Rw2G008790

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
8800476 .. 8805400
4925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008790.1

Sequence Viewer

Length: 1677 bp
ATGAGTGAATCGCCATTTGATGATCCGATCGAACCGACTTCCTTCGACCTTATCGTCATCGGAACCGGCCTCCCGGAGTCAGTAATTGCTGCAGCAGCCTCTACTTCCGGCAAAACTGTTCTCCAGCTTGACCCTAACGACTCCTACGGCAGCCACTTTGCCTCTCACACACTTGATGACCTCACTTCCTTCCTGAATTCACATGCGACTCCACCTCCCTCCACCGCCGGCGTTACAAGCAGCGAAGGTGATTATACTACATTGGATCTCAATCCCCGTTCGCTGTACTCCCACATTGAGACCGCCAACTATGCCCCGGAAATCCTTGCAGAGCATTCGAGGAGATTCCTTATTGACATTGGCGGGCCGAGGGTGCTGTTCTGTGGTGACAAGGCCATTGAGCTTATATTGAAGTCGGGTGTGGGGTCGTATTTGAATTTCAAGGCTGTTGATGGGAACTTGATTTGGGATGAGAGTAGCGGCGGGTTGTGTAATGTGCCGGACTCAAGAGCAGCGATATTTAAAGACAAGGGCATGAGTCTTAAAGAGAAGAATCAGTTGATGAGGTTCTTCAAGCTTGTTCAGCAGCACTTGGCAGCAGCAGCCTCTGATGGTGGTGAACAAGAAGATAATGAGAGTTCACAGATTTCTGAGGAGGATTTGGAGACCCCATTTGTTGACTTCTTAACAACACGGCTGCCGCACAAGATTAAATCGATTATCCTTTATTCCATTGCAATGGTTGATTATGATCAAGACAACTCAAAAGTTTGTAAAAGTATACTGAAGACAAGAGATGGGATATCGCGTTTAGCTCTCTATCAAAAATCAGTTGGCAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTATCACAAGCCTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTCTTCAAGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTAGTTTCAGGTCAGGATTTGTTGAGTCATCGGCTGGTTATGGATCCAACCTTCACGGTCCCACTGCCACCGGCTTCATCTCCACCAGACCTTCCAAAAGAAAGTCTGAAAGGTGATAAAAGAAAGGTGGCCAGGGGAATATGTATTACAACAAGATCCTTGAAGCCAGATATATCAAACTTATTGCTTGTGTATCCTCCTAGATCTTTGTTTTCTGAGCAGGACACTTCAGTCCGAGCTATCCAGATTCGTGGTGGAACAGATGGTGGCGGTTTGGCTGTTTGTCCATCGAGCATGTTTGTGTTGTACTTTTCTGCTCTATGTGATGATGCTGAACAAGGGAAAAGGTTGCTACATGCGGCCATGAATGCTCTTCTCACACTTCCTGTTTCTGGAAATCTTGAAAGTGGTTCCACAGTTCAAAGTGAAGACGCAGAACTAAAACCCACCTTACTTTGGAGCATGCTATACATTCAGGAGATCACAACGGGTCAATATGAACATCTCATCTCCACTCCCATGCCAGATGGAAATCTCAACTATGATGATCTGCTGGATGAAACTGTTCTGCTCTTCCAGAAAATGTATCCAGACGAGGCATTCTTTCCAGAGACACCTTCCTTGCCCGAGAATCCAGAAGAGGATATTGAAGGGCTTAGTCTTGAAGACTGA

Protein Analysis

558

Amino Acids

61.06

Weight (kDa)

