pycom02g09070

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000489
Physical Location & Seq
Reverse (-)
6268137 .. 6269495
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09070.1

Sequence Viewer

Length: 792 bp
ATGCTGCATAAATTCAAAGAATCGTACATCATTCTAGCTAATAAGGACAACATAAGCAGCGCACTTCAGCTGATAACATTAATCTTCTATGTCCTGCAGGAAAATATAAAAAAAAATTTACGAGGCAGGTATGGTAGACGAGGTCACAGAGTCAAAAGCCACAACGATGATGGCAATGAAGTGGAGGAGGAAAACCAAGGTAGCAGAGACACTGGAGAAAGCTTAATGAAGGCAAAAGAAACCCAAATGGTGGTGGCTACACTTATAGCAACGGTAACCTTCGCCGCGGGTTTTACCATGCCCGGTGGTTACCATAGCGAAAGCGGATCGGACCAGGGTTCCCCGATTCTATCAAGAAACACAGCGTTCAAAGCATTTGTTATAACAAATACACTAGCCATGGCCATGTCTAGTTGTTCTGTCCTGGTGCTCTTGTATTCCTCCATTTACACAAAACGAAAGTACATGATCCAAACCTCTGTTACGTTTTACATGGTAGTAACTTTGACAATGTTGGCTTTGATTGCAATGTTGATTGCATTCGTTGCTGGCACATACGCAGTACTTGGCGGTCATTCTCCAGGATTAGCCCTTGCAGCTCTTGTGCTTGGCTGCTTTTTCTTCTATTTCTTTGCACATTCCATTCTTTCTTTAGAAAGCAAAATACTAAAGACCCCGCATTTCCTGCACCATTTGTATTTTGGCATTGAATTGCTGATAGGTTACTCACTTTTTGCGCTGCTTAGATCGATAAGCTTGAAGCTACATAACAGGCACCAGCCGACCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

264

Amino Acids

29.27

Weight (kDa)

