Rh2CG117000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000489
Physical Location & Seq
Reverse (-)
10279146 .. 10295246
16101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG117000.1

Sequence Viewer

Length: 669 bp
ATGCTCAAAATGTCCCAGCGGCTACTATTACAGCCAAACGAGAGCGGTGATACTGCCTTACATTTGGCGGCAAGACATGGACATGCTGACATAGTTCTTATCAGGCTGCGAAAGACTGGCATGGCAACCTCGAGGAAGAAAGATATCAAACAAGGTTTGAGAAAATCTGGTGCAAGAGTAGGTCAACGAGTGTCAAGAGACAAAGATGATGACACGAAAGTCCATGTAAATAAAGGTGGCGAAGAGTCTAAATACAAGGAAATAAAAGAATCTCATTTGGTAGTGGCCACACTCATAGCAACTGTGACTTTCACAGCAGGTTTCACTATGCCTGGTGGTTACCATAGTGAAAAAGGGTCAGATCAAGGTCTTGCTGTTCTATCAAGAAATGCAGCTTTCAAGGCATTTTTGATAACTAATACATTAGCCCTGTATATGTCCAGTTGTGCCGTCATGATACGATTTTTCTTGTCGATGAAAAGGGAGCATCTTGTATCACAATTATTTAATGTGGCTCTAGACCTAGGTCTTACCTCTTATTCAATGATTGCTATGGGGGCTGCATTCCTTACTGGCACATATGCAGTATTAGGTCAGACTTTGGGAGTCAGCTTCGTTCAGCATCTTGCTGGTTTTCCTTCTTCACAAAACAATAACATTCAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

222

Amino Acids

24.2

Weight (kDa)

9.91

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 83 - 196 6.5e-29 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AbsI CCTCGAGG 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 45
AciI CCGC 3 cut(s) 19, 45, 68
AcoI YGGCCR 1 cut(s) 285
AgsI TTSAA 2 cut(s) 400, 543
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 395, 612
AluI AGCT 2 cut(s) 395, 612
Alw26I GTCTC 1 cut(s) 192
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 106, 392, 560
AspA2I CCTAGG 1 cut(s) 523
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 130
AvrII CCTAGG 1 cut(s) 523
BalI TGGCCA 1 cut(s) 287
BbvI GCAGC 3 cut(s) 93, 404, 547
BceAI ACGGC 1 cut(s) 434
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 2 cut(s) 518, 524
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 5 cut(s) 20, 69, 107, 393, 561
BlnI CCTAGG 1 cut(s) 523
BlsI GCNGC 5 cut(s) 21, 70, 108, 394, 562
Bme1390I CCNGG 1 cut(s) 333
BmeT110I CYCGRG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 496, 631
BoxI GACNNNNGTC 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 523
Bse1I ACTGG 3 cut(s) 121, 441, 577
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 523
BseNI ACTGG 3 cut(s) 121, 441, 577
BseXI GCAGC 3 cut(s) 93, 404, 547
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 130
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 3 cut(s) 19, 45, 68
BspANI GGCC 1 cut(s) 287
BspHI TCATGA 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 45
BsrI ACTGG 3 cut(s) 121, 441, 577
BssECI CCNNGG 1 cut(s) 523
BssMI GATC 1 cut(s) 361
BssT1I CCWWGG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 338
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 2 cut(s) 401, 557
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 86
BstPAI GACNNNNGTC 1 cut(s) 525
BstPI GGTNACC 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 93, 404, 547
BsuRI GGCC 1 cut(s) 287
BveI ACCTGC 1 cut(s) 308
CciI TCATGA 1 cut(s) 453
CviAII CATG 5 cut(s) 77, 83, 121, 224, 454
CviJI RGCY 9 cut(s) 22, 34, 106, 287, 395, 428, 515, 560, 612
CviKI_1 RGCY 9 cut(s) 22, 34, 106, 287, 395, 428, 515, 560, 612
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 523
Eco32I GATATC 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 331
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 5 cut(s) 80, 86, 124, 227, 457
FatI CATG 5 cut(s) 76, 82, 120, 223, 453
FauNDI CATATG 1 cut(s) 580
Fnu4HI GCNGC 5 cut(s) 20, 69, 107, 393, 561
Fsp4HI GCNGC 5 cut(s) 20, 69, 107, 393, 561
FspBI CTAG 2 cut(s) 518, 524
GluI GCNGC 5 cut(s) 20, 69, 107, 393, 561
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 287
Hin1II CATG 5 cut(s) 80, 86, 124, 227, 457
HincII GTYRAC 1 cut(s) 185
HindII GTYRAC 1 cut(s) 185
HinfI GANTC 3 cut(s) 245, 269, 606
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 361, 597, 663
Hpy188III TCNNGA 4 cut(s) 195, 384, 454, 518
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 648
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 4 cut(s) 173, 392, 563, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 557
Hsp92II CATG 5 cut(s) 80, 86, 124, 227, 457
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 3 cut(s) 93, 404, 547
LweI GCATC 2 cut(s) 496, 631
MaeI CTAG 2 cut(s) 518, 524
MaeIII GTNAC 2 cut(s) 304, 338
MalI GATC 1 cut(s) 363
MbiI CCGCTC 1 cut(s) 45
MboI GATC 1 cut(s) 361
MboII GAAGA 3 cut(s) 148, 254, 633
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 1 cut(s) 500
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 2 cut(s) 254, 615
MnlI CCTC 3 cut(s) 126, 139, 544
Mox20I TGGCCA 1 cut(s) 287
MscI TGGCCA 1 cut(s) 287
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 401, 557
NdeI CATATG 1 cut(s) 580
NdeII GATC 1 cut(s) 361
NlaIII CATG 5 cut(s) 80, 86, 124, 227, 457
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 130
PagI TCATGA 1 cut(s) 453
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 5 cut(s) 21, 70, 108, 394, 562
PleI GAGTC 2 cut(s) 253, 614
PpsI GAGTC 2 cut(s) 253, 614
PshAI GACNNNNGTC 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 331
PspEI GGTNACC 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 331
PspXI VCTCGAGB 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 5 cut(s) 20, 69, 107, 393, 561
Sau3AI GATC 1 cut(s) 361
SchI GAGTC 2 cut(s) 254, 615
ScrFI CCNGG 1 cut(s) 333
SfaNI GCATC 2 cut(s) 496, 631
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 1 cut(s) 500
SsiI CCGC 3 cut(s) 19, 45, 68
SspMI CTAG 2 cut(s) 518, 524
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 131, 473
TasI AATT 1 cut(s) 500
TauI GCSGC 2 cut(s) 22, 71
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 106, 392, 560
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 491
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 130
XmaJI CCTAGG 1 cut(s) 523
XspI CTAG 2 cut(s) 518, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.