Rh2BG115100

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
9743783 .. 9750227
6445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG115100.1

Sequence Viewer

Length: 1674 bp
ATGAGTGAATCGCCATTTGATGATCCGATCGAACCGACTTCCTTCGACCTTATCGTCATCGGAACCGGCCTCCCGGAGTCAGTAATCGCTGCAGCAGCATCTACTTCCGGCAAAACTGTTCTCCAGCTTGACCCTAACGACTCCTACGGCAGCCACTTTGCTTCTCATACACTTGATGACCTCACTTCGTTCGTGAATTCACATGCTACTCCACCTCCCTCCACCGCCGGCGTTACAAGTAGTGAAGGTGATTATACTACATTGGATCTCAATCCCCGTTCGCTGTACTCCCACATTGAGACCGCCAACTATGCCCCGGAAATCCTTGCAGAGCATTCGAGGAGATTCCTTATTGACATTGGCGGGCCGAGGGTGCTGTTCTGTGCTGACAAGGCCATTGAGCTTATATTGAAGTCGGGTGTGGGGTCGTATTTGAATTTCAAGGCTGTTGATGGGAACTTGATTTGGGATGAGAGTAGCGGCGGGTTGTGTAATGTGCCGGACTCAAGAGCAGCGATATTTAAAGATAAGGGCATGCGTCTTAAAGAGAAGAATCAGTTGATGAGGTTCTTCAAGCTTGTTCAGCAGCACTTGGCAGCAGCAGCCTCTGATGGTGAAGAAGATAATTATGAGAGTTCAAAGATTTCTGAGGAGGATTTGGAGACCCCATTTGTTGACTTCTTAACAACACGGCTGCCGCACAAGATTAAATCGATTATCCTTTATTCCATTGCAATGGTTGATTATGATCAAGACAACTCAAAAGTTTGTAAAAGTATACTGAAGACAAGAGATGGGATATCACGTTTAGCTCTCTATCAAAAATCAGTTGGCAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTATCACAAGCCTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTCTTCAAGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTAGTTTCAGGTCAGGATTTGTTGAGTCATCGGCTGGTTATGGATCCAACCTTCACGGTCCCACTGCCACCGGCTTCATCTCCACCAGACCTTCCAAAAGAAAGTCTGAAAGGTGATAAAAGAAAGGTGGCCAGGGGAATATGTATTACAACAAGATCCTTGAAGCCAGATATATCAAACTTATTGCTTGTGTATCCTCCTAGATCTTTGTTTTCTGAGCAGGACACTTCAGTCCGAGCTATCCAGATTCGTGGTGGAACAGATGGTGGCGGTTTGGCTGTTTGTCCATCGAGCATGTTTGTGTTGTACTTTTCTGCTCTATGTGATGATGCTGAACAAGGGAAAAGGTTGCTACATGCGGCCATGAATGCTCTTCTCACACTTCCTGTTTCTGGAAATCTTGAAAGTGGTTCCACAGTTCAAAGTGAAGACGCAGAACTAAAACCCACCTTACTTTGGAGCATGCTATACATTCAGGAGATCATAACGGGTCAATATGAACATCTCATCTCCACTCCCATGCCAGATGGAAATCTCAACTATGATGATCTGCTGGATGAAACTGTTCTGCTCTTCCAGAAGATGTATCCGGACGAGGCATTCTTTCCAGAGACACCTTCCTTGCCCGAGAATCCAGAAGAGGATATTGAAGGGCTTAGTCTTGAAGACTGA

Protein Analysis

557

Amino Acids

61.12

Weight (kDa)

