Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009986

Physical Location & Seq

Genomic Coordinates Forward (+)

10039696 .. 10045669

Gene Structure 5974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG112400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGAGTGAATCGCCATTTGATGATCCGATCGAACCGACTTCCTTCGACCTTATCGTCATCGGAACCGGCCTCCCGGAGTCAGTAATCGCTGCAGCAGCCTCTACTTCCGGCAAAACTGTTCTCCAGCTTGACCCTAACGACTCCTACGGCAGCCACTTTGCTTCTCATACACTTGATGACCTCACTTCCTTCCTGAATTCACATGCTACTCCACCTCCCTCCACCGCCGGCGTTACAAGTAGTGAAGGTGATTATACTACATTGGATCTCAATCCCCGTTCGCTGTACTCCCACATTGAGACCGCCAACTATGCCCCGGAAATCCTTTCAGAACATTCGAGGAGATTCCTTATTGACATTGGCGGGCCGAGGGTGCTGTTCTGTGGTGACAAGGCCATTGAGCTTATATTGAAGTCGGGTGTGGGGTCGTATTTGAATTTCAAGGCTGTTGATGGGAACTTGATTTGGGATGAGAGCAGCGGCGGGTTGTGTAATGTGCCGGACTCAAGAGCAGCGATATTTAAAGACAAGGGCATGAGTCTTAAAGAGAAGAATCAGTTGATGAGGTTCTTCAAGCTTGTTCAGCAGCACTTGGCAGCAGCCTCTGATGGTGGTGAAGAAGATAATGAGAGTTCAAAGATTTCTGAGGAGGATTTGGAGACCCCATTTGTTGACTTCTTAACAACACGGCTGCCGCACAAGATTAAATCGATTATCCTTTATTCCATTGCAATGGTTGATTATGATCAAGACAACTCAAAAGTTTGTAAAAGTATACTGAAGACAAGAGATGGGATATCGCGTTTAGCTCTCTATCAAAAATCAGTTGGCAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTATCACAAGCCTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTCTTCAAGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTAGTTTCAGGTCAGGATTTGTTGAGTCATCGGCTGGTTATGGATCCAACCTTCACGGTCCCACTGCCACCGGCTTCATCTCCACCAGACCTTCCAAAAGAAAGTCTGAAAGGTGATAAAAGAAAGGTGGCCAGGGGAATATGTATTACAACAAGATCCTTGAAGCCAGATATGTCAAACTTATTGCTTGTGTATCCTCCTAGATCTTTGTTTTCTGAGCAGGACACTTCAGTCCGAGCTATCCAGATTCGTGGTGGAACAGATGGTGGCGGTTTGGCTGTTTGTCCATCGAGCATGTATGTTTATGCTAAGTATTTGAAGACAACAGTATCACTGAGTTTCTCACATTTTTTTTTTGTCCTTTTTGTCCTGTCTCTTTTTTTAACCTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

464

Amino Acids

50.87

Weight (kDa)

