MD02G1014000.v1.1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000489
Physical Location & Seq
Forward (+)
918708 .. 928517
9810 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1014000.v1.1.491

Sequence Viewer

Length: 399 bp
ATGATATTGTGTAAAAATATCTGTCACCCCCTCAACATGGATGCCTCTAATATGGCTAATCAGTCAGACCGACATCCAACCGATCGGGTCGGTGACCAGATCGAGCTAGCAGATCAGACCGACATCCAAGAAGCTGCAAAATTAGAAGGCAACAATATTACAGTTTTAACAAGTAGCATGGATCCTGATGCTTTCAACGCTGCAAAACAAGGCAATCTCGATGTCCTTAAGGAACATGGCGAGAATCTGGACAAAATATTGACTGCAACCAAGAACACAGTCCTTCATATCTATACAACATGCTATAGGCACCCAACGTATGAAGGATCTGGCGATGAGATACTTGAGTCAATGAACACTGTGAACGGTATCCTTAAAATGTGTCCAGTATTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

133

Amino Acids

14.57

Weight (kDa)

4.78

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 309
AclWI GGATC 3 cut(s) 176, 189, 334
AfiI CCNNNNNNNGG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 2 cut(s) 106, 134
AluI AGCT 2 cut(s) 106, 134
AlwI GGATC 3 cut(s) 176, 189, 334
ApeKI GCWGC 2 cut(s) 134, 200
AsuHPI GGTGA 2 cut(s) 17, 104
AsuNHI GCTAGC 1 cut(s) 106
BaeI ACNNNNGTAYC 2 cut(s) 332, 365
BamHI GGATCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 121, 187
BciVI GTATCC 1 cut(s) 380
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 304
BfrI CTTAAG 1 cut(s) 227
BfuI GTATCC 1 cut(s) 380
BisI GCNGC 2 cut(s) 135, 201
BlsI GCNGC 2 cut(s) 136, 202
BmiI GGNNCC 2 cut(s) 183, 311
BmsI GCATC 2 cut(s) 31, 178
BmtI GCTAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 386
BseGI GGATG 3 cut(s) 46, 73, 123
BseLI CCNNNNNNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 121, 187
Bsh1285I CGRYCG 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 309
BsiEI CGRYCG 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 37
Bsp143I GATC 5 cut(s) 82, 99, 112, 181, 326
BspLI GGNNCC 2 cut(s) 183, 311
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 3 cut(s) 176, 189, 334
BspT107I GGYRCC 1 cut(s) 309
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 386
BssMI GATC 5 cut(s) 82, 99, 112, 181, 326
Bst4CI ACNGT 4 cut(s) 163, 280, 361, 368
BstAFI CTTAAG 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 3 cut(s) 46, 73, 123
BstKTI GATC 5 cut(s) 85, 102, 115, 184, 329
BstMBI GATC 5 cut(s) 82, 99, 112, 181, 326
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 121, 187
BstX2I RGATCY 2 cut(s) 181, 326
BstYI RGATCY 2 cut(s) 181, 326
BsuI GTATCC 1 cut(s) 380
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 3 cut(s) 46, 73, 123
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 108
CviAII CATG 4 cut(s) 37, 178, 236, 300
CviJI RGCY 3 cut(s) 56, 106, 134
CviKI_1 RGCY 3 cut(s) 56, 106, 134
DpnI GATC 5 cut(s) 84, 101, 114, 183, 328
DpnII GATC 5 cut(s) 82, 99, 112, 181, 326
Eco91I GGTNACC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 92
FaeI CATG 4 cut(s) 40, 181, 239, 303
FatI CATG 4 cut(s) 36, 177, 235, 299
Fnu4HI GCNGC 2 cut(s) 135, 201
FokI GGATG 3 cut(s) 53, 60, 110
Fsp4HI GCNGC 2 cut(s) 135, 201
FspBI CTAG 1 cut(s) 107
GluI GCNGC 2 cut(s) 135, 201
Hin1II CATG 4 cut(s) 40, 181, 239, 303
HinfI GANTC 2 cut(s) 244, 347
HphI GGTGA 2 cut(s) 17, 104
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 67, 117
Hpy188III TCNNGA 3 cut(s) 185, 218, 248
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 3 cut(s) 140, 293, 317
HpyCH4III ACNGT 4 cut(s) 163, 280, 361, 368
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 137, 203, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 4 cut(s) 40, 181, 239, 303
Kzo9I GATC 5 cut(s) 82, 99, 112, 181, 326
LpnPI CCDG 4 cut(s) 110, 198, 233, 315
Lsp1109I GCAGC 2 cut(s) 121, 187
LweI GCATC 2 cut(s) 31, 178
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 23, 92
MalI GATC 5 cut(s) 84, 101, 114, 183, 328
MboI GATC 5 cut(s) 82, 99, 112, 181, 326
MflI RGATCY 2 cut(s) 181, 326
MluCI AATT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 2 cut(s) 41, 55
MseI TTAA 3 cut(s) 167, 228, 375
MspCI CTTAAG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 5 cut(s) 82, 99, 112, 181, 326
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 4 cut(s) 40, 181, 239, 303
NlaIV GGNNCC 2 cut(s) 183, 311
NmuCI GTSAC 2 cut(s) 23, 92
NspI RCATGY 1 cut(s) 303
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 136, 202
Ple19I CGATCG 1 cut(s) 85
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PspEI GGTNACC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 183, 311
PsuI RGATCY 2 cut(s) 181, 326
PvuI CGATCG 1 cut(s) 85
SaqAI TTAA 3 cut(s) 167, 228, 375
SatI GCNGC 2 cut(s) 135, 201
Sau3AI GATC 5 cut(s) 82, 99, 112, 181, 326
SchI GAGTC 1 cut(s) 356
SetI ASST 3 cut(s) 108, 136, 320
SfaNI GCATC 2 cut(s) 31, 178
SfcI CTRYAG 1 cut(s) 304
SmlI CTYRAG 2 cut(s) 227, 344
SmoI CTYRAG 2 cut(s) 227, 344
Sse9I AATT 1 cut(s) 140
SspI AATATT 2 cut(s) 157, 258
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 4 cut(s) 163, 280, 361, 368
TaiI ACGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 102, 219
TaqII GACCGA 2 cut(s) 84, 134
TasI AATT 1 cut(s) 140
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 167, 228, 375
Tru9I TTAA 3 cut(s) 167, 228, 375
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 2 cut(s) 23, 92
TseI GCWGC 2 cut(s) 134, 200
Tsp45I GTSAC 2 cut(s) 23, 92
TspDTI ATGAA 3 cut(s) 275, 336, 368
TspRI CASTG 1 cut(s) 364
Vha464I CTTAAG 1 cut(s) 227
XceI RCATGY 1 cut(s) 303
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.