Rh7BG431000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000489
Physical Location & Seq
Reverse (-)
49321131 .. 49322022
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG431000.1

Sequence Viewer

Length: 789 bp
ATGGAAAGGACGCTAGCAACAGCATCTGACGCACTAGGAATGACTCCACTTCATTTCGCTGCAGATAAGGGTCGCGTTTCAATTGTGAAACAAATACTGGAATGTGATAAGTCCACTGCCTACATTGTCAACATTTACAAGTTGACACCCGTTCATTATGCAGCCTATGCAGGGCATGTAGATGTACTGAAACAGCTTATTTTCTATTGCCGGGACAGTTGCGAATTGGTGGACCAAGACGGTCGCAATGCCCTACATTTAGCAATTATCGGTAATGAAGAAAAAGTAGAAGAGTTTGTTCGGAAAGATCCATGGCTTAGTAGCGTCCTTTTAAATGGCAAAGATTCTGTCGGAAACACACCTCTCCATCAAATTGCTACTTCTGATCAAGAATACGATGGCTTGGAATTTATCCGTGATTCTAGAGTCGATAAGATGGCATTCAACAGAAAAAATAAGAACGCGCTAGACATCATTCTGCATAGCACTGATTCTGAGTGGAAGAGGAACCTCATACAAGGGTTGAGAAATTTTGGTGCAAGAGAGAGTCAACGAGTGTCAAGAGACAAAGGTGGTGACAGAGAGTCAAAATACAAGGAAATAAAAGAATCTCATATGGTAGTATCTGCACTCATAGCAACTGTAACCTTCGCAGCAGGTTTCACTATGCCTGGTGGTTACCAAAGTGAAAAAGGGCCAGATCAAGGTTTTGCAGTTCTATCAAGAAATGCAGCTTTCAAGGCGTTTGTGATAACAAATACGTACATTAGCCATGACTCTGTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

262

Amino Acids

29.28

Weight (kDa)

