RLG00000016716

Rab proteins geranylgeranyltransferase component

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
9361062 .. 9366956
5895 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016716

Sequence Viewer

Length: 1842 bp
ATGGATGTGATTATGAACAGGACCGTTATACAACAACCGGGTCTCACCGGTTCTTTCTCCCGAGTCTACCTGATCTGGACTCTACGAGACTCCCTCCCCGTGAAACGAAACCACTGCACAATTTTCCGACCAACCGAAACTTCTCTCCGTCCTGCAAGTTTCGTTACGATCGCTGCAATGAGTGAATCGCCATTTGATGATCCGATCGAACCGACTTCCTTCGACCTTATCGTCATCGGAACCGGCCTCCCGGAGTCAGTAATCGCTGCAGCAGCATCTACTTCCGGCAAAACTGTTCTCCAGCTTGACCCTAACGACTCCTACGGCAGCCACTTTGCCTCTCACACACTTGATGACCTCACTTCCTTCCTGAATTCACATGCTACTCCACCTCCCTCCGCCGCCAGCGTTACAAGTAGTGATAGTGATTATACTACATTGGATCTCAATCCCCGTTCGCTGTACTCCCACATTGAGACTGCCAACTATGCCCCGGAAATCCTTGCAGAACATTCGAGGAGATTCCTTATTGACATTGGTGGGCCGAGGGTGCTGTTCTGTGCTGACAAGGCCATTGAGCTTATATTGAAGTCGGGTGTGGGGTCGTATTTGAATTTCAAGGCTGTTGATGGGAACTTGATTTGGGATGAGAGTAGCGGCGGGTTGTGTAATGTGCCGGACTCAAGAGCAGCGATATTTAAAGACAAGGGCATGAGTCTTAAAGAGAAGAATCAGTTGATGAGGTTCTTCAAGCTTGTTCAGCAGCACTTGGCAGCAGCCTCTGATGGTGAAGATAATGAGAGTTCACAGATTTCTGAGGAGGATTTGGAGACCCCATTTGTTGACTTCTTAACAACACGGCTGCCGCACAAGATAAAATCGATTATCCTTTATTCCATTGCAATGGTTGATTATGATCAAGACAACTCAAAAGTTTGTAAAAGTATACTGAAGACAAGAGATGGGATATCGCGTTTAGCTCTCTATCAAAAATCAGTTGGCAGGTTTCCAGATGCCAATGGAGCTTTTCTTTTTCCTATGTATGGTCATGGGGAGTTATCACAAGCCTTTTGCCGCCGTGCTGCTGTTAAAGGTTGTCTTCAAGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTAGTTTCAGGTCAGGATTTGTTGAGTCATCGGCTGGTTATGGATCCAACCTTCACGGTCCCACTGCCACCAGCTTCATCTCCACCAGACCTTCCAAAAGAAAGTCTGAAAGGTGATAAAAGAAAGGTGGCCAGGGGAATATGTATTACAACAAGATCCTTGAAGCCAGATATATCAAACTTATTGCTTGTGTATCCTCCTAGATCTTTGTTTTCTGAGCAGGACACTTCAGTCCGAGCTATCCAGATTCGTGGTGGAACAGATGGTGGCGGTTTGGCTGTTTGTCCATCGAGCATGTTTGTGTTGTACTTTTCTGCTTTATGTGATGATGCTGAACAAGGGAAAAGGTTGCTACATGCGGCCATGAATGCTCTTCTCACACTTCCTGTTTCTGGAAATCTTGAAAGTGGTTCCACAGTTCAAAGTGAAGACGCAGAACTAAAACCCACCTTACTTTGGAGCATGCTATACATTCAGGAGATCACAATGGGTCAATATGAACATCTCATCTCCACTCCCATGCCAGATGGAAATCTCAACTATGATGATCTGCTGGATGAAACTGTTCTGCTCTTCCAGAAGATGTATCCAGACGAGGCATTCTTTCCAGAGACACCTTCCTTGCCCGAGAATCCGGAAGAGGATATTGAAGGGCTTAGTCTTGAAGACTGA