4.88

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 14 - 93 2.5e-08 GDP dissociation inhibitor
GDI PF00996 90 - 353 1e-25 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 1232
Acc36I ACCTGC 1 cut(s) 825
AccI GTMKAC 1 cut(s) 778
AccIII TCCGGA 1 cut(s) 1591
AciI CCGC 9 cut(s) 225, 303, 363, 480, 483, 698, 907, 1272, 1361
AclWI GGATC 5 cut(s) 17, 273, 1040, 1053, 1152
AcoI YGGCCR 2 cut(s) 1131, 1362
AcsI RAATTY 2 cut(s) 196, 436
AcuI CTGAAG 2 cut(s) 803, 1215
AfaI GTAC 2 cut(s) 287, 1310
AfiI CCNNNNNNNGG 3 cut(s) 875, 1394, 1458
AjnI CCWGG 1 cut(s) 1133
AluBI AGCT 6 cut(s) 127, 403, 577, 812, 857, 1241
AluI AGCT 6 cut(s) 127, 403, 577, 812, 857, 1241
Alw26I GTCTC 3 cut(s) 293, 656, 1607
AlwI GGATC 5 cut(s) 17, 273, 1040, 1053, 1152
AlwNI CAGNNNCTG 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 1628
Aor13HI TCCGGA 1 cut(s) 1591
AoxI GGCC 6 cut(s) 67, 365, 393, 947, 1131, 1362
ApoI RAATTY 2 cut(s) 196, 436
Asp700I GAANNNNTTC 1 cut(s) 1566
AspS9I GGNCC 2 cut(s) 365, 1060
AsuC2I CCSGG 2 cut(s) 74, 317
AsuHPI GGTGA 3 cut(s) 260, 626, 1127
AvaI CYCGRG 1 cut(s) 1628
AvaII GGWCC 1 cut(s) 1060
BalI TGGCCA 1 cut(s) 1133
BamHI GGATCC 1 cut(s) 1045
BbsI GAAGAC 3 cut(s) 791, 923, 1437
BccI CCATC 6 cut(s) 446, 605, 788, 1259, 1297, 1523
BceAI ACGGC 3 cut(s) 163, 707, 894
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 1135
BciVI GTATCC 2 cut(s) 1206, 1599
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 2 cut(s) 74, 317
BcoDI GTCTC 3 cut(s) 293, 656, 1607
BfaI CTAG 1 cut(s) 1203
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 825
BfuI GTATCC 2 cut(s) 1206, 1599
BglII AGATCT 1 cut(s) 1205
Bme1390I CCNGG 3 cut(s) 74, 317, 1135
Bme18I GGWCC 1 cut(s) 1060
BmeT110I CYCGRG 1 cut(s) 1628
BmgT120I GGNCC 2 cut(s) 365, 1060
BmiI GGNNCC 4 cut(s) 64, 1047, 1062, 1414
BmrFI CCNGG 3 cut(s) 74, 317, 1135
BmsI GCATC 3 cut(s) 107, 835, 1321
BpiI GAAGAC 3 cut(s) 791, 923, 1437
BpmI CTGGAG 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 490
BpuMI CCSGG 2 cut(s) 74, 317
Bsa29I ATCGAT 1 cut(s) 713
BsaBI GATNNNNATC 3 cut(s) 270, 747, 1533
BsaI GGTCTC 2 cut(s) 293, 656
BsaJI CCNNGG 3 cut(s) 315, 368, 1134
BsaWI WCCGGW 1 cut(s) 1591
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 3 cut(s) 875, 1394, 1458
Bse118I RCCGGY 3 cut(s) 65, 227, 1072
Bse1I ACTGG 1 cut(s) 950
Bse3DI GCAATG 2 cut(s) 729, 741
Bse8I GATNNNNATC 3 cut(s) 270, 747, 1533
BseAI TCCGGA 1 cut(s) 1591
BseBI CCWGG 1 cut(s) 1135
BseCI ATCGAT 1 cut(s) 713
BseDI CCNNGG 3 cut(s) 315, 368, 1134
BseGI GGATG 2 cut(s) 475, 1564
BseJI GATNNNNATC 3 cut(s) 270, 747, 1533
BseLI CCNNNNNNNGG 3 cut(s) 875, 1394, 1458
BseMI GCAATG 2 cut(s) 729, 741
BseMII CTCAG 2 cut(s) 639, 1209
BseNI ACTGG 1 cut(s) 950
BseRI GAGGAG 2 cut(s) 355, 665