6.71

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 10 - 67 1.3e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 52 - 145 2.1e-10 Ankyrin repeats (3 copies)
PGG PF13962 196 - 254 3.8e-19 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 647
AccII CGCG 2 cut(s) 75, 464
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 2 cut(s) 407, 529
AfaI GTAC 2 cut(s) 186, 764
AfiI CCNNNNNNNGG 2 cut(s) 171, 704
AgsI TTSAA 3 cut(s) 81, 445, 739
AhdI GACNNNNNGTC 1 cut(s) 583
AjnI CCWGG 1 cut(s) 670
AluBI AGCT 2 cut(s) 196, 734
AluI AGCT 2 cut(s) 196, 734
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 1 cut(s) 695
ApeKI GCWGC 4 cut(s) 59, 161, 653, 731
ApoI RAATTY 2 cut(s) 407, 529
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 2 cut(s) 232, 695
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 587
AsuNHI GCTAGC 1 cut(s) 13
AvaII GGWCC 1 cut(s) 232
BbvI GCAGC 4 cut(s) 46, 173, 665, 743
BccI CCATC 3 cut(s) 375, 392, 430
BciT130I CCWGG 1 cut(s) 672
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 4 cut(s) 14, 35, 423, 467
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 4 cut(s) 60, 162, 654, 732
BlsI GCNGC 4 cut(s) 61, 163, 655, 733
Bme1390I CCNGG 2 cut(s) 212, 672
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 232, 695
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 2 cut(s) 212, 672
BmsI GCATC 1 cut(s) 32
BmtI GCTAGC 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 311
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 704
Bse1I ACTGG 2 cut(s) 102, 784
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 311
BseLI CCNNNNNNNGG 2 cut(s) 171, 704
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 102, 784
BseXI GCAGC 4 cut(s) 46, 173, 665, 743
BsgI GTGCAG 1 cut(s) 612
Bsh1236I CGCG 2 cut(s) 75, 464
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 697
BsiEI CGRYCG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 171, 704
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 1 cut(s) 697
Bsp143I GATC 3 cut(s) 307, 385, 700
Bsp19I CCATGG 1 cut(s) 311
BspANI GGCC 1 cut(s) 697
BspCNI CTCAG 1 cut(s) 487
BspFNI CGCG 2 cut(s) 75, 464
BspLI GGNNCC 1 cut(s) 509
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 647
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 2 cut(s) 102, 784
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 3 cut(s) 307, 385, 700
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 3 cut(s) 218, 242, 643
Bst6I CTCTTC 2 cut(s) 285, 497
BstAPI GCANNNNNTGC 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 317, 495
BstDSI CCRYGG 1 cut(s) 311
BstEII GGTNACC 1 cut(s) 677
BstFNI CGCG 2 cut(s) 75, 464
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 3 cut(s) 310, 388, 703
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 3 cut(s) 307, 385, 700
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 4 cut(s) 29, 167, 635, 740
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 1 cut(s) 179
BstPI GGTNACC 1 cut(s) 677
BstSCI CCNGG 2 cut(s) 210, 670
BstSFI CTRYAG 1 cut(s) 60
BstSNI TACGTA 1 cut(s) 762
BstUI CGCG 2 cut(s) 75, 464
BstV1I GCAGC 4 cut(s) 46, 173, 665, 743
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 1 cut(s) 697
BtgI CCRYGG 1 cut(s) 311
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 486
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 232, 695
CseI GACGC 3 cut(s) 19, 38, 313
Csp6I GTAC 2 cut(s) 185, 763
CviAII CATG 3 cut(s) 176, 312, 773
CviJI RGCY 7 cut(s) 164, 196, 316, 402, 697, 734, 771
CviKI_1 RGCY 7 cut(s) 164, 196, 316, 402, 697, 734, 771
CviQI GTAC 2 cut(s) 185, 763
DdeI CTNAG 2 cut(s) 317, 495
DpnI GATC 3 cut(s) 309, 387, 702
DpnII GATC 3 cut(s) 307, 385, 700
DraI TTTAAA 1 cut(s) 333
DriI GACNNNNNGTC 1 cut(s) 583
Eam1104I CTCTTC 2 cut(s) 285, 497
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 2 cut(s) 285, 497
Eco105I TACGTA 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 232
Eco91I GGTNACC 1 cut(s) 677
EcoO65I GGTNACC 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 3 cut(s) 179, 315, 776
FaqI GGGAC 1 cut(s) 227
FatI CATG 3 cut(s) 175, 311, 772
FauNDI CATATG 1 cut(s) 615
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 60, 162, 654, 732
Fsp4HI GCNGC 4 cut(s) 60, 162, 654, 732
FspBI CTAG 4 cut(s) 14, 35, 423, 467
GlaI GCGC 1 cut(s) 465
GluI GCNGC 4 cut(s) 60, 162, 654, 732
HaeIII GGCC 1 cut(s) 697
HapII CCGG 1 cut(s) 211
HgaI GACGC 3 cut(s) 19, 38, 313
HhaI GCGC 1 cut(s) 466
Hin1II CATG 3 cut(s) 179, 315, 776
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 3 cut(s) 130, 144, 551
HindII GTYRAC 3 cut(s) 130, 144, 551
HinfI GANTC 9 cut(s) 43, 344, 419, 426, 491, 547, 584, 608, 776
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 5 cut(s) 114, 130, 144, 232, 551
Hpy188I TCNGA 5 cut(s) 28, 303, 353, 385, 496
Hpy188III TCNNGA 4 cut(s) 389, 423, 561, 723
Hpy8I GTNNAC 5 cut(s) 114, 130, 144, 232, 551
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 3 cut(s) 218, 242, 643
HpyCH4IV ACGT 1 cut(s) 761
HpyCH4V TGCA 8 cut(s) 62, 161, 170, 481, 539, 629, 713, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 167, 635, 740
HpyF3I CTNAG 2 cut(s) 317, 495
HpySE526I ACGT 1 cut(s) 761
Hsp92II CATG 3 cut(s) 179, 315, 776
HspAI GCGC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 3 cut(s) 307, 385, 700
LpnPI CCDG 7 cut(s) 83, 156, 224, 642, 657, 684, 711
Lsp1109I GCAGC 4 cut(s) 46, 173, 665, 743
LweI GCATC 1 cut(s) 32
MaeI CTAG 4 cut(s) 14, 35, 423, 467
MaeII ACGT 1 cut(s) 761
MaeIII GTNAC 3 cut(s) 575, 643, 677
MalI GATC 3 cut(s) 309, 387, 702
MboI GATC 3 cut(s) 307, 385, 700
MboII GAAGA 3 cut(s) 290, 302, 514
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 307
MluCI AATT 6 cut(s) 81, 224, 264, 372, 407, 529
MlyI GAGTC 5 cut(s) 37, 435, 556, 593, 770
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 3 cut(s) 372, 498, 521
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 212, 672
MunI CAATTG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 2 cut(s) 75, 464
MwoI GCNNNNNNNGC 4 cut(s) 29, 167, 635, 740
NciI CCSGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 311
NdeI CATATG 1 cut(s) 615
NdeII GATC 3 cut(s) 307, 385, 700
NheI GCTAGC 1 cut(s) 13
NlaIII CATG 3 cut(s) 179, 315, 776
NlaIV GGNNCC 1 cut(s) 509
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 179
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 4 cut(s) 344, 419, 491, 608
PflFI GACNNNGTC 1 cut(s) 779
PkrI GCNGC 4 cut(s) 61, 163, 655, 733
PleI GAGTC 5 cut(s) 37, 434, 555, 592, 770
PpsI GAGTC 5 cut(s) 37, 434, 555, 592, 770
Ppu21I YACGTR 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 670
PspEI GGTNACC 1 cut(s) 677
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 2 cut(s) 232, 695
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 779
RsaI GTAC 2 cut(s) 186, 764
RsaNI GTAC 2 cut(s) 185, 763
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 4 cut(s) 60, 162, 654, 732
Sau3AI GATC 3 cut(s) 307, 385, 700
Sau96I GGNCC 2 cut(s) 232, 695
SchI GAGTC 5 cut(s) 37, 435, 556, 593, 770
ScrFI CCNGG 2 cut(s) 212, 672
SetI ASST 9 cut(s) 198, 364, 513, 574, 650, 661, 709, 736, 764
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 180
SnaBI TACGTA 1 cut(s) 762
Sse9I AATT 6 cut(s) 81, 224, 264, 372, 407, 529
SspMI CTAG 4 cut(s) 14, 35, 423, 467
StyD4I CCNGG 2 cut(s) 210, 670
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 3 cut(s) 218, 242, 643
TaiI ACGT 1 cut(s) 764
TaqI TCGA 1 cut(s) 429
TasI AATT 6 cut(s) 81, 224, 264, 372, 407, 529
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 4 cut(s) 344, 419, 491, 608
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 121, 493
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 4 cut(s) 59, 161, 653, 731
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 3 cut(s) 41, 143, 291
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 121, 493
Tth111I GACNNNGTC 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 2 cut(s) 407, 529
XbaI TCTAGA 1 cut(s) 422
XceI RCATGY 1 cut(s) 179
XspI CTAG 4 cut(s) 14, 35, 423, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.