Protein Analysis

614

Amino Acids

67.4

Weight (kDa)

5.03

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDI PF00996 73 - 154 1.8e-08 GDP dissociation inhibitor
GDI PF00996 149 - 409 1.6e-25 GDP dissociation inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 230, 1400
Acc36I ACCTGC 1 cut(s) 993
AccI GTMKAC 2 cut(s) 66, 946
AccII CGCG 1 cut(s) 973
AccIII TCCGGA 1 cut(s) 1804
AciI CCGC 8 cut(s) 399, 402, 657, 660, 866, 1075, 1440, 1529
AclWI GGATC 5 cut(s) 194, 450, 1208, 1221, 1320
AcoI YGGCCR 2 cut(s) 1299, 1530
AcsI RAATTY 2 cut(s) 373, 613
AcuI CTGAAG 2 cut(s) 971, 1383
AfaI GTAC 2 cut(s) 464, 1478
AfiI CCNNNNNNNGG 3 cut(s) 1043, 1562, 1626
AgeI ACCGGT 1 cut(s) 47
AjnI CCWGG 1 cut(s) 1301
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 7 cut(s) 304, 580, 754, 980, 1025, 1244, 1409
AluI AGCT 7 cut(s) 304, 580, 754, 980, 1025, 1244, 1409
Alw26I GTCTC 5 cut(s) 47, 81, 470, 824, 1775
AlwI GGATC 5 cut(s) 194, 450, 1208, 1221, 1320
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 2 cut(s) 60, 1796
Aor13HI TCCGGA 1 cut(s) 1804
AoxI GGCC 6 cut(s) 244, 542, 570, 1115, 1299, 1530
ApoI RAATTY 2 cut(s) 373, 613
AsiGI ACCGGT 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 1734
AspS9I GGNCC 3 cut(s) 21, 542, 1228
AsuC2I CCSGG 3 cut(s) 39, 251, 494
AsuHPI GGTGA 3 cut(s) 37, 800, 1295
AvaI CYCGRG 2 cut(s) 60, 1796
AvaII GGWCC 2 cut(s) 21, 1228
BalI TGGCCA 1 cut(s) 1301
BamHI GGATCC 1 cut(s) 1213
BbsI GAAGAC 3 cut(s) 959, 1091, 1605
BccI CCATC 6 cut(s) 623, 779, 956, 1427, 1465, 1691
BceAI ACGGC 3 cut(s) 340, 875, 1062
BcgI CGANNNNNNTGC 4 cut(s) 96, 130, 495, 529
BciT130I CCWGG 1 cut(s) 1303
BciVI GTATCC 2 cut(s) 1374, 1767
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 3 cut(s) 39, 251, 494
BcoDI GTCTC 5 cut(s) 47, 81, 470, 824, 1775
BfaI CTAG 1 cut(s) 1371
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 993
BfuI GTATCC 2 cut(s) 1374, 1767
BglII AGATCT 1 cut(s) 1373
Bme1390I CCNGG 4 cut(s) 39, 251, 494, 1303
Bme18I GGWCC 2 cut(s) 21, 1228
BmeT110I CYCGRG 2 cut(s) 60, 1796
BmgT120I GGNCC 3 cut(s) 21, 542, 1228
BmiI GGNNCC 4 cut(s) 241, 1215, 1230, 1582
BmrFI CCNGG 4 cut(s) 39, 251, 494, 1303
BmsI GCATC 3 cut(s) 284, 1003, 1489
BpiI GAAGAC 3 cut(s) 959, 1091, 1605
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 3 cut(s) 39, 251, 494
Bsa29I ATCGAT 1 cut(s) 881
BsaBI GATNNNNATC 3 cut(s) 447, 915, 1701
BsaI GGTCTC 2 cut(s) 47, 824