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 6 cut(s) 69, 367, 395, 949, 1133, 1364
BshVI ATCGAT 1 cut(s) 713
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 1628
BsiSI CCGG 8 cut(s) 66, 74, 108, 228, 317, 500, 1073, 1592
BslFI GGGAC 1 cut(s) 1046
BslI CCNNNNNNNGG 3 cut(s) 875, 1394, 1458
BsmAI GTCTC 3 cut(s) 293, 656, 1607
BsmFI GGGAC 1 cut(s) 1046
BsmI GAATGC 3 cut(s) 334, 1375, 1601
BsnI GGCC 6 cut(s) 69, 367, 395, 949, 1133, 1364
Bso31I GGTCTC 2 cut(s) 293, 656
BsoBI CYCGRG 1 cut(s) 1628
Bsp13I TCCGGA 1 cut(s) 1591
Bsp143I GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
BspACI CCGC 9 cut(s) 225, 303, 363, 480, 483, 698, 907, 1272, 1361
BspANI GGCC 6 cut(s) 69, 367, 395, 949, 1133, 1364
BspCNI CTCAG 2 cut(s) 640, 1210
BspDI ATCGAT 1 cut(s) 713
BspEI TCCGGA 1 cut(s) 1591
BspLI GGNNCC 4 cut(s) 64, 1047, 1062, 1414
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 825
BspPI GGATC 5 cut(s) 17, 273, 1040, 1053, 1152
BspQI GCTCTTC 2 cut(s) 1380, 1580
BspTNI GGTCTC 2 cut(s) 293, 656
BsrDI GCAATG 2 cut(s) 729, 741
BsrFI RCCGGY 3 cut(s) 65, 227, 1072
BsrI ACTGG 1 cut(s) 950
BssAI RCCGGY 3 cut(s) 65, 227, 1072
BssECI CCNNGG 3 cut(s) 315, 368, 1134
BssMI GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
BssNAI GTATAC 1 cut(s) 779
Bst1107I GTATAC 1 cut(s) 779
Bst2UI CCWGG 1 cut(s) 1135
Bst4CI ACNGT 4 cut(s) 118, 1060, 1420, 1567
Bst6I CTCTTC 3 cut(s) 1380, 1580, 1635
BstC8I GCNNGC 4 cut(s) 229, 365, 536, 1466
BstDEI CTNAG 3 cut(s) 648, 1218, 1658
BstF5I GGATG 2 cut(s) 475, 1564
BstKTI GATC 9 cut(s) 25, 30, 268, 751, 1048, 1160, 1208, 1485, 1552
BstMAI GTCTC 3 cut(s) 293, 656, 1607
BstMBI GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 8 cut(s) 95, 311, 373, 392, 583, 602, 854, 1370
BstNI CCWGG 1 cut(s) 1135
BstNSI RCATGY 5 cut(s) 206, 538, 1300, 1361, 1468
BstSCI CCNGG 3 cut(s) 72, 315, 1133
BstSFI CTRYAG 1 cut(s) 90
BstV2I GAAGAC 3 cut(s) 791, 923, 1437
BstX2I RGATCY 4 cut(s) 265, 1045, 1157, 1205
BstXI CCANNNNNNTGG 2 cut(s) 736, 1253
BstYI RGATCY 4 cut(s) 265, 1045, 1157, 1205
BstZ17I GTATAC 1 cut(s) 779
Bsu15I ATCGAT 1 cut(s) 713
BsuI GTATCC 2 cut(s) 1206, 1599
BsuRI GGCC 6 cut(s) 69, 367, 395, 949, 1133, 1364
BsuTUI ATCGAT 1 cut(s) 713
BtsCI GGATG 2 cut(s) 475, 1564
BtsI GCAGTG 1 cut(s) 1064
BtsIMutI CAGTG 2 cut(s) 957, 1064
BveI ACCTGC 1 cut(s) 825
Cac8I GCNNGC 4 cut(s) 229, 365, 536, 1466
CaiI CAGNNNCTG 1 cut(s) 608
Cfr10I RCCGGY 3 cut(s) 65, 227, 1072
Cfr13I GGNCC 2 cut(s) 365, 1060
ClaI ATCGAT 1 cut(s) 713
CseI GACGC 2 cut(s) 527, 1442
Csp6I GTAC 2 cut(s) 286, 1309
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 8 cut(s) 203, 535, 881, 1297, 1358, 1366, 1465, 1522
CviQI GTAC 2 cut(s) 286, 1309
DdeI CTNAG 3 cut(s) 648, 1218, 1658
