Rroxscaffold_6G00396730

ankyrin repeat-containing protein At5g02620-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000489
Physical Location & Seq
Forward (+)
18186785 .. 18188562
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396730.1

Sequence Viewer

Length: 402 bp
ATGAGGGTGTTGTTTATGTTTCGTGAGGAGAGAGACACATCCATACATGAGGTAGTGCGGTTTAATCCTTCTAACGTGGTGGAGATATTGAGCACACATGACCCCAACTTTTACTACCCTGCCAATGTTATCGGAGAGACTCTTCTTTACCTAGCTGCCGAAAGGGGATATAGTAATTTGGTTTCTAAAATCCTAAACATTTGCAAAAATCCATCTTATCAATGCCCCAATGGTAAAATGGCTTTGTTTGCTACTGTTATATGGAATGGTCAAGGCATGTCCTCCATTGGTCACACTTCAATTGTGAAACAGCTTCTCGAGTATGATAGATGTGGTTCGTACGTAAGGGAGAAACATCATAAGAGGACAGCTCTCCACTTTGCAACATCTAGAGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

133

Amino Acids

15.19

Weight (kDa)

9.07

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 49 - 132 3.2e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 58
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 1 cut(s) 300
AluBI AGCT 3 cut(s) 155, 313, 371
AluI AGCT 3 cut(s) 155, 313, 371
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 27, 131
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 27, 131
BfaI CTAG 2 cut(s) 152, 390
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BsaAI YACGTR 1 cut(s) 343
BseGI GGATG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 317
BsiWI CGTACG 1 cut(s) 339
BsmAI GTCTC 2 cut(s) 27, 131
BsnI GGCC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 95
BspACI CCGC 1 cut(s) 58
BspANI GGCC 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 343
BstF5I GGATG 1 cut(s) 38
BstMAI GTCTC 2 cut(s) 27, 131
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 280
BstSNI TACGTA 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 340
CviAII CATG 4 cut(s) 47, 98, 277, 399
CviJI RGCY 5 cut(s) 155, 242, 313, 371, 397
CviKI_1 RGCY 5 cut(s) 155, 242, 313, 371, 397
CviQI GTAC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco105I TACGTA 1 cut(s) 343
Eco88I CYCGRG 1 cut(s) 317
FaeI CATG 4 cut(s) 50, 101, 280, 402
FatI CATG 4 cut(s) 46, 97, 276, 398
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 2 cut(s) 152, 390
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 397
Hin1II CATG 4 cut(s) 50, 101, 280, 402
HinfI GANTC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 3 cut(s) 23, 317, 390
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 2 cut(s) 75, 342
HpyCH4V TGCA 2 cut(s) 204, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 75, 342
Hsp92II CATG 4 cut(s) 50, 101, 280, 402
LpnPI CCDG 1 cut(s) 132
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 2 cut(s) 152, 390
MaeII ACGT 2 cut(s) 75, 342
MaeIII GTNAC 1 cut(s) 290
MboII GAAGA 1 cut(s) 134
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 175, 300
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 5 cut(s) 19, 43, 292, 357, 386
MseI TTAA 1 cut(s) 63
MunI CAATTG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 248
NlaIII CATG 4 cut(s) 50, 101, 280, 402
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 317
Pfl23II CGTACG 1 cut(s) 339
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 343
PspLI CGTACG 1 cut(s) 339
PspPI GGNCC 1 cut(s) 395
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 95
SetI ASST 7 cut(s) 54, 78, 153, 157, 315, 345, 373
Sfr274I CTCGAG 1 cut(s) 317
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SnaBI TACGTA 1 cut(s) 343
Sse9I AATT 2 cut(s) 175, 300
SsiI CCGC 1 cut(s) 58
SspMI CTAG 2 cut(s) 152, 390
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 2 cut(s) 78, 345
TaqI TCGA 1 cut(s) 318
TasI AATT 2 cut(s) 175, 300
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 389
XceI RCATGY 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 317
XspI CTAG 2 cut(s) 152, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.