Rmu_sc0002923.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002923.1
OG0000489
Physical Location & Seq
Forward (+)
141 .. 617
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002923.1_g000001.1.cds

Sequence Viewer

Length: 477 bp
atggtagtatctgcactcatagcaactgtaaccttcgcagcaggtttcactgtgcctggtggttaccaaagtgaaaaagggccagatcaaggttttgcagttctatcaagaaatgcagctttcaaggcgtttgtgataacaaatacattagccatgactctgtccagtagtgctgtcatgctacgctttctctcatcactgaactggtcagattcattattaactgtggcgctaaattgtacctttttcgctctgattgcaatggtggctgcattccttaccggtgcatatgcagtattagggggtcattcttcattaggacttgccattgcgaattgtgtgcttggggctggcttcttctcagctatatgttttgtctctatttctccagctttcagtacttttcgtaatcgtgtctctcttctccatcgccgcataattaccctgctcggattggaatcagtatttttttattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

158

Amino Acids

16.67

Weight (kDa)

9.35

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000489)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10380 FvH4_1g10390 FvH4_1g10400 FvH4_1g10401 FvH4_1g10402 FvH4_1g10430 FvH4_1g10430 FvH4_1g12830 FvH4_1g12830 FvH4_1g12850 FvH4_1g12870
malus_domestica MD02G1014000.v1.1 MD02G1116900.v1.1 MD02G1117100.v1.1 MD07G1083500.v1.1 MD15G1231900.v1.1 MD15G1232000.v1.1 MD15G1232100.v1.1 MD15G1232200.v1.1
prunus_persica Prupe.7G182000_v2.0.a1 Prupe.7G182300_v2.0.a1 Prupe.7G182400_v2.0.a1 Prupe.7G182500_v2.0.a1 Prupe.7G182600_v2.0.a1
pyrus_communis pycom02g09070 pycom02g09080 pycom08g18250 pycom08g18260 pycom08g18270 pycom08g18280 pycom08g18290 pycom15g20630 pycom15g20650 pycom15g20660
rosa_chinensis RchiOBHm_Chr2g0097241 RchiOBHm_Chr7g0213401 RchiOBHm_Chr7g0237491
rosa_laevigata RLG00000000998 RLG00000002808 RLG00000016714
rosa_multiflora Rmu_co8242583.1_g000001 Rmu_sc0002425.1_g000003 Rmu_sc0002425.1_g000009 Rmu_sc0002923.1_g000001 Rmu_sc0036942.1_g000001 Rmu_ssc0000262.1_g000026 Rmu_ssc0000262.1_g000027
rosa_roxburghii Rroxscaffold_2G00144810 Rroxscaffold_2G00144850 Rroxscaffold_3G00224130 Rroxscaffold_3G00245990 Rroxscaffold_6G00396730
rosa_rugosa Rorug02G0054300 Rorug02G0055200 Rorug02G0065700 Rorug05G0283500 Rorug07G0303700
rosa_samantha Rh2AG112200 Rh2AG299500 Rh2BG114800 Rh2CG116800 Rh2CG117000 Rh2DG116000 Rh2DG116200 Rh2DG323600 Rh6AG214000 Rh6CG172700 Rh6DG163900 Rh7AG273800 Rh7AG461200 Rh7BG306800 Rh7BG307200 Rh7BG431000 Rh7BG431300 Rh7CG292900 Rh7CG478400 Rh7DG281200 Rh7DG323600 Rh7DG323700 Rh7DG447700
rosa_wichuraiana Rw0G001860 Rw1G008050 Rw1G011650 Rw2G008760 Rw2G008770 Rw3G028490 Rw6G018710 Rw7G023740 Rw7G038160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AciI CCGC 1 cut(s) 433
AfaI GTAC 2 cut(s) 241, 400
AfiI CCNNNNNNNGG 1 cut(s) 89
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 3 cut(s) 119, 365, 392
AluI AGCT 3 cut(s) 119, 365, 392
Alw26I GTCTC 2 cut(s) 382, 421
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 38, 116, 269
AsiGI ACCGGT 1 cut(s) 281
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 80
BbvI GCAGC 3 cut(s) 50, 128, 256
BccI CCATC 1 cut(s) 435
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 382, 421
BfoI RGCGCY 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 4 cut(s) 39, 117, 270, 433
BlsI GCNGC 4 cut(s) 40, 118, 271, 434
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 457
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 165, 209
Bse3DI GCAATG 2 cut(s) 267, 327
Bse8I GATNNNNATC 1 cut(s) 457
BseBI CCWGG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 2 cut(s) 267, 327
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 165, 209
BseXI GCAGC 3 cut(s) 50, 128, 256
BshFI GGCC 1 cut(s) 82
