MD15G1232000.v1.1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000489
Physical Location & Seq
Reverse (-)
18948003 .. 18948650
648 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1232000.v1.1.491

Sequence Viewer

Length: 606 bp
ATGGATTCCTCCAATTCGACTGGTCAGATTGAGAGTGCTGCTCCATTACCATTAGCATCCCCGGGTGTCGATTGCCAGGCTACTCAGCAAGCAGATCAGACCAAGGAGGAACCTACAGAGGGCATAGATCTTGATGTTTTCAACGCTGCGAAACAAGGCAACGTCGATGCCCTAAGGGAACACGGGGAGCATCTTGACATAAAGCTCACTGCAACAAAAAACACAGTGCTCCATATTTACATAGCGTGCTCAAGCAGCCCAACGTTCAACGAATCTGAGAAACAAGTAATCGAGTCAACCAACATCGTTGAGGATATCCTTAAAACTTGTCCAGCACTGCTGTTGCAGCAGAATGAGAGTGGTGAGACTGCGTTACACATTGCCGCGAGACATGGGCGTGCTGGAATAGTTGGAGCTCTAATCCGAGCTGCAAAAGCTCGTCATGACGACCTCGAGAAAGGGGTTTTATCGGAAGAAGCATGGAAGATGCTCATAAGGGCAACCAACAACGGCAAGGACACGGCCTTGCACGAGGCGGTTCGATTTAATCACTTTGCAGTGGTGGAGATATTGACAAGGGAAGATCCAGAGTCTGTACACGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

202

Amino Acids

21.74

Weight (kDa)