4.81

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 14 - 93 2.1e-08 GDP dissociation inhibitor
GDI PF00996 90 - 354 7.3e-26 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 1235
Acc36I ACCTGC 1 cut(s) 828
AccI GTMKAC 1 cut(s) 781
AccII CGCG 1 cut(s) 808
AciI CCGC 9 cut(s) 225, 303, 363, 480, 483, 701, 910, 1275, 1364
AclWI GGATC 5 cut(s) 17, 273, 1043, 1056, 1155
AcoI YGGCCR 2 cut(s) 1134, 1365
AcsI RAATTY 2 cut(s) 196, 436
AcuI CTGAAG 2 cut(s) 806, 1218
AfaI GTAC 2 cut(s) 287, 1313
AfiI CCNNNNNNNGG 3 cut(s) 878, 1397, 1461
AjnI CCWGG 1 cut(s) 1136
AluBI AGCT 6 cut(s) 127, 403, 577, 815, 860, 1244
AluI AGCT 6 cut(s) 127, 403, 577, 815, 860, 1244
Alw26I GTCTC 3 cut(s) 293, 659, 1610
AlwI GGATC 5 cut(s) 17, 273, 1043, 1056, 1155
AlwNI CAGNNNCTG 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 1631
AoxI GGCC 6 cut(s) 67, 365, 393, 950, 1134, 1365
ApoI RAATTY 2 cut(s) 196, 436
Asp700I GAANNNNTTC 1 cut(s) 1569
AspS9I GGNCC 2 cut(s) 365, 1063
AsuC2I CCSGG 2 cut(s) 74, 317
AsuHPI GGTGA 4 cut(s) 260, 398, 629, 1130
AvaI CYCGRG 1 cut(s) 1631
AvaII GGWCC 1 cut(s) 1063
BalI TGGCCA 1 cut(s) 1136
BamHI GGATCC 1 cut(s) 1048
BbsI GAAGAC 3 cut(s) 794, 926, 1440
BccI CCATC 6 cut(s) 446, 605, 791, 1262, 1300, 1526
BceAI ACGGC 3 cut(s) 163, 710, 897
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 1138
BciVI GTATCC 2 cut(s) 1209, 1602
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 2 cut(s) 74, 317
BcoDI GTCTC 3 cut(s) 293, 659, 1610
BfaI CTAG 1 cut(s) 1206
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 828
BfuI GTATCC 2 cut(s) 1209, 1602
BglII AGATCT 1 cut(s) 1208
Bme1390I CCNGG 3 cut(s) 74, 317, 1138
Bme18I GGWCC 1 cut(s) 1063
BmeT110I CYCGRG 1 cut(s) 1631
BmgT120I GGNCC 2 cut(s) 365, 1063
BmiI GGNNCC 4 cut(s) 64, 1050, 1065, 1417
BmrFI CCNGG 3 cut(s) 74, 317, 1138
BmsI GCATC 2 cut(s) 838, 1324
BpiI GAAGAC 3 cut(s) 794, 926, 1440
BpmI CTGGAG 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 2 cut(s) 74, 317
Bsa29I ATCGAT 1 cut(s) 716
BsaBI GATNNNNATC 3 cut(s) 270, 750, 1536
BsaI GGTCTC 2 cut(s) 293, 659
BsaJI CCNNGG 3 cut(s) 315, 368, 1137
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 3 cut(s) 878, 1397, 1461
Bse118I RCCGGY 3 cut(s) 65, 227, 1075
Bse1I ACTGG 1 cut(s) 953
Bse3DI GCAATG 2 cut(s) 732, 744
Bse8I GATNNNNATC 3 cut(s) 270, 750, 1536
BseBI CCWGG 1 cut(s) 1138
BseCI ATCGAT 1 cut(s) 716
BseDI CCNNGG 3 cut(s) 315, 368, 1137
BseGI GGATG 2 cut(s) 475, 1567
BseJI GATNNNNATC 3 cut(s) 270, 750, 1536
BseLI CCNNNNNNNGG 3 cut(s) 878, 1397, 1461
BseMI GCAATG 2 cut(s) 732, 744
BseMII CTCAG 2 cut(s) 642, 1212
BseNI ACTGG 1 cut(s) 953
BseRI GAGGAG 2 cut(s) 355, 668
Bsh1236I CGCG 1 cut(s) 808
