pycom08g18260

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
18528718 .. 18530446
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18260.1

Sequence Viewer

Length: 1134 bp
ATGGATCTTGATATCTACAATGCTGCAGCAAAAGGGAAGATTGAAATATTTAAGGAAAGATTTGTTCACTATCAACTTAACAGCCTAGTAACCCCGCGAAATAACACAATCCTCCACATCAACATTACAGCCCAAACCAGAGAAAAAGAAAAGGATGAATCAACCCAATTTATCCAACAGATTCTGGATTTATGCCCATCGCTGCTCCTTCAGGCCAACACCAAAGGGGAGACTTTACTTCACATTGCAGCAAGGCACGGACTTGTTGCCACAGTGAAAGCCCTCCTTCAGTGTGCAAAAAATTCTCATCATGATTGCAATAACCACGAGATTGAAAGCGGACTAGATATAGCCACGCAGATGGTCAGGACAATCACTACTTCTAAGGACACGGCTTTGCATGAGGCAGTTCGACATCATCACACTGGTGTGGTTCAAATATTGATTAGAGAGGACCCGGATTTTCCATATTCTGCTAATGAAGCCGGCGAAACTCCACTCTACCTCGCAGCTGAGAGAGGTTATCATGACGTGGTCTCTAAAATATTAGAAACATGCATGTCAATTGCCCATGGTGGCCCCAACGGTAGAACATCTCTACACGCTGCAGCAATTTTCAACGATGAAGGTCGTCCAAGACTAACTTTGTTTGTTTTTGTTTCAGTTATAACAAAAAAAATACTGGACACAAATTGGTTTTTGACCAGCGAAGCAGACCATAAAGGATGGACTCCGCTTCACTATGCCGCATATTTTGGTCATCTTTCAGTTCTGAAGCAGCTATTATATTATGACCAGTCTCAGTCTGCGGTCTACATTGGCGACAAGGATGAGAAAAAGACCGCTATTCACATTGCAGCCAGCCAAGGCCATGTTCATGTTATGAATGAGCTCCTTTCATACTGCCCCGATTGTTGCGAGCTGGTTGATCACAAAGGCCGGAATGTTGTTCACTTCGCCATGGAGAGCATCAATAGTGAACAAGTTGTCAAATTTATCATTGAGAACTCGTCACTTTGCAGCCTTATAAATGAAACTGATTCCGGTACAATGGCATCAAAAATAAAGAACCTAAGAACTCCTGACATCTTTTTGGCTAACGGTAAATTTTCAGGATTGAAGGTAACCCCATAG
Functional Annotation

Protein Analysis

378

Amino Acids

42.06

Weight (kDa)