5.05

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 101 - 192 2.9e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 386
AciI CCGC 2 cut(s) 384, 536
AclI AACGTT 1 cut(s) 263
AclWI GGATC 1 cut(s) 578
AfaI GTAC 1 cut(s) 597
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 142, 268
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 4 cut(s) 205, 416, 428, 437
AluI AGCT 4 cut(s) 205, 416, 428, 437
Alw21I GWGCWC 3 cut(s) 231, 251, 418
Alw26I GTCTC 2 cut(s) 359, 382
AlwI GGATC 1 cut(s) 578
AlwNI CAGNNNCTG 1 cut(s) 593
Ama87I CYCGRG 2 cut(s) 61, 452
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 5 cut(s) 38, 146, 255, 346, 428
AsuC2I CCSGG 2 cut(s) 62, 63
AsuHPI GGTGA 1 cut(s) 374
AvaI CYCGRG 2 cut(s) 61, 452
AxyI CCTNAGG 1 cut(s) 173
BanII GRGCYC 1 cut(s) 418
BauI CACGAG 1 cut(s) 530
Bbv12I GWGCWC 3 cut(s) 231, 251, 418
BbvI GCAGC 5 cut(s) 25, 133, 267, 358, 415
BceAI ACGGC 2 cut(s) 526, 537
BciT130I CCWGG 1 cut(s) 77
BcnI CCSGG 2 cut(s) 62, 63
BcoDI GTCTC 2 cut(s) 359, 382
BfmI CTRYAG 1 cut(s) 114
BglII AGATCT 1 cut(s) 127
BisI GCNGC 6 cut(s) 39, 147, 256, 347, 384, 429
BlsI GCNGC 6 cut(s) 40, 148, 257, 348, 385, 430
Bme1390I CCNGG 3 cut(s) 62, 63, 77
BmeT110I CYCGRG 2 cut(s) 61, 452
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 3 cut(s) 62, 63, 77
BmsI GCATC 4 cut(s) 65, 157, 199, 477
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 2 cut(s) 62, 63
BsaJI CCNNGG 3 cut(s) 60, 61, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 3 cut(s) 60, 61, 102
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 98, 267
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 5 cut(s) 25, 133, 267, 358, 415
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 1 cut(s) 524
BsiHKAI GWGCWC 3 cut(s) 231, 251, 418
BsiHKCI CYCGRG 2 cut(s) 61, 452
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 359, 382
BsnI GGCC 1 cut(s) 524
BsoBI CYCGRG 2 cut(s) 61, 452
Bsp1286I GDGCHC 3 cut(s) 231, 251, 418
Bsp1407I TGTACA 1 cut(s) 595
Bsp143I GATC 3 cut(s) 94, 127, 583
BspACI CCGC 2 cut(s) 384, 536
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 2 cut(s) 97, 268
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 595
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 3 cut(s) 60, 61, 102
BssMI GATC 3 cut(s) 94, 127, 583
BssSI CACGAG 1 cut(s) 530
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 595
BstC8I GCNNGC 3 cut(s) 90, 247, 399
BstDEI CTNAG 3 cut(s) 84, 173, 276
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 386
BstKTI GATC 3 cut(s) 97, 130, 586
BstMAI GTCTC 2 cut(s) 359, 382
BstMBI GATC 3 cut(s) 94, 127, 583
BstMWI GCNNNNNNNGC 3 cut(s) 255, 346, 434
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 3 cut(s) 60, 61, 75
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 5 cut(s) 25, 133, 267, 358, 415
BstX2I RGATCY 2 cut(s) 127, 583
BstYI RGATCY 2 cut(s) 127, 583
Bsu36I CCTNAGG 1 cut(s) 173
BsuRI GGCC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 3 cut(s) 207, 335, 564
BtsIMutI CAGTG 4 cut(s) 207, 231, 335, 564
Cac8I GCNNGC 3 cut(s) 90, 247, 399
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 1 cut(s) 442
Cfr9I CCCGGG 1 cut(s) 61
Csp6I GTAC 1 cut(s) 596
CviAII CATG 3 cut(s) 392, 443, 480
CviJI RGCY 8 cut(s) 80, 205, 258, 416, 428, 437, 524, 603
CviKI_1 RGCY 8 cut(s) 80, 205, 258, 416, 428, 437, 524, 603
CviQI GTAC 1 cut(s) 596
DdeI CTNAG 3 cut(s) 84, 173, 276
DpnI GATC 3 cut(s) 96, 129, 585
DpnII GATC 3 cut(s) 94, 127, 583
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 418
Eco32I GATATC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 416
Eco81I CCTNAGG 1 cut(s) 173
Eco88I CYCGRG 2 cut(s) 61, 452
EcoICRI GAGCTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 75
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 395, 446, 483
FaiI YATR 8 cut(s) 125, 200, 234, 242, 393, 444, 481, 494
FatI CATG 3 cut(s) 391, 442, 479
Fnu4HI GCNGC 6 cut(s) 39, 147, 256, 347, 384, 429
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 6 cut(s) 39, 147, 256, 347, 384, 429
GluI GCNGC 6 cut(s) 39, 147, 256, 347, 384, 429
HaeIII GGCC 1 cut(s) 524
HapII CCGG 1 cut(s) 62
Hin1II CATG 3 cut(s) 395, 446, 483
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 4 cut(s) 5, 272, 293, 590
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 297, 598
Hpy188I TCNGA 5 cut(s) 27, 99, 277, 425, 472
Hpy188III TCNNGA 5 cut(s) 131, 194, 443, 454, 587
Hpy8I GTNNAC 2 cut(s) 297, 598
Hpy99I CGWCG 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 2 cut(s) 162, 263
HpyCH4V TGCA 5 cut(s) 212, 346, 431, 529, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 255, 346, 434
HpyF3I CTNAG 3 cut(s) 84, 173, 276
HpySE526I ACGT 2 cut(s) 162, 263
Hsp92II CATG 3 cut(s) 395, 446, 483
Kzo9I GATC 3 cut(s) 94, 127, 583
LmnI GCTCC 4 cut(s) 46, 187, 234, 413
LpnPI CCDG 7 cut(s) 6, 62, 75, 89, 345, 387, 600
Lsp1109I GCAGC 5 cut(s) 25, 133, 267, 358, 415
LweI GCATC 4 cut(s) 65, 157, 199, 477
MaeII ACGT 2 cut(s) 162, 263
MaeIII GTNAC 1 cut(s) 372
MalI GATC 3 cut(s) 96, 129, 585
MboI GATC 3 cut(s) 94, 127, 583
MboII GAAGA 3 cut(s) 485, 496, 593
MflI RGATCY 2 cut(s) 127, 583
MhlI GDGCHC 3 cut(s) 231, 251, 418
MluCI AATT 1 cut(s) 13
MlyI GAGTC 2 cut(s) 302, 599
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 6 cut(s) 19, 100, 112, 304, 461, 526
MseI TTAA 2 cut(s) 321, 546
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 3 cut(s) 62, 63, 77
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 3 cut(s) 255, 346, 434
NciI CCSGG 2 cut(s) 62, 63
NdeII GATC 3 cut(s) 94, 127, 583
NlaIII CATG 3 cut(s) 395, 446, 483
NlaIV GGNNCC 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 452
PagI TCATGA 1 cut(s) 442
PfeI GAWTC 2 cut(s) 5, 272
PkrI GCNGC 6 cut(s) 40, 148, 257, 348, 385, 430
PleI GAGTC 2 cut(s) 301, 598
PpsI GAGTC 2 cut(s) 301, 598
Psp124BI GAGCTC 1 cut(s) 418
Psp1406I AACGTT 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 2 cut(s) 127, 583
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 418
SaqAI TTAA 2 cut(s) 321, 546
SatI GCNGC 6 cut(s) 39, 147, 256, 347, 384, 429
Sau3AI GATC 3 cut(s) 94, 127, 583
SchI GAGTC 2 cut(s) 302, 599
ScrFI CCNGG 3 cut(s) 62, 63, 77
SduI GDGCHC 3 cut(s) 231, 251, 418
SetI ASST 8 cut(s) 115, 165, 207, 266, 418, 430, 439, 453
SfaNI GCATC 4 cut(s) 65, 157, 199, 477
SfcI CTRYAG 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 452
SmaI CCCGGG 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 250, 452
SmoI CTYRAG 2 cut(s) 250, 452
Sse9I AATT 1 cut(s) 13
SsiI CCGC 2 cut(s) 384, 536
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 3 cut(s) 60, 61, 75
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 2 cut(s) 165, 266
TaqI TCGA 6 cut(s) 17, 69, 165, 291, 453, 541
TasI AATT 1 cut(s) 13
TatI WGTACW 1 cut(s) 595
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 2 cut(s) 5, 272
Tru1I TTAA 2 cut(s) 321, 546
Tru9I TTAA 2 cut(s) 321, 546
TscAI CASTG 4 cut(s) 214, 231, 342, 564
TseI GCWGC 5 cut(s) 38, 146, 255, 346, 428
TspMI CCCGGG 1 cut(s) 61
TspRI CASTG 4 cut(s) 214, 231, 342, 564
XhoI CTCGAG 1 cut(s) 452
XmaI CCCGGG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.