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 6 cut(s) 69, 367, 395, 952, 1136, 1367
BshVI ATCGAT 1 cut(s) 716
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 1631
BsiSI CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1076
BslFI GGGAC 1 cut(s) 1049
BslI CCNNNNNNNGG 3 cut(s) 878, 1397, 1461
BsmAI GTCTC 3 cut(s) 293, 659, 1610
BsmFI GGGAC 1 cut(s) 1049
BsmI GAATGC 3 cut(s) 334, 1378, 1604
BsnI GGCC 6 cut(s) 69, 367, 395, 952, 1136, 1367
Bso31I GGTCTC 2 cut(s) 293, 659
BsoBI CYCGRG 1 cut(s) 1631
Bsp143I GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
BspACI CCGC 9 cut(s) 225, 303, 363, 480, 483, 701, 910, 1275, 1364
BspANI GGCC 6 cut(s) 69, 367, 395, 952, 1136, 1367
BspCNI CTCAG 2 cut(s) 643, 1213
BspDI ATCGAT 1 cut(s) 716
BspFNI CGCG 1 cut(s) 808
BspLI GGNNCC 4 cut(s) 64, 1050, 1065, 1417
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 828
BspPI GGATC 5 cut(s) 17, 273, 1043, 1056, 1155
BspQI GCTCTTC 2 cut(s) 1383, 1583
BspTNI GGTCTC 2 cut(s) 293, 659
BsrDI GCAATG 2 cut(s) 732, 744
BsrFI RCCGGY 3 cut(s) 65, 227, 1075
BsrI ACTGG 1 cut(s) 953
BssAI RCCGGY 3 cut(s) 65, 227, 1075
BssECI CCNNGG 3 cut(s) 315, 368, 1137
BssMI GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
BssNAI GTATAC 1 cut(s) 782
Bst1107I GTATAC 1 cut(s) 782
Bst2UI CCWGG 1 cut(s) 1138
Bst4CI ACNGT 4 cut(s) 118, 1063, 1423, 1570
Bst6I CTCTTC 3 cut(s) 1383, 1583, 1638
BstC8I GCNNGC 3 cut(s) 229, 365, 1469
BstDEI CTNAG 3 cut(s) 651, 1221, 1661
BstF5I GGATG 2 cut(s) 475, 1567
BstFNI CGCG 1 cut(s) 808
BstKTI GATC 9 cut(s) 25, 30, 268, 754, 1051, 1163, 1211, 1488, 1555
BstMAI GTCTC 3 cut(s) 293, 659, 1610
BstMBI GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 8 cut(s) 95, 237, 311, 373, 583, 602, 857, 1373
BstNI CCWGG 1 cut(s) 1138
BstNSI RCATGY 4 cut(s) 206, 1303, 1364, 1471
BstSCI CCNGG 3 cut(s) 72, 315, 1136
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 1 cut(s) 808
BstV2I GAAGAC 3 cut(s) 794, 926, 1440
BstX2I RGATCY 4 cut(s) 265, 1048, 1160, 1208
BstXI CCANNNNNNTGG 2 cut(s) 739, 1256
BstYI RGATCY 4 cut(s) 265, 1048, 1160, 1208
BstZ17I GTATAC 1 cut(s) 782
Bsu15I ATCGAT 1 cut(s) 716
BsuI GTATCC 2 cut(s) 1209, 1602
BsuRI GGCC 6 cut(s) 69, 367, 395, 952, 1136, 1367
BsuTUI ATCGAT 1 cut(s) 716
BtsCI GGATG 2 cut(s) 475, 1567
BtsI GCAGTG 1 cut(s) 1067
BtsIMutI CAGTG 2 cut(s) 960, 1067
BveI ACCTGC 1 cut(s) 828
Cac8I GCNNGC 3 cut(s) 229, 365, 1469
CaiI CAGNNNCTG 1 cut(s) 608
Cfr10I RCCGGY 3 cut(s) 65, 227, 1075
Cfr13I GGNCC 2 cut(s) 365, 1063
ClaI ATCGAT 1 cut(s) 716
CseI GACGC 1 cut(s) 1445
Csp6I GTAC 2 cut(s) 286, 1312
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 8 cut(s) 203, 535, 884, 1300, 1361, 1369, 1468, 1525
CviQI GTAC 2 cut(s) 286, 1312
DdeI CTNAG 3 cut(s) 651, 1221, 1661