6.33

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 65 - 152 1.1e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 124 - 184 8e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 133 - 207 2.4e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 195 - 265 1.3e-06 Ankyrin repeats (3 copies)
Ank PF00023 242 - 263 4.4e-06 Ankyrin repeat
Ank_2 PF12796 276 - 336 7.3e-08 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 668, 1028
AccI GTMKAC 1 cut(s) 813
AccII CGCG 1 cut(s) 97
AciI CCGC 6 cut(s) 95, 339, 734, 747, 809, 843
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 301, 992, 1106
AcuI CTGAAG 3 cut(s) 194, 272, 794
AfaI GTAC 1 cut(s) 1048
AgsI TTSAA 5 cut(s) 44, 335, 437, 619, 1120
AjiI CACGTC 1 cut(s) 532
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AleI CACNNNNGTG 2 cut(s) 426, 428
AluBI AGCT 4 cut(s) 512, 781, 892, 922
AluI AGCT 4 cut(s) 512, 781, 892, 922
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 3 cut(s) 224, 541, 804
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 184
AoxI GGCC 4 cut(s) 213, 577, 868, 937
ApoI RAATTY 3 cut(s) 301, 992, 1106
AspS9I GGNCC 2 cut(s) 454, 578
AsuC2I CCSGG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 894
BauI CACGAG 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 894
BccI CCATC 3 cut(s) 205, 355, 720
BceAI ACGGC 1 cut(s) 408
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 1 cut(s) 458
BcoDI GTCTC 3 cut(s) 224, 541, 804
BfaI CTAG 2 cut(s) 86, 344
BfmI CTRYAG 2 cut(s) 24, 606
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 1 cut(s) 454
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 2 cut(s) 454, 578
BmiI GGNNCC 2 cut(s) 456, 580
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 978, 1064
BpuMI CCSGG 1 cut(s) 458
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 3 cut(s) 571, 865, 960
BsaWI WCCGGW 1 cut(s) 1043
Bse118I RCCGGY 1 cut(s) 485
Bse1I ACTGG 3 cut(s) 430, 687, 796
Bse3DI GCAATG 2 cut(s) 243, 852
BseDI CCNNGG 3 cut(s) 571, 865, 960
BseGI GGATG 3 cut(s) 160, 731, 835
BseMI GCAATG 2 cut(s) 243, 852
BseMII CTCAG 2 cut(s) 504, 815
BseNI ACTGG 3 cut(s) 430, 687, 796
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 4 cut(s) 215, 579, 870, 939
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 4 cut(s) 458, 486, 940, 1044
BsmAI GTCTC 3 cut(s) 224, 541, 804
BsnI GGCC 4 cut(s) 215, 579, 870, 939
Bso31I GGTCTC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 894
Bsp143I GATC 2 cut(s) 4, 928
Bsp19I CCATGG 2 cut(s) 571, 960
BspACI CCGC 6 cut(s) 95, 339, 734, 747, 809, 843
BspANI GGCC 4 cut(s) 215, 579, 870, 939
BspCNI CTCAG 2 cut(s) 505, 814
BspFNI CGCG 1 cut(s) 97
BspHI TCATGA 2 cut(s) 310, 526
BspLI GGNNCC 2 cut(s) 456, 580
BspMAI CTGCAG 2 cut(s) 28, 610
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 243, 852
BsrFI RCCGGY 1 cut(s) 485
BsrI ACTGG 3 cut(s) 430, 687, 796
BssAI RCCGGY 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 571, 865, 960
BssMI GATC 2 cut(s) 4, 928
BssSI CACGAG 1 cut(s) 326
BssT1I CCWWGG 3 cut(s) 571, 865, 960
Bst2BI CACGAG 1 cut(s) 326
Bst4CI ACNGT 3 cut(s) 274, 587, 1103
BstC8I GCNNGC 3 cut(s) 487, 862, 920
BstDEI CTNAG 4 cut(s) 384, 513, 801, 1073
BstDSI CCRYGG 2 cut(s) 571, 960
BstEII GGTNACC 1 cut(s) 1123
BstF5I GGATG 3 cut(s) 160, 731, 835
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 7, 931
BstMAI GTCTC 3 cut(s) 224, 541, 804
BstMBI GATC 2 cut(s) 4, 928
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNSI RCATGY 2 cut(s) 558, 562
BstPI GGTNACC 1 cut(s) 1123
BstSCI CCNGG 1 cut(s) 456
BstSFI CTRYAG 2 cut(s) 24, 606
BstUI CGCG 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 4 cut(s) 215, 579, 870, 939
BtgI CCRYGG 2 cut(s) 571, 960
BtgZI GCGATG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 3 cut(s) 160, 731, 835
BtsIMutI CAGTG 3 cut(s) 279, 296, 423
Cac8I GCNNGC 3 cut(s) 487, 862, 920
CaiI CAGNNNCTG 1 cut(s) 184
CciI TCATGA 2 cut(s) 310, 526
Cfr10I RCCGGY 1 cut(s) 485
Cfr13I GGNCC 2 cut(s) 454, 578
Csp6I GTAC 1 cut(s) 1047
CviAII CATG 9 cut(s) 311, 401, 527, 555, 559, 572, 872, 878, 961
CviQI GTAC 1 cut(s) 1047
DdeI CTNAG 4 cut(s) 384, 513, 801, 1073
DpnI GATC 2 cut(s) 6, 930
DpnII GATC 2 cut(s) 4, 928
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 3 cut(s) 571, 865, 960
Eco24I GRGCYC 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 541
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 3 cut(s) 194, 272, 794
Eco91I GGTNACC 1 cut(s) 1123