BshTI ACCGGT 1 cut(s) 281
BsiSI CCGG 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 2 cut(s) 382, 421
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 433
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 32
BsrDI GCAATG 2 cut(s) 267, 327
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 2 cut(s) 165, 209
BssAI RCCGGY 1 cut(s) 281
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 28, 52, 226
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 361
BstEII GGTNACC 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 382, 421
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 20, 125, 257, 266
BstNI CCWGG 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 3 cut(s) 50, 128, 256
BsuRI GGCC 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 413
BtsIMutI CAGTG 2 cut(s) 48, 197
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 240, 399
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 2 cut(s) 154, 178
CviJI RGCY 8 cut(s) 82, 119, 152, 269, 350, 354, 365, 392
CviKI_1 RGCY 8 cut(s) 82, 119, 152, 269, 350, 354, 365, 392
CviQI GTAC 2 cut(s) 240, 399
DdeI CTNAG 1 cut(s) 361
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 157, 181
FaiI YATR 8 cut(s) 20, 155, 179, 289, 291, 368, 370, 437
FatI CATG 2 cut(s) 153, 177
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 4 cut(s) 39, 117, 270, 433
Fsp4HI GCNGC 4 cut(s) 39, 117, 270, 433
GlaI GCGC 1 cut(s) 231
GluI GCNGC 4 cut(s) 39, 117, 270, 433
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 82
HapII CCGG 1 cut(s) 282
HhaI GCGC 1 cut(s) 232
Hin1II CATG 2 cut(s) 157, 181
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 3 cut(s) 157, 212, 458
HpaII CCGG 1 cut(s) 282
Hpy188I TCNGA 3 cut(s) 211, 255, 452
Hpy188III TCNNGA 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 3 cut(s) 28, 52, 226
HpyCH4V TGCA 7 cut(s) 14, 98, 116, 260, 272, 287, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 125, 257, 266
HpyF3I CTNAG 1 cut(s) 361
Hsp92II CATG 2 cut(s) 157, 181
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 85
Lsp1109I GCAGC 3 cut(s) 50, 128, 256
MaeIII GTNAC 2 cut(s) 28, 62
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 303, 349, 413
MluCI AATT 3 cut(s) 235, 334, 438
MlyI GAGTC 1 cut(s) 151
MseI TTAA 1 cut(s) 221
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 4 cut(s) 20, 125, 257, 266
NdeI CATATG 1 cut(s) 289
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 157, 181
PctI GAATGC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 212, 458
PflFI GACNNNGTC 1 cut(s) 160
PinAI ACCGGT 1 cut(s) 281
PkrI GCNGC 4 cut(s) 40, 118, 271, 434
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 55
PspPI GGNCC 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 160
RsaI GTAC 2 cut(s) 241, 400
RsaNI GTAC 2 cut(s) 240, 399
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 4 cut(s) 39, 117, 270, 433
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 80
ScaI AGTACT 1 cut(s) 400
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 57
SetI ASST 7 cut(s) 35, 46, 94, 121, 245, 367, 394
Sse9I AATT 3 cut(s) 235, 334, 438
SsiI CCGC 1 cut(s) 433
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 28, 52, 226
TasI AATT 3 cut(s) 235, 334, 438
TatI WGTACW 1 cut(s) 398
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 2 cut(s) 212, 458
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 2 cut(s) 55, 204
TseI GCWGC 3 cut(s) 38, 116, 269
TspDTI ATGAA 2 cut(s) 204, 303
TspRI CASTG 2 cut(s) 55, 204
Tth111I GACNNNGTC 1 cut(s) 160
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.