9.5

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 74 - 188 1.1e-31 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 774
AccB7I CCANNNNNTGG 1 cut(s) 250
AccI GTMKAC 1 cut(s) 136
AccII CGCG 1 cut(s) 287
AciI CCGC 5 cut(s) 285, 287, 324, 570, 677
AclWI GGATC 2 cut(s) 334, 463
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 2 cut(s) 11, 115
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 3 cut(s) 26, 464, 564
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 4 cut(s) 16, 370, 710, 760
AjnI CCWGG 3 cut(s) 333, 423, 580
AluBI AGCT 6 cut(s) 38, 70, 222, 599, 756, 763
AluI AGCT 6 cut(s) 38, 70, 222, 599, 756, 763
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 2 cut(s) 334, 463
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 5 cut(s) 4, 57, 596, 612, 739
ApoI RAATTY 2 cut(s) 11, 115
AseI ATTAAT 1 cut(s) 80
AspLEI GCGC 2 cut(s) 62, 739
AspS9I GGNCC 1 cut(s) 331
AsuC2I CCSGG 1 cut(s) 303
AvaII GGWCC 1 cut(s) 331
BalI TGGCCA 1 cut(s) 404
BanI GGYRCC 1 cut(s) 774
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 4 cut(s) 69, 599, 608, 726
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 3 cut(s) 335, 425, 582
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 3 cut(s) 35, 395, 411
BfmI CTRYAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 117
BisI GCNGC 6 cut(s) 5, 58, 285, 597, 613, 740
BlsI GCNGC 6 cut(s) 6, 59, 286, 598, 614, 741
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 4 cut(s) 303, 335, 425, 582
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 340, 776
BmrFI CCNGG 4 cut(s) 303, 335, 425, 582
BpmI CTGGAG 2 cut(s) 234, 564
BpuMI CCSGG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 749
BsaJI CCNNGG 4 cut(s) 196, 285, 334, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 2 cut(s) 181, 534
BseBI CCWGG 3 cut(s) 335, 425, 582
BseCI ATCGAT 1 cut(s) 749
BseDI CCNNGG 4 cut(s) 196, 285, 334, 399
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 2 cut(s) 181, 534
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 4 cut(s) 69, 599, 608, 726
BsgI GTGCAG 1 cut(s) 671
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 1 cut(s) 404
BshNI GGYRCC 1 cut(s) 774
BshVI ATCGAT 1 cut(s) 749
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 3 cut(s) 326, 468, 746
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 5 cut(s) 285, 287, 324, 570, 677
BspANI GGCC 1 cut(s) 404
BspDI ATCGAT 1 cut(s) 749
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 340, 776
BspMAI CTGCAG 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 334, 463
BspT107I GGYRCC 1 cut(s) 774
BsrDI GCAATG 2 cut(s) 181, 534
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 4 cut(s) 196, 285, 334, 399
BssMI GATC 3 cut(s) 326, 468, 746
BssT1I CCWWGG 2 cut(s) 196, 399
Bst2UI CCWGG 3 cut(s) 335, 425, 582
Bst4CI ACNGT 1 cut(s) 274
BstAPI GCANNNNNTGC 2 cut(s) 545, 685
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 1 cut(s) 743
BstDSI CCRYGG 2 cut(s) 285, 399
BstEII GGTNACC 2 cut(s) 274, 308
BstFNI CGCG 1 cut(s) 287
BstHHI GCGC 2 cut(s) 62, 739
BstKTI GATC 3 cut(s) 329, 471, 749
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 326, 468, 746
BstMWI GCNNNNNNNGC 5 cut(s) 371, 524, 545, 596, 685
BstNI CCWGG 3 cut(s) 335, 425, 582
BstPI GGTNACC 2 cut(s) 274, 308
BstSCI CCNGG 4 cut(s) 301, 333, 423, 580
BstSFI CTRYAG 1 cut(s) 95
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 4 cut(s) 69, 599, 608, 726
Bsu15I ATCGAT 1 cut(s) 749
BsuRI GGCC 1 cut(s) 404
BsuTUI ATCGAT 1 cut(s) 749
BtgI CCRYGG 2 cut(s) 285, 399
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 550
CfoI GCGC 2 cut(s) 62, 739
Cfr13I GGNCC 1 cut(s) 331
Cfr42I CCGCGG 1 cut(s) 288
ClaI ATCGAT 1 cut(s) 749
Csp6I GTAC 3 cut(s) 25, 463, 563
CviAII CATG 5 cut(s) 298, 400, 406, 466, 493
CviQI GTAC 3 cut(s) 25, 463, 563
DdeI CTNAG 1 cut(s) 743
DpnI GATC 3 cut(s) 328, 470, 748
DpnII GATC 3 cut(s) 326, 468, 746
EaeI YGGCCR 1 cut(s) 402
Eco130I CCWWGG 2 cut(s) 196, 399
Eco47I GGWCC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 50
Eco91I GGTNACC 2 cut(s) 274, 308
EcoO65I GGTNACC 2 cut(s) 274, 308
EcoRII CCWGG 3 cut(s) 333, 423, 580
EcoT14I CCWWGG 2 cut(s) 196, 399
ErhI CCWWGG 2 cut(s) 196, 399