DpnI GATC 9 cut(s) 24, 29, 267, 750, 1047, 1159, 1207, 1484, 1551
DpnII GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
DraI TTTAAA 1 cut(s) 523
DrdI GACNNNNNNGTC 2 cut(s) 53, 1232
DseDI GACNNNNNNGTC 2 cut(s) 53, 1232
EaeI YGGCCR 2 cut(s) 1131, 1362
Eam1104I CTCTTC 3 cut(s) 1380, 1580, 1635
EarI CTCTTC 3 cut(s) 1380, 1580, 1635
Eco31I GGTCTC 2 cut(s) 293, 656
Eco32I GATATC 1 cut(s) 801
Eco47I GGWCC 1 cut(s) 1060
Eco57I CTGAAG 2 cut(s) 803, 1215
Eco88I CYCGRG 1 cut(s) 1628
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 1133
EcoRV GATATC 1 cut(s) 801
FaeI CATG 8 cut(s) 206, 538, 884, 1300, 1361, 1369, 1468, 1525
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 1 cut(s) 1046
FatI CATG 8 cut(s) 202, 534, 880, 1296, 1357, 1365, 1464, 1521
FauI CCCGC 2 cut(s) 356, 476
FbaI TGATCA 1 cut(s) 748
FblI GTMKAC 1 cut(s) 778
FokI GGATG 2 cut(s) 482, 1571
FspBI CTAG 1 cut(s) 1203
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 6 cut(s) 69, 367, 395, 949, 1133, 1364
HapII CCGG 8 cut(s) 66, 74, 108, 228, 317, 500, 1073, 1592
HgaI GACGC 2 cut(s) 527, 1442
Hin1II CATG 8 cut(s) 206, 538, 884, 1300, 1361, 1369, 1468, 1525
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 9 cut(s) 8, 77, 140, 345, 503, 553, 1027, 1249, 1633
HpaII CCGG 8 cut(s) 66, 74, 108, 228, 317, 500, 1073, 1592
HphI GGTGA 3 cut(s) 260, 626, 1127
Hpy166II GTNNAC 2 cut(s) 676, 779
Hpy188I TCNGA 7 cut(s) 27, 62, 610, 649, 1110, 1219, 1238
Hpy8I GTNNAC 2 cut(s) 676, 779
HpyAV CCTTC 7 cut(s) 52, 239, 939, 1063, 1103, 1629, 1646
HpyCH4III ACNGT 4 cut(s) 118, 1060, 1420, 1567
HpyCH4IV ACGT 1 cut(s) 805
HpyCH4V TGCA 3 cut(s) 92, 329, 734
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 311, 373, 392, 583, 602, 854, 1370
HpyF3I CTNAG 3 cut(s) 648, 1218, 1658
HpySE526I ACGT 1 cut(s) 805
Hsp92II CATG 8 cut(s) 206, 538, 884, 1300, 1361, 1369, 1468, 1525
Kpn2I TCCGGA 1 cut(s) 1591
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
LguI GCTCTTC 2 cut(s) 1380, 1580
LmnI GCTCC 2 cut(s) 854, 1461
LweI GCATC 3 cut(s) 107, 835, 1321
MaeI CTAG 1 cut(s) 1203
MaeII ACGT 1 cut(s) 805
MaeIII GTNAC 1 cut(s) 232
MalI GATC 9 cut(s) 24, 29, 267, 750, 1047, 1159, 1207, 1484, 1551
MboI GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
MflI RGATCY 4 cut(s) 265, 1045, 1157, 1205
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 3 cut(s) 196, 436, 625
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 4 cut(s) 86, 134, 497, 1036
MmeI TCCRAC 1 cut(s) 1073
Mox20I TGGCCA 1 cut(s) 1133
MreI CGCCGGCG 1 cut(s) 227
MroI TCCGGA 1 cut(s) 1591
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 1566
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 5 cut(s) 522, 543, 683, 708, 921
MslI CAYNNNNRTG 3 cut(s) 734, 1301, 1520