6.22

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDI	PF00996	14 - 93	1.6e-08	GDP dissociation inhibitor
GDI	PF00996	90 - 352	2e-26	GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06540
fragaria_vesca	FvH4_1g10450
malus_domestica	MD02G1117700.v1.1 MD10G1065000.v1.1 MD15G1232400.v1.1 MD17G1057100.v1.1
prunus_persica	Prupe.7G181700_v2.0.a1
pyrus_communis	pycom02g09110 pycom10g05080 pycom15g20680 pycom17g05720
rosa_chinensis	RchiOBHm_Chr2g0097311
rosa_laevigata	RLG00000016716
rosa_multiflora	Rmu_sc0002425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144790
rosa_rugosa	Rorug02G0065700
rosa_samantha	Rh2AG112400 Rh2BG115100 Rh2CG117200 Rh2DG116400
rosa_wichuraiana	Rw2G008790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	53, 1229
Acc36I	ACCTGC	1 cut(s)	822
AccI	GTMKAC	1 cut(s)	775
AccII	CGCG	1 cut(s)	802
AciI	CCGC	8 cut(s)	225, 303, 363, 480, 483, 695, 904, 1269
AclWI	GGATC	5 cut(s)	17, 273, 1037, 1050, 1149
AcoI	YGGCCR	1 cut(s)	1128
AcsI	RAATTY	2 cut(s)	196, 436
AcuI	CTGAAG	2 cut(s)	800, 1212
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	872
AgsI	TTSAA	8 cut(s)	412, 436, 442, 574, 636, 932, 1162, 1318
AjnI	CCWGG	1 cut(s)	1130
AluBI	AGCT	6 cut(s)	127, 403, 577, 809, 854, 1238
AluI	AGCT	6 cut(s)	127, 403, 577, 809, 854, 1238
Alw26I	GTCTC	3 cut(s)	293, 653, 1377
AlwI	GGATC	5 cut(s)	17, 273, 1037, 1050, 1149
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	5 cut(s)	67, 365, 393, 944, 1128
ApoI	RAATTY	2 cut(s)	196, 436
AspS9I	GGNCC	2 cut(s)	365, 1057
AsuC2I	CCSGG	2 cut(s)	74, 317
AsuHPI	GGTGA	4 cut(s)	260, 398, 626, 1124
AvaII	GGWCC	1 cut(s)	1057
BaeI	ACNNNNGTAYC	2 cut(s)	1311, 1344
BalI	TGGCCA	1 cut(s)	1130
BamHI	GGATCC	1 cut(s)	1042
BbsI	GAAGAC	3 cut(s)	788, 920, 1325
BccI	CCATC	5 cut(s)	446, 602, 785, 1256, 1294
BceAI	ACGGC	3 cut(s)	163, 704, 891
BciT130I	CCWGG	1 cut(s)	1132
BciVI	GTATCC	1 cut(s)	1203
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	2 cut(s)	74, 317
BcoDI	GTCTC	3 cut(s)	293, 653, 1377
BfaI	CTAG	1 cut(s)	1200
BfmI	CTRYAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	822
BfuI	GTATCC	1 cut(s)	1203
BglII	AGATCT	1 cut(s)	1202
Bme1390I	CCNGG	3 cut(s)	74, 317, 1132
Bme18I	GGWCC	1 cut(s)	1057
BmgT120I	GGNCC	2 cut(s)	365, 1057
BmiI	GGNNCC	3 cut(s)	64, 1044, 1059
BmrFI	CCNGG	3 cut(s)	74, 317, 1132
BmsI	GCATC	1 cut(s)	832
BpiI	GAAGAC	3 cut(s)	788, 920, 1325
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	490
BpuMI	CCSGG	2 cut(s)	74, 317
Bsa29I	ATCGAT	1 cut(s)	710
BsaBI	GATNNNNATC	2 cut(s)	270, 744
BsaI	GGTCTC	2 cut(s)	293, 653
BsaJI	CCNNGG	3 cut(s)	315, 368, 1131
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse118I	RCCGGY	3 cut(s)	65, 227, 1069
Bse1I	ACTGG	1 cut(s)	947
Bse3DI	GCAATG	2 cut(s)	726, 738
Bse8I	GATNNNNATC	2 cut(s)	270, 744
BseBI	CCWGG	1 cut(s)	1132
BseCI	ATCGAT	1 cut(s)	710
BseDI	CCNNGG	3 cut(s)	315, 368, 1131
BseGI	GGATG	1 cut(s)	475
BseJI	GATNNNNATC	2 cut(s)	270, 744
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	2 cut(s)	726, 738
BseMII	CTCAG	3 cut(s)	636, 1206, 1325
BseNI	ACTGG	1 cut(s)	947
BseRI	GAGGAG	2 cut(s)	355, 662
Bsh1236I	CGCG	1 cut(s)	802
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	5 cut(s)	69, 367, 395, 946, 1130
BshVI	ATCGAT	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	7 cut(s)	66, 74, 108, 228, 317, 500, 1070
BslFI	GGGAC	1 cut(s)	1043
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	3 cut(s)	293, 653, 1377