DpnI GATC 9 cut(s) 24, 29, 267, 753, 1050, 1162, 1210, 1487, 1554
DpnII GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
DraI TTTAAA 1 cut(s) 523
DrdI GACNNNNNNGTC 2 cut(s) 53, 1235
DseDI GACNNNNNNGTC 2 cut(s) 53, 1235
EaeI YGGCCR 2 cut(s) 1134, 1365
Eam1104I CTCTTC 3 cut(s) 1383, 1583, 1638
EarI CTCTTC 3 cut(s) 1383, 1583, 1638
Eco31I GGTCTC 2 cut(s) 293, 659
Eco32I GATATC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 1063
Eco57I CTGAAG 2 cut(s) 806, 1218
Eco88I CYCGRG 1 cut(s) 1631
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 1136
EcoRV GATATC 1 cut(s) 804
FaeI CATG 8 cut(s) 206, 538, 887, 1303, 1364, 1372, 1471, 1528
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 1 cut(s) 1049
FatI CATG 8 cut(s) 202, 534, 883, 1299, 1360, 1368, 1467, 1524
FauI CCCGC 2 cut(s) 356, 476
FbaI TGATCA 1 cut(s) 751
FblI GTMKAC 1 cut(s) 781
FokI GGATG 2 cut(s) 482, 1574
FspBI CTAG 1 cut(s) 1206
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 6 cut(s) 69, 367, 395, 952, 1136, 1367
HapII CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1076
HgaI GACGC 1 cut(s) 1445
Hin1II CATG 8 cut(s) 206, 538, 887, 1303, 1364, 1372, 1471, 1528
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 575
HpaII CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1076
HphI GGTGA 4 cut(s) 260, 398, 629, 1130
Hpy166II GTNNAC 4 cut(s) 620, 641, 679, 782
Hpy188I TCNGA 7 cut(s) 27, 62, 610, 652, 1113, 1222, 1241
Hpy8I GTNNAC 4 cut(s) 620, 641, 679, 782
HpyAV CCTTC 8 cut(s) 52, 199, 239, 942, 1066, 1106, 1632, 1649
HpyCH4III ACNGT 4 cut(s) 118, 1063, 1423, 1570
HpyCH4V TGCA 3 cut(s) 92, 329, 737
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 237, 311, 373, 583, 602, 857, 1373
HpyF3I CTNAG 3 cut(s) 651, 1221, 1661
Hsp92II CATG 8 cut(s) 206, 538, 887, 1303, 1364, 1372, 1471, 1528
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
LguI GCTCTTC 2 cut(s) 1383, 1583
LmnI GCTCC 2 cut(s) 857, 1464
LweI GCATC 2 cut(s) 838, 1324
MaeI CTAG 1 cut(s) 1206
MaeIII GTNAC 2 cut(s) 232, 386
MalI GATC 9 cut(s) 24, 29, 267, 753, 1050, 1162, 1210, 1487, 1554
MboI GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
MboII GAAGA 9 cut(s) 562, 562, 638, 799, 926, 1370, 1445, 1570, 1655
MflI RGATCY 4 cut(s) 265, 1048, 1160, 1208
MlsI TGGCCA 1 cut(s) 1136
MluCI AATT 3 cut(s) 84, 196, 436
MluNI TGGCCA 1 cut(s) 1136
MlyI GAGTC 6 cut(s) 86, 134, 202, 497, 547, 1039
MmeI TCCRAC 1 cut(s) 1076
Mox20I TGGCCA 1 cut(s) 1136
MreI CGCCGGCG 1 cut(s) 227
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 1569
MscI TGGCCA 1 cut(s) 1136
MseI TTAA 5 cut(s) 522, 543, 686, 711, 924
MslI CAYNNNNRTG 3 cut(s) 737, 1304, 1523
Msp20I TGGCCA 1 cut(s) 1136
MspI CCGG 7 cut(s) 66, 74, 108, 228, 317, 500, 1076
