Rh7DG323700

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000489
Physical Location & Seq
Forward (+)
38916200 .. 38916778
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG323700.1

Sequence Viewer

Length: 579 bp
ATGTTGCAGAGGAAGCTTTTTATCGACCGACTGAGAATGACTGGTGCAAGACGAGGTCATAGAAATTTAAGCTACAACGATAGCGTGATAGACTTCAAGGGAAACAATTGGGATGGAGACTCGATAGCGAAGGAAATTAAAGAATCCCATTTGTTGGTATCCACACTCATAGCAACTGTAACATTTGCAGCAGGTTTCACCGTGCCTGGTGGTTACCAAAGTGAAAAAGGACCAGATCAGGGTTTTGCGATTCTATCAAGAAATGCTGCTTTCCAAGCATTTATGATCACAAATACATTAGCCATGAGTATGTCTAGTTGTGCTGTCATGATACGCTTTTTTATGCAATTGAGGAGGCGGGAACTTACCTTCAGATATGGACCATATAGGGCGGCGTTAACTATCACCGCGTACACCTTGATTGCAATGGTGATTGCATTCCTTACCGGCACATACGCAGTATTAGGTGGCCATTCCTCCTTTGGACTTGCAATTGCGGCTTGTGTGGTTGGCTGCTTTTTCTTAGGAGTGGTTTTTCTTGTTTATTGCTTGGGCGACTTTCTGGAAGGGTGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

192

Amino Acids

21.22

Weight (kDa)

9.35

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 44 - 154 5.9e-29 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 154
AccII CGCG 1 cut(s) 410
AciI CCGC 4 cut(s) 358, 392, 408, 497
AcoI YGGCCR 1 cut(s) 469
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 355
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 154, 239
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 16, 72
AluI AGCT 2 cut(s) 16, 72
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 3 cut(s) 188, 266, 513
ApoI RAATTY 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 230, 380
AsuHPI GGTGA 3 cut(s) 190, 397, 442
AvaII GGWCC 2 cut(s) 230, 380
BalI TGGCCA 1 cut(s) 471
BbvI GCAGC 3 cut(s) 200, 253, 500
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 169
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 5 cut(s) 189, 267, 393, 498, 514
BlsI GCNGC 5 cut(s) 190, 268, 394, 499, 515
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 2 cut(s) 230, 380
BmgT120I GGNCC 2 cut(s) 230, 380
BmrFI CCNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 239
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 154, 239
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 3 cut(s) 200, 253, 500
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 154, 239
BsmAI GTCTC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 1 cut(s) 471
Bsp143I GATC 2 cut(s) 235, 285
BspACI CCGC 4 cut(s) 358, 392, 408, 497
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 1 cut(s) 24
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 432
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 446
BssMI GATC 2 cut(s) 235, 285
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 178, 202
BstDEI CTNAG 2 cut(s) 32, 523
BstEII GGTNACC 1 cut(s) 212
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 2 cut(s) 238, 288
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 235, 285
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 13, 275, 497
BstNI CCWGG 1 cut(s) 207
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 200, 253, 500
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 471
BtsCI GGATG 1 cut(s) 118
BveI ACCTGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 230, 380
Csp6I GTAC 1 cut(s) 412
CviAII CATG 2 cut(s) 304, 328
CviJI RGCY 6 cut(s) 16, 72, 302, 471, 500, 513
CviKI_1 RGCY 6 cut(s) 16, 72, 302, 471, 500, 513
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 32, 523
DpnI GATC 2 cut(s) 237, 287
DpnII GATC 2 cut(s) 235, 285
EaeI YGGCCR 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 230, 380
Eco57I CTGAAG 1 cut(s) 355
Eco91I GGTNACC 1 cut(s) 212
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 307, 331
FatI CATG 2 cut(s) 303, 327
FauI CCCGC 1 cut(s) 351
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 5 cut(s) 189, 267, 393, 498, 514
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 5 cut(s) 189, 267, 393, 498, 514
FspBI CTAG 1 cut(s) 315
GluI GCNGC 5 cut(s) 189, 267, 393, 498, 514
HaeIII GGCC 1 cut(s) 471
HapII CCGG 1 cut(s) 447
Hin1II CATG 2 cut(s) 307, 331
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 119, 143, 250
HpaI GTTAAC 1 cut(s) 399
HpaII CCGG 1 cut(s) 447
HphI GGTGA 3 cut(s) 190, 397, 442
Hpy166II GTNNAC 2 cut(s) 399, 414
Hpy188I TCNGA 2 cut(s) 374, 578
Hpy188III TCNNGA 3 cut(s) 258, 328, 563
Hpy8I GTNNAC 2 cut(s) 399, 414
HpyAV CCTTC 3 cut(s) 124, 379, 560
HpyCH4III ACNGT 2 cut(s) 178, 202
HpyCH4V TGCA 7 cut(s) 7, 47, 188, 346, 425, 437, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 275, 497
HpyF3I CTNAG 2 cut(s) 32, 523
Hsp92II CATG 2 cut(s) 307, 331
Ksp22I TGATCA 1 cut(s) 285
KspAI GTTAAC 1 cut(s) 399
Kzo9I GATC 2 cut(s) 235, 285
LpnPI CCDG 8 cut(s) 27, 177, 192, 219, 224, 246, 460, 548
Lsp1109I GCAGC 3 cut(s) 200, 253, 500
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 178, 212
MalI GATC 2 cut(s) 237, 287
MboI GATC 2 cut(s) 235, 285
MfeI CAATTG 3 cut(s) 106, 347, 492
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 5 cut(s) 64, 106, 135, 347, 492
MluNI TGGCCA 1 cut(s) 471
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 5 cut(s) 3, 47, 345, 348, 487
Mox20I TGGCCA 1 cut(s) 471
MscI TGGCCA 1 cut(s) 471
MseI TTAA 3 cut(s) 68, 138, 398
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 471
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 3 cut(s) 106, 347, 492
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 13, 275, 497
NdeII GATC 2 cut(s) 235, 285
NlaIII CATG 2 cut(s) 307, 331
PagI TCATGA 1 cut(s) 327
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 143, 250
PflFI GACNNNGTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 5 cut(s) 190, 268, 394, 499, 515
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 2 cut(s) 230, 380
PsyI GACNNNGTC 1 cut(s) 54
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 68, 138, 398
SatI GCNGC 5 cut(s) 189, 267, 393, 498, 514
Sau3AI GATC 2 cut(s) 235, 285
Sau96I GGNCC 2 cut(s) 230, 380
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 207
SetI ASST 7 cut(s) 18, 58, 74, 196, 371, 419, 469
SinI GGWCC 2 cut(s) 230, 380
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 5 cut(s) 64, 106, 135, 347, 492
SsiI CCGC 4 cut(s) 358, 392, 408, 497
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 2 cut(s) 178, 202
TaqI TCGA 2 cut(s) 24, 122
TaqII GACCGA 1 cut(s) 42
TasI AATT 5 cut(s) 64, 106, 135, 347, 492
TauI GCSGC 2 cut(s) 395, 500
TfiI GAWTC 2 cut(s) 143, 250
Tru1I TTAA 3 cut(s) 68, 138, 398
Tru9I TTAA 3 cut(s) 68, 138, 398
TseI GCWGC 3 cut(s) 188, 266, 513
Tth111I GACNNNGTC 1 cut(s) 54
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 2 cut(s) 230, 380
XapI RAATTY 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.