG 4 cut(s) 295, 397, 478, 508
PdmI GAANNNNTTC 1 cut(s) 470
PkrI GCNGC 3 cut(s) 280, 283, 358
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp1406I AACGTT 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspPI GGNCC 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 3 cut(s) 21, 26, 538
RsaNI GTAC 3 cut(s) 20, 25, 537
SaqAI TTAA 2 cut(s) 81, 242
SatI GCNGC 3 cut(s) 279, 282, 357
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 297
SetI ASST 7 cut(s) 30, 67, 237, 283, 429, 473, 538
Sse9I AATT 1 cut(s) 238
SsiI CCGC 1 cut(s) 192
SspMI CTAG 2 cut(s) 189, 344
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 3 cut(s) 24, 212, 268
TaiI ACGT 1 cut(s) 473
TasI AATT 1 cut(s) 238
TatI WGTACW 1 cut(s) 19
Tru1I TTAA 2 cut(s) 81, 242
Tru9I TTAA 2 cut(s) 81, 242
TscAI CASTG 4 cut(s) 217, 340, 552, 637
TseI GCWGC 3 cut(s) 278, 281, 356
TspDTI ATGAA 4 cut(s) 138, 198, 216, 463
TspGWI ACGGA 2 cut(s) 403, 421
TspRI CASTG 4 cut(s) 217, 340, 552, 637
XapI RAATTY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 2 cut(s) 189, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.