BsmFI	GGGAC	1 cut(s)	1043
BsnI	GGCC	5 cut(s)	69, 367, 395, 946, 1130
Bso31I	GGTCTC	2 cut(s)	293, 653
Bsp143I	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
BspACI	CCGC	8 cut(s)	225, 303, 363, 480, 483, 695, 904, 1269
BspANI	GGCC	5 cut(s)	69, 367, 395, 946, 1130
BspCNI	CTCAG	3 cut(s)	637, 1207, 1326
BspDI	ATCGAT	1 cut(s)	710
BspFNI	CGCG	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	64, 1044, 1059
BspMAI	CTGCAG	1 cut(s)	94
BspMI	ACCTGC	1 cut(s)	822
BspPI	GGATC	5 cut(s)	17, 273, 1037, 1050, 1149
BspTNI	GGTCTC	2 cut(s)	293, 653
BsrDI	GCAATG	2 cut(s)	726, 738
BsrFI	RCCGGY	3 cut(s)	65, 227, 1069
BsrI	ACTGG	1 cut(s)	947
BssAI	RCCGGY	3 cut(s)	65, 227, 1069
BssECI	CCNNGG	3 cut(s)	315, 368, 1131
BssMI	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
BssNAI	GTATAC	1 cut(s)	776
Bst1107I	GTATAC	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	1132
Bst4CI	ACNGT	3 cut(s)	118, 1057, 1327
BstC8I	GCNNGC	2 cut(s)	229, 365
BstDEI	CTNAG	4 cut(s)	645, 1215, 1308, 1334
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	802
BstKTI	GATC	7 cut(s)	25, 30, 268, 748, 1045, 1157, 1205
BstMAI	GTCTC	3 cut(s)	293, 653, 1377
BstMBI	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 311, 373, 583, 851
BstNI	CCWGG	1 cut(s)	1132
BstNSI	RCATGY	2 cut(s)	206, 1297
BstSCI	CCNGG	3 cut(s)	72, 315, 1130
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	802
BstV2I	GAAGAC	3 cut(s)	788, 920, 1325
BstX2I	RGATCY	4 cut(s)	265, 1042, 1154, 1202
BstXI	CCANNNNNNTGG	2 cut(s)	733, 1250
BstYI	RGATCY	4 cut(s)	265, 1042, 1154, 1202
BstZ17I	GTATAC	1 cut(s)	776
Bsu15I	ATCGAT	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	1203
BsuRI	GGCC	5 cut(s)	69, 367, 395, 946, 1130
BsuTUI	ATCGAT	1 cut(s)	710
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	1061
BtsIMutI	CAGTG	3 cut(s)	954, 1061, 1331
BveI	ACCTGC	1 cut(s)	822
Cac8I	GCNNGC	2 cut(s)	229, 365
CaiI	CAGNNNCTG	1 cut(s)	605
Cfr10I	RCCGGY	3 cut(s)	65, 227, 1069
Cfr13I	GGNCC	2 cut(s)	365, 1057
ClaI	ATCGAT	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	286
CspCI	CAANNNNNGTGG	2 cut(s)	958, 993
CviAII	CATG	4 cut(s)	203, 535, 878, 1294
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	645, 1215, 1308, 1334
DpnI	GATC	7 cut(s)	24, 29, 267, 747, 1044, 1156, 1204
DpnII	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
DraI	TTTAAA	1 cut(s)	523
DrdI	GACNNNNNNGTC	2 cut(s)	53, 1229
DseDI	GACNNNNNNGTC	2 cut(s)	53, 1229
EaeI	YGGCCR	1 cut(s)	1128
Eco31I	GGTCTC	2 cut(s)	293, 653
Eco32I	GATATC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	1057
Eco57I	CTGAAG	2 cut(s)	800, 1212
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	1130
EcoRV	GATATC	1 cut(s)	798
FaeI	CATG	4 cut(s)	206, 538, 881, 1297
FalI	AAGNNNNNCTT	2 cut(s)	912, 944
FaqI	GGGAC	1 cut(s)	1043
FatI	CATG	4 cut(s)	202, 534, 877, 1293
FauI	CCCGC	2 cut(s)	356, 476
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	775
FokI	GGATG	1 cut(s)	482
FspBI	CTAG	1 cut(s)	1200
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	5 cut(s)	69, 367, 395, 946, 1130
HapII	CCGG	7 cut(s)	66, 74, 108, 228, 317, 500, 1070
Hin1II	CATG	4 cut(s)	206, 538, 881, 1297
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	9 cut(s)	8, 77, 140, 345, 503, 538, 553, 1024, 1246
HpaII	CCGG	7 cut(s)	66, 74, 108, 228, 317, 500, 1070
HphI	GGTGA	4 cut(s)	260, 398, 626, 1124
Hpy166II	GTNNAC	2 cut(s)	673, 776
Hpy188I	TCNGA	8 cut(s)	27, 62, 331, 607, 646, 1107, 1216, 1235