BsaJI CCNNGG 3 cut(s) 492, 545, 1302
BsaWI WCCGGW 2 cut(s) 47, 1804
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 1043, 1562, 1626
Bse118I RCCGGY 2 cut(s) 47, 242
Bse1I ACTGG 1 cut(s) 1118
Bse3DI GCAATG 3 cut(s) 183, 897, 909
Bse8I GATNNNNATC 3 cut(s) 447, 915, 1701
BseAI TCCGGA 1 cut(s) 1804
BseBI CCWGG 1 cut(s) 1303
BseCI ATCGAT 1 cut(s) 881
BseDI CCNNGG 3 cut(s) 492, 545, 1302
BseGI GGATG 3 cut(s) 10, 652, 1732
BseJI GATNNNNATC 3 cut(s) 447, 915, 1701
BseLI CCNNNNNNNGG 3 cut(s) 1043, 1562, 1626
BseMI GCAATG 3 cut(s) 183, 897, 909
BseMII CTCAG 2 cut(s) 807, 1377
BseNI ACTGG 1 cut(s) 1118
BseRI GAGGAG 2 cut(s) 532, 833
BsgI GTGCAG 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 973
Bsh1285I CGRYCG 2 cut(s) 171, 207
BshFI GGCC 6 cut(s) 246, 544, 572, 1117, 1301, 1532
BshTI ACCGGT 1 cut(s) 47
BshVI ATCGAT 1 cut(s) 881
BsiEI CGRYCG 2 cut(s) 171, 207
BsiHKCI CYCGRG 2 cut(s) 60, 1796
BsiSI CCGG 8 cut(s) 38, 48, 243, 251, 285, 494, 677, 1805
BslFI GGGAC 1 cut(s) 1214
BslI CCNNNNNNNGG 3 cut(s) 1043, 1562, 1626
BsmAI GTCTC 5 cut(s) 47, 81, 470, 824, 1775
BsmFI GGGAC 1 cut(s) 1214
BsmI GAATGC 2 cut(s) 1543, 1769
BsnI GGCC 6 cut(s) 246, 544, 572, 1117, 1301, 1532
Bso31I GGTCTC 2 cut(s) 47, 824
BsoBI CYCGRG 2 cut(s) 60, 1796
Bsp13I TCCGGA 1 cut(s) 1804
BspACI CCGC 8 cut(s) 399, 402, 657, 660, 866, 1075, 1440, 1529
BspANI GGCC 6 cut(s) 246, 544, 572, 1117, 1301, 1532
BspCNI CTCAG 2 cut(s) 808, 1378
BspDI ATCGAT 1 cut(s) 881
BspEI TCCGGA 1 cut(s) 1804
BspFNI CGCG 1 cut(s) 973
BspLI GGNNCC 4 cut(s) 241, 1215, 1230, 1582
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 993
BspPI GGATC 5 cut(s) 194, 450, 1208, 1221, 1320
BspQI GCTCTTC 2 cut(s) 1548, 1748
BspTNI GGTCTC 2 cut(s) 47, 824
BsrDI GCAATG 3 cut(s) 183, 897, 909
BsrFI RCCGGY 2 cut(s) 47, 242
BsrI ACTGG 1 cut(s) 1118
BssAI RCCGGY 2 cut(s) 47, 242
BssECI CCNNGG 3 cut(s) 492, 545, 1302
BssNAI GTATAC 1 cut(s) 947
Bst1107I GTATAC 1 cut(s) 947
Bst2UI CCWGG 1 cut(s) 1303
Bst4CI ACNGT 5 cut(s) 25, 295, 1228, 1588, 1735
Bst6I CTCTTC 3 cut(s) 1548, 1748, 1803
BstC8I GCNNGC 2 cut(s) 406, 1634
BstDEI CTNAG 3 cut(s) 816, 1386, 1826
BstF5I GGATG 3 cut(s) 10, 652, 1732
BstFNI CGCG 1 cut(s) 973
BstMAI GTCTC 5 cut(s) 47, 81, 470, 824, 1775
BstMCI CGRYCG 2 cut(s) 171, 207
BstMWI GCNNNNNNNGC 7 cut(s) 272, 488, 550, 569, 760, 1022, 1538
BstNI CCWGG 1 cut(s) 1303
BstNSI RCATGY 4 cut(s) 383, 1468, 1529, 1636
