Rmu_ssc0000262.1_g000026

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000262.1
OG0000489
Physical Location & Seq
Reverse (-)
111813 .. 112331
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000262.1_g000026.1.cds

Sequence Viewer

Length: 519 bp
atgactctagcgacagcagcagacggagaaggatatactccacttcatatagctgcatgtagtggtcacgtttcaattgtgaaacaaatacttgaatgtgacaagtccactgcctacattggcgacattatttacaagttgacacccgttcactgtgcagcctatgcagggcatgtagatgtactgaaactgcttattttctactgccctgacagtttcgaattggtggccactgaaggtctcaatgccctacattttgcaattattggtaatcaatataaagtagaagagtttgttcgaaaagatccatggcttagtagcgtccttttaaatagcaaaaattctgtcgggaacacacctctccatcaaatagctacttctgaaaaatacgaaggcttgaaatttatcagtgattcgagagttgataagatggcattcaacacaaaaaataagaacgcgctaaacatcattctaaagagcacggattctcagtggaaggtatatattaatggcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

172

Amino Acids

19.02

Weight (kDa)

6.58

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 458
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 340, 401
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 4 cut(s) 75, 95, 400, 439
AluBI AGCT 2 cut(s) 53, 374
AluI AGCT 2 cut(s) 53, 374
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 299
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 17, 53, 158
ApoI RAATTY 2 cut(s) 340, 401
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
AseI ATTAAT 1 cut(s) 507
AspLEI GCGC 1 cut(s) 460
AsuII TTCGAA 2 cut(s) 219, 298
BalI TGGCCA 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 29, 40, 170
BccI CCATC 2 cut(s) 372, 424
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 8
BisI GCNGC 3 cut(s) 18, 54, 159
BlsI GCNGC 3 cut(s) 19, 55, 160
Bpu14I TTCGAA 2 cut(s) 219, 298
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 503
BseXI GCAGC 3 cut(s) 29, 40, 170
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 434
BsnI GGCC 1 cut(s) 230
Bso31I GGTCTC 1 cut(s) 245
Bsp119I TTCGAA 2 cut(s) 219, 298
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 308
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 502
BspFNI CGCG 1 cut(s) 458
BspPI GGATC 1 cut(s) 299
BspT104I TTCGAA 2 cut(s) 219, 298
BspTNI GGTCTC 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 155, 215
Bst6I CTCTTC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 164
BstBI TTCGAA 2 cut(s) 219, 298
BstDEI CTNAG 2 cut(s) 314, 489
BstDSI CCRYGG 1 cut(s) 308
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 17, 164
BstNSI RCATGY 2 cut(s) 60, 176
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 3 cut(s) 29, 40, 170
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 5 cut(s) 108, 151, 231, 415, 497
CfoI GCGC 1 cut(s) 460
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 182
CviAII CATG 3 cut(s) 57, 173, 309
CviJI RGCY 7 cut(s) 53, 161, 230, 313, 374, 396, 513
CviKI_1 RGCY 7 cut(s) 53, 161, 230, 313, 374, 396, 513
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 314, 489
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
DraI TTTAAA 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 3 cut(s) 60, 176, 312
FatI CATG 3 cut(s) 56, 172, 308
Fnu4HI GCNGC 3 cut(s) 18, 54, 159
Fsp4HI GCNGC 3 cut(s) 18, 54, 159
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 459
GluI GCNGC 3 cut(s) 18, 54, 159
HaeIII GGCC 1 cut(s) 230
HgaI GACGC 1 cut(s) 310
HhaI GCGC 1 cut(s) 460
Hin1II CATG 3 cut(s) 60, 176, 312
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 3 cut(s) 4, 413, 485
Hpy166II GTNNAC 3 cut(s) 108, 141, 151
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 2 cut(s) 349, 417
Hpy8I GTNNAC 3 cut(s) 108, 141, 151
HpyAV CCTTC 4 cut(s) 23, 230, 386, 490
HpyCH4III ACNGT 2 cut(s) 155, 215
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 4 cut(s) 56, 158, 167, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 164
HpyF3I CTNAG 2 cut(s) 314, 489
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 3 cut(s) 60, 176, 312
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 1 cut(s) 304
LpnPI CCDG 2 cut(s) 153, 222
Lsp1109I GCAGC 3 cut(s) 29, 40, 170
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 65, 98
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 299
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 482
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 5 cut(s) 75, 221, 261, 340, 401
MluNI TGGCCA 1 cut(s) 230
MnlI CCTC 1 cut(s) 369
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MseI TTAA 3 cut(s) 329, 507, 517
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 230
MunI CAATTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 434
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 17, 164
NcoI CCATGG 1 cut(s) 308
NdeII GATC 1 cut(s) 304
NlaIII CATG 3 cut(s) 60, 176, 312
NmuCI GTSAC 2 cut(s) 65, 98
NspI RCATGY 2 cut(s) 60, 176
NspV TTCGAA 2 cut(s) 219, 298
PctI GAATGC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 413, 485
PkrI GCNGC 3 cut(s) 19, 55, 160
PshBI ATTAAT 1 cut(s) 507
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 3 cut(s) 329, 507, 517
SatI GCNGC 3 cut(s) 18, 54, 159
Sau3AI GATC 1 cut(s) 304
SduI GDGCHC 1 cut(s) 482
SetI ASST 6 cut(s) 55, 72, 241, 361, 376, 501
SfuI TTCGAA 2 cut(s) 219, 298
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 5 cut(s) 75, 221, 261, 340, 401
SspMI CTAG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 155, 215
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 219, 298, 416
TasI AATT 5 cut(s) 75, 221, 261, 340, 401
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 2 cut(s) 413, 485
Tru1I TTAA 3 cut(s) 329, 507, 517
Tru9I TTAA 3 cut(s) 329, 507, 517
TscAI CASTG 5 cut(s) 115, 158, 238, 415, 497
TseFI GTSAC 2 cut(s) 65, 98
TseI GCWGC 3 cut(s) 17, 53, 158
Tsp45I GTSAC 2 cut(s) 65, 98
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 2 cut(s) 39, 497
TspRI CASTG 5 cut(s) 115, 158, 238, 415, 497
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 2 cut(s) 340, 401
XceI RCATGY 2 cut(s) 60, 176
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.