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 1 cut(s) 454
EcoO65I GGTNACC 1 cut(s) 1123
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 3 cut(s) 571, 865, 960
EcoT22I ATGCAT 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 3 cut(s) 571, 865, 960
FaeI CATG 9 cut(s) 314, 404, 530, 558, 562, 575, 875, 881, 964
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 628, 660
FatI CATG 9 cut(s) 310, 400, 526, 554, 558, 571, 871, 877, 960
FauI CCCGC 1 cut(s) 102
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 813
FokI GGATG 3 cut(s) 167, 738, 842
FriOI GRGCYC 1 cut(s) 894
FspBI CTAG 2 cut(s) 86, 344
HaeIII GGCC 4 cut(s) 215, 579, 870, 939
HapII CCGG 4 cut(s) 458, 486, 940, 1044
Hin1II CATG 9 cut(s) 314, 404, 530, 558, 562, 575, 875, 881, 964
HinfI GANTC 4 cut(s) 158, 181, 730, 1040
HpaII CCGG 4 cut(s) 458, 486, 940, 1044
Hpy166II GTNNAC 4 cut(s) 67, 814, 952, 980
Hpy188I TCNGA 1 cut(s) 774
Hpy188III TCNNGA 7 cut(s) 8, 185, 311, 367, 527, 1082, 1113
Hpy8I GTNNAC 4 cut(s) 67, 814, 952, 980
HpyAV CCTTC 4 cut(s) 218, 296, 620, 1114
HpyCH4III ACNGT 3 cut(s) 274, 587, 1103
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 9 cut(s) 26, 248, 296, 318, 400, 558, 608, 857, 1020
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 4 cut(s) 384, 513, 801, 1073
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 9 cut(s) 314, 404, 530, 558, 562, 575, 875, 881, 964
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 2 cut(s) 4, 928
LmnI GCTCC 2 cut(s) 210, 897
LweI GCATC 2 cut(s) 978, 1064
MaeI CTAG 2 cut(s) 86, 344
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 88, 1011, 1123
MalI GATC 2 cut(s) 6, 930
MboI GATC 2 cut(s) 4, 928
MboII GAAGA 1 cut(s) 49
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 894
MluCI AATT 7 cut(s) 167, 301, 564, 612, 691, 992, 1106
MlyI GAGTC 1 cut(s) 724
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 6 cut(s) 122, 293, 397, 445, 512, 515
Mph1103I ATGCAT 1 cut(s) 560
MroNI GCCGGC 1 cut(s) 485
MseI TTAA 2 cut(s) 51, 78
MslI CAYNNNNRTG 4 cut(s) 359, 426, 428, 876
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 4 cut(s) 458, 486, 940, 1044
MspR9I CCNGG 1 cut(s) 458
MunI CAATTG 1 cut(s) 564
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 482
NaeI GCCGGC 1 cut(s) 487
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 2 cut(s) 571, 960
NdeII GATC 2 cut(s) 4, 928
NgoMIV GCCGGC 1 cut(s) 485
NlaIII CATG 9 cut(s) 314, 404, 530, 558, 562, 575, 875, 881, 964
NlaIV GGNNCC 2 cut(s) 456, 580
NmuCI GTSAC 1 cut(s) 1011
NsiI ATGCAT 1 cut(s) 560
NspI RCATGY 2 cut(s) 558, 562
OliI CACNNNNGTG 2 cut(s) 426, 428
PagI TCATGA 2 cut(s) 310, 526
PdiI GCCGGC 1 cut(s) 487
PfeI GAWTC 3 cut(s) 158, 181, 1040
PflFI GACNNNGTC 1 cut(s) 533
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PpuMI RGGWCCY 1 cut(s) 454
PsiI TTATAA 2 cut(s) 668, 1028
Psp124BI GAGCTC 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 454
PspEI GGTNACC 1 cut(s) 1123
PspN4I GGNNCC 2 cut(s) 456, 580
PspPI GGNCC 2 cut(s) 454, 578
PspPPI RGGWCCY 1 cut(s) 454
PstI CTGCAG 2 cut(s) 28, 610
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 1048
RsaNI GTAC 1 cut(s) 1047
RseI CAYNNNNRTG 4 cut(s) 359, 426, 428, 876
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 2 cut(s) 51, 78
Sau3AI GATC 2 cut(s) 4, 928
Sau96I GGNCC 2 cut(s) 454, 578
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 2 cut(s) 978, 1064
SfcI CTRYAG 2 cut(s) 24, 606
SinI GGWCC 1 cut(s) 454
SmiMI CAYNNNNRTG 4 cut(s) 359, 426, 428, 876
Sse9I AATT 7 cut(s) 167, 301, 564, 612, 691, 992, 1106
SsiI CCGC 6 cut(s) 95, 339, 734, 747, 809, 843
SspI AATATT 3 cut(s) 48, 441, 546
SspMI CTAG 2 cut(s) 86, 344
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 3 cut(s) 571, 865, 960
TaaI ACNGT 3 cut(s) 274, 587, 1103
TaiI ACGT 1 cut(s) 534
TaqI TCGA 1 cut(s) 412
TasI AATT 7 cut(s) 167, 301, 564, 612, 691, 992, 1106
TauI GCSGC 1 cut(s) 749
TfiI GAWTC 3 cut(s) 158, 181, 1040
Tru1I TTAA 2 cut(s) 51, 78
Tru9I TTAA 2 cut(s) 51, 78
TscAI CASTG 3 cut(s) 279, 296, 430
TseFI GTSAC 1 cut(s) 1011
Tsp45I GTSAC 1 cut(s) 1011
TspDTI ATGAA 7 cut(s) 171, 495, 639, 866, 888, 899, 1047
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 3 cut(s) 279, 296, 430
Tth111I GACNNNGTC 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 3 cut(s) 301, 992, 1106
XceI RCATGY 2 cut(s) 558, 562
XmiI GTMKAC 1 cut(s) 813
XspI CTAG 2 cut(s) 86, 344
Zsp2I ATGCAT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.