BstSCI CCNGG 4 cut(s) 37, 249, 492, 1301
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 973
BstV2I GAAGAC 3 cut(s) 959, 1091, 1605
BstX2I RGATCY 4 cut(s) 442, 1213, 1325, 1373
BstXI CCANNNNNNTGG 2 cut(s) 904, 1421
BstYI RGATCY 4 cut(s) 442, 1213, 1325, 1373
BstZ17I GTATAC 1 cut(s) 947
Bsu15I ATCGAT 1 cut(s) 881
BsuI GTATCC 2 cut(s) 1374, 1767
BsuRI GGCC 6 cut(s) 246, 544, 572, 1117, 1301, 1532
BsuTUI ATCGAT 1 cut(s) 881
BtsCI GGATG 3 cut(s) 10, 652, 1732
BtsI GCAGTG 2 cut(s) 112, 1232
BtsIMutI CAGTG 3 cut(s) 112, 1125, 1232
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 2 cut(s) 406, 1634
CaiI CAGNNNCTG 1 cut(s) 782
Cfr10I RCCGGY 2 cut(s) 47, 242
Cfr13I GGNCC 3 cut(s) 21, 542, 1228
ClaI ATCGAT 1 cut(s) 881
CseI GACGC 1 cut(s) 1610
Csp6I GTAC 2 cut(s) 463, 1477
CspAI ACCGGT 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 1129, 1164
CviAII CATG 8 cut(s) 380, 712, 1049, 1465, 1526, 1534, 1633, 1690
CviQI GTAC 2 cut(s) 463, 1477
DdeI CTNAG 3 cut(s) 816, 1386, 1826
DraI TTTAAA 1 cut(s) 700
DrdI GACNNNNNNGTC 2 cut(s) 230, 1400
DseDI GACNNNNNNGTC 2 cut(s) 230, 1400
EaeI YGGCCR 2 cut(s) 1299, 1530
Eam1104I CTCTTC 3 cut(s) 1548, 1748, 1803
EarI CTCTTC 3 cut(s) 1548, 1748, 1803
EciI GGCGGA 1 cut(s) 388
Eco31I GGTCTC 2 cut(s) 47, 824
Eco32I GATATC 1 cut(s) 969
Eco47I GGWCC 2 cut(s) 21, 1228
Eco57I CTGAAG 2 cut(s) 971, 1383
Eco88I CYCGRG 2 cut(s) 60, 1796
EcoRI GAATTC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 1301
EcoRV GATATC 1 cut(s) 969
FaeI CATG 8 cut(s) 383, 715, 1052, 1468, 1529, 1537, 1636, 1693
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 1 cut(s) 1214
FatI CATG 8 cut(s) 379, 711, 1048, 1464, 1525, 1533, 1632, 1689
FauI CCCGC 1 cut(s) 653
FbaI TGATCA 1 cut(s) 916
FblI GTMKAC 2 cut(s) 66, 946
FokI GGATG 3 cut(s) 17, 659, 1739
FspBI CTAG 1 cut(s) 1371
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 6 cut(s) 246, 544, 572, 1117, 1301, 1532
HapII CCGG 8 cut(s) 38, 48, 243, 251, 285, 494, 677, 1805
HgaI GACGC 1 cut(s) 1610
Hin1II CATG 8 cut(s) 383, 715, 1052, 1468, 1529, 1537, 1636, 1693
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HindIII AAGCTT 1 cut(s) 752
HpaII CCGG 8 cut(s) 38, 48, 243, 251, 285, 494, 677, 1805
HphI GGTGA 3 cut(s) 37, 800, 1295
Hpy166II GTNNAC 4 cut(s) 67, 806, 844, 947
Hpy188I TCNGA 8 cut(s) 128, 204, 239, 784, 817, 1278, 1387, 1406
Hpy8I GTNNAC 4 cut(s) 67, 806, 844, 947
HpyAV CCTTC 