FaeI CATG 5 cut(s) 301, 403, 409, 469, 496
FatI CATG 5 cut(s) 297, 399, 405, 465, 492
FauI CCCGC 2 cut(s) 280, 684
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 6 cut(s) 5, 58, 285, 597, 613, 740
Fsp4HI GCNGC 6 cut(s) 5, 58, 285, 597, 613, 740
FspBI CTAG 3 cut(s) 35, 395, 411
GlaI GCGC 2 cut(s) 61, 738
GluI GCNGC 6 cut(s) 5, 58, 285, 597, 613, 740
GsuI CTGGAG 2 cut(s) 234, 564
HaeIII GGCC 1 cut(s) 404
HapII CCGG 1 cut(s) 303
HhaI GCGC 2 cut(s) 62, 739
Hin1II CATG 5 cut(s) 301, 403, 409, 469, 496
Hin6I GCGC 2 cut(s) 60, 737
HinP1I GCGC 2 cut(s) 60, 737
HindIII AAGCTT 2 cut(s) 220, 754
HinfI GANTC 3 cut(s) 20, 150, 346
HpaII CCGG 1 cut(s) 303
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 223, 289
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 7 cut(s) 7, 97, 527, 539, 596, 635, 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 524, 545, 596, 685
HpyF3I CTNAG 1 cut(s) 743
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 5 cut(s) 301, 403, 409, 469, 496
HspAI GCGC 2 cut(s) 60, 737
KspI CCGCGG 1 cut(s) 288
Kzo9I GATC 3 cut(s) 326, 468, 746
Lsp1109I GCAGC 4 cut(s) 69, 599, 608, 726
MaeI CTAG 3 cut(s) 35, 395, 411
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 6 cut(s) 143, 274, 308, 481, 499, 722
MalI GATC 3 cut(s) 328, 470, 748
MboI GATC 3 cut(s) 326, 468, 746
MboII GAAGA 2 cut(s) 76, 613
MhlI GDGCHC 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 3 cut(s) 11, 115, 710
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 6 cut(s) 116, 134, 178, 181, 451, 487
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 2 cut(s) 80, 224
MslI CAYNNNNRTG 2 cut(s) 165, 404
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 2 cut(s) 70, 287
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 4 cut(s) 303, 335, 425, 582
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 3 cut(s) 335, 425, 582
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 5 cut(s) 371, 524, 545, 596, 685
NciI CCSGG 1 cut(s) 303
NcoI CCATGG 1 cut(s) 399
NdeII GATC 3 cut(s) 326, 468, 746
NlaIII CATG 5 cut(s) 301, 403, 409, 469, 496
NlaIV GGNNCC 2 cut(s) 340, 776
NmuCI GTSAC 1 cut(s) 143
PctI GAATGC 1 cut(s) 539
PfeI GAWTC 2 cut(s) 20, 346
PflFI GACNNNGTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 6 cut(s) 6, 59, 286, 598, 614, 741
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PshBI ATTAAT 1 cut(s) 80
PsiI TTATAA 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 333, 423, 580
PspEI GGTNACC 2 cut(s) 274, 308
PspGI CCWGG 3 cut(s) 333, 423, 580
PspN4I GGNNCC 2 cut(s) 340, 776
PspPI GGNCC 1 cut(s) 331
PstI CTGCAG 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 3 cut(s) 26, 464, 564
RsaNI GTAC 3 cut(s) 25, 463, 563
RseI CAYNNNNRTG 2 cut(s) 165, 404
SacII CCGCGG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 80, 224
SatI GCNGC 6 cut(s) 5, 58, 285, 597, 613, 740
Sau3AI GATC 3 cut(s) 326, 468, 746
Sau96I GGNCC 1 cut(s) 331
SbfI CCTGCAGG 1 cut(s) 99
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 4 cut(s) 303, 335, 425, 582
SdaI CCTGCAGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 432
SfcI CTRYAG 1 cut(s) 95
Sfr303I CCGCGG 1 cut(s) 288
SgrBI CCGCGG 1 cut(s) 288
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 165, 404
Sse8387I CCTGCAGG 1 cut(s) 99
Sse9I AATT 3 cut(s) 11, 115, 710
SsiI CCGC 5 cut(s) 285, 287, 324, 570, 677
SspMI CTAG 3 cut(s) 35, 395, 411
StyD4I CCNGG 4 cut(s) 301, 333, 423, 580
StyI CCWWGG 2 cut(s) 196, 399
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 488
TaqI TCGA 1 cut(s) 749
TasI AATT 3 cut(s) 11, 115, 710
TatI WGTACW 2 cut(s) 462, 562
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 2 cut(s) 20, 346
Tru1I TTAA 2 cut(s) 80, 224
Tru9I TTAA 2 cut(s) 80, 224
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 5 cut(s) 4, 57, 596, 612, 739
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 192, 242
TspRI CASTG 1 cut(s) 217
Tth111I GACNNNGTC 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 331
VspI ATTAAT 1 cut(s) 80
XapI RAATTY 2 cut(s) 11, 115
XcmI CCANNNNNNNNNTGG 2 cut(s) 167, 698
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 3 cut(s) 35, 395, 411
ZrmI AGTACT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.