MspR9I CCNGG 3 cut(s) 74, 317, 1138
Mva1269I GAATGC 3 cut(s) 334, 1378, 1604
MvaI CCWGG 1 cut(s) 1138
MvnI CGCG 1 cut(s) 808
MwoI GCNNNNNNNGC 8 cut(s) 95, 237, 311, 373, 583, 602, 857, 1373
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 2 cut(s) 74, 317
NdeII GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 8 cut(s) 206, 538, 887, 1303, 1364, 1372, 1471, 1528
NlaIV GGNNCC 4 cut(s) 64, 1050, 1065, 1417
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 4 cut(s) 206, 1303, 1364, 1471
PaeI GCATGC 1 cut(s) 1471
PciSI GCTCTTC 2 cut(s) 1383, 1583
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 3 cut(s) 334, 1378, 1604
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 1569
PfeI GAWTC 5 cut(s) 8, 345, 553, 1252, 1636
PfoI TCCNGGA 1 cut(s) 72
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 6 cut(s) 85, 134, 202, 497, 546, 1038
PpsI GAGTC 6 cut(s) 85, 134, 202, 497, 546, 1038
Psp6I CCWGG 1 cut(s) 1136
PspGI CCWGG 1 cut(s) 1136
PspN4I GGNNCC 4 cut(s) 64, 1050, 1065, 1417
PspPI GGNCC 2 cut(s) 365, 1063
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 4 cut(s) 265, 1048, 1160, 1208
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 2 cut(s) 287, 1313
RsaNI GTAC 2 cut(s) 286, 1312
RseI CAYNNNNRTG 3 cut(s) 737, 1304, 1523
SapI GCTCTTC 2 cut(s) 1383, 1583
SaqAI TTAA 5 cut(s) 522, 543, 686, 711, 924
Sau3AI GATC 9 cut(s) 22, 27, 265, 751, 1048, 1160, 1208, 1485, 1552
Sau96I GGNCC 2 cut(s) 365, 1063
SchI GAGTC 6 cut(s) 86, 134, 202, 497, 547, 1039
ScrFI CCNGG 3 cut(s) 74, 317, 1138
SfaNI GCATC 2 cut(s) 838, 1324
SfcI CTRYAG 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 227
SinI GGWCC 1 cut(s) 1063
SmiMI CAYNNNNRTG 3 cut(s) 737, 1304, 1523
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
SphI GCATGC 1 cut(s) 1471
Sse9I AATT 3 cut(s) 84, 196, 436
SsiI CCGC 9 cut(s) 225, 303, 363, 480, 483, 701, 910, 1275, 1364
SspMI CTAG 1 cut(s) 1206
StyD4I CCNGG 3 cut(s) 72, 315, 1136
TaaI ACNGT 4 cut(s) 118, 1063, 1423, 1570
TaqI TCGA 5 cut(s) 30, 45, 338, 716, 1295
TasI AATT 3 cut(s) 84, 196, 436
TatI WGTACW 2 cut(s) 285, 1311
TauI GCSGC 4 cut(s) 483, 703, 912, 1367
TfiI GAWTC 5 cut(s) 8, 345, 553, 1252, 1636
Tru1I TTAA 5 cut(s) 522, 543, 686, 711, 924
Tru9I TTAA 5 cut(s) 522, 543, 686, 711, 924
TscAI CASTG 2 cut(s) 960, 1074
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 4 cut(s) 1071, 1385, 1518, 1578
TspRI CASTG 2 cut(s) 960, 1074
VpaK11BI GGWCC 1 cut(s) 1063
XapI RAATTY 2 cut(s) 196, 436
XceI RCATGY 4 cut(s) 206, 1303, 1364, 1471
XcmI CCANNNNNNNNNTGG 1 cut(s) 1256
XmiI GTMKAC 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 1569
XspI CTAG 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.