Hpy188III	TCNNGA	6 cut(s)	193, 507, 749, 839, 1013, 1243
Hpy8I	GTNNAC	2 cut(s)	673, 776
HpyAV	CCTTC	6 cut(s)	52, 199, 239, 936, 1060, 1100
HpyCH4III	ACNGT	3 cut(s)	118, 1057, 1327
HpyCH4V	TGCA	2 cut(s)	92, 731
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 311, 373, 583, 851
HpyF3I	CTNAG	4 cut(s)	645, 1215, 1308, 1334
Hsp92II	CATG	4 cut(s)	206, 538, 881, 1297
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
LmnI	GCTCC	1 cut(s)	851
LweI	GCATC	1 cut(s)	832
MaeI	CTAG	1 cut(s)	1200
MaeIII	GTNAC	2 cut(s)	232, 386
MalI	GATC	7 cut(s)	24, 29, 267, 747, 1044, 1156, 1204
MboI	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
MboII	GAAGA	7 cut(s)	562, 562, 629, 632, 793, 920, 1330
MflI	RGATCY	4 cut(s)	265, 1042, 1154, 1202
MlsI	TGGCCA	1 cut(s)	1130
MluCI	AATT	2 cut(s)	196, 436
MluNI	TGGCCA	1 cut(s)	1130
MlyI	GAGTC	5 cut(s)	86, 134, 497, 547, 1033
MmeI	TCCRAC	1 cut(s)	1070
Mox20I	TGGCCA	1 cut(s)	1130
MreI	CGCCGGCG	1 cut(s)	227
MroNI	GCCGGC	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	1130
MseI	TTAA	6 cut(s)	522, 543, 680, 705, 918, 1382
MslI	CAYNNNNRTG	1 cut(s)	731
Msp20I	TGGCCA	1 cut(s)	1130
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	7 cut(s)	66, 74, 108, 228, 317, 500, 1070
MspR9I	CCNGG	3 cut(s)	74, 317, 1132
MvaI	CCWGG	1 cut(s)	1132
MvnI	CGCG	1 cut(s)	802
MwoI	GCNNNNNNNGC	5 cut(s)	95, 311, 373, 583, 851
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	2 cut(s)	74, 317
NdeII	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	206, 538, 881, 1297
NlaIV	GGNNCC	3 cut(s)	64, 1044, 1059
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	2 cut(s)	206, 1297
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	8, 345, 553, 1246
PfoI	TCCNGGA	1 cut(s)	72
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	5 cut(s)	85, 134, 497, 546, 1032
PpsI	GAGTC	5 cut(s)	85, 134, 497, 546, 1032
Psp6I	CCWGG	1 cut(s)	1130
PspGI	CCWGG	1 cut(s)	1130
PspN4I	GGNNCC	3 cut(s)	64, 1044, 1059
PspPI	GGNCC	2 cut(s)	365, 1057
PstI	CTGCAG	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	4 cut(s)	265, 1042, 1154, 1202
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	6 cut(s)	522, 543, 680, 705, 918, 1382
Sau3AI	GATC	7 cut(s)	22, 27, 265, 745, 1042, 1154, 1202
Sau96I	GGNCC	2 cut(s)	365, 1057
SchI	GAGTC	5 cut(s)	86, 134, 497, 547, 1033
ScrFI	CCNGG	3 cut(s)	74, 317, 1132
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	1 cut(s)	90
SgrAI	CRCCGGYG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	1057
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	2 cut(s)	196, 436
SsiI	CCGC	8 cut(s)	225, 303, 363, 480, 483, 695, 904, 1269
SspMI	CTAG	1 cut(s)	1200
StyD4I	CCNGG	3 cut(s)	72, 315, 1130
TaaI	ACNGT	3 cut(s)	118, 1057, 1327
TaqI	TCGA	5 cut(s)	30, 45, 338, 710, 1289
TasI	AATT	2 cut(s)	196, 436
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	3 cut(s)	483, 697, 906
TfiI	GAWTC	4 cut(s)	8, 345, 553, 1246
Tru1I	TTAA	6 cut(s)	522, 543, 680, 705, 918, 1382
Tru9I	TTAA	6 cut(s)	522, 543, 680, 705, 918, 1382
TscAI	CASTG	3 cut(s)	954, 1068, 1338
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	1065
TspRI	CASTG	3 cut(s)	954, 1068, 1338
VpaK11BI	GGWCC	1 cut(s)	1057
XapI	RAATTY	2 cut(s)	196, 436
XceI	RCATGY	2 cut(s)	206, 1297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1250
XmiI	GTMKAC	1 cut(s)	775
XspI	CTAG	1 cut(s)	1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.