Msp20I TGGCCA 1 cut(s) 1133
MspI CCGG 8 cut(s) 66, 74, 108, 228, 317, 500, 1073, 1592
MspR9I CCNGG 3 cut(s) 74, 317, 1135
Mva1269I GAATGC 3 cut(s) 334, 1375, 1601
MvaI CCWGG 1 cut(s) 1135
MwoI GCNNNNNNNGC 8 cut(s) 95, 311, 373, 392, 583, 602, 854, 1370
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 2 cut(s) 74, 317
NdeII GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 8 cut(s) 206, 538, 884, 1300, 1361, 1369, 1468, 1525
NlaIV GGNNCC 4 cut(s) 64, 1047, 1062, 1414
NmeAIII GCCGAG 1 cut(s) 393
NspI RCATGY 5 cut(s) 206, 538, 1300, 1361, 1468
PaeI GCATGC 2 cut(s) 538, 1468
PciSI GCTCTTC 2 cut(s) 1380, 1580
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 3 cut(s) 334, 1375, 1601
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 1566
PfeI GAWTC 5 cut(s) 8, 345, 553, 1249, 1633
PfoI TCCNGGA 1 cut(s) 72
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 4 cut(s) 85, 134, 497, 1035
PpsI GAGTC 4 cut(s) 85, 134, 497, 1035
Psp6I CCWGG 1 cut(s) 1133
PspGI CCWGG 1 cut(s) 1133
PspN4I GGNNCC 4 cut(s) 64, 1047, 1062, 1414
PspPI GGNCC 2 cut(s) 365, 1060
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 4 cut(s) 265, 1045, 1157, 1205
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 2 cut(s) 287, 1310
RsaNI GTAC 2 cut(s) 286, 1309
RseI CAYNNNNRTG 3 cut(s) 734, 1301, 1520
SapI GCTCTTC 2 cut(s) 1380, 1580
SaqAI TTAA 5 cut(s) 522, 543, 683, 708, 921
Sau3AI GATC 9 cut(s) 22, 27, 265, 748, 1045, 1157, 1205, 1482, 1549
Sau96I GGNCC 2 cut(s) 365, 1060
SchI GAGTC 4 cut(s) 86, 134, 497, 1036
ScrFI CCNGG 3 cut(s) 74, 317, 1135
SfaNI GCATC 3 cut(s) 107, 835, 1321
SfcI CTRYAG 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 227
SinI GGWCC 1 cut(s) 1060
SmiMI CAYNNNNRTG 3 cut(s) 734, 1301, 1520
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
SphI GCATGC 2 cut(s) 538, 1468
Sse9I AATT 3 cut(s) 196, 436, 625
SsiI CCGC 9 cut(s) 225, 303, 363, 480, 483, 698, 907, 1272, 1361
SspMI CTAG 1 cut(s) 1203
StyD4I CCNGG 3 cut(s) 72, 315, 1133
TaaI ACNGT 4 cut(s) 118, 1060, 1420, 1567
TaiI ACGT 1 cut(s) 808
TaqI TCGA 5 cut(s) 30, 45, 338, 713, 1292
TasI AATT 3 cut(s) 196, 436, 625
TatI WGTACW 2 cut(s) 285, 1308
TauI GCSGC 4 cut(s) 483, 700, 909, 1364
TfiI GAWTC 5 cut(s) 8, 345, 553, 1249, 1633
Tru1I TTAA 5 cut(s) 522, 543, 683, 708, 921
Tru9I TTAA 5 cut(s) 522, 543, 683, 708, 921
TscAI CASTG 2 cut(s) 957, 1071
TspDTI ATGAA 4 cut(s) 1068, 1382, 1515, 1575
TspRI CASTG 2 cut(s) 957, 1071
VpaK11BI GGWCC 1 cut(s) 1060
XapI RAATTY 2 cut(s) 196, 436
XceI RCATGY 5 cut(s) 206, 538, 1300, 1361, 1468
XcmI CCANNNNNNNNNTGG 1 cut(s) 1253
XmiI GTMKAC 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 1566
XspI CTAG 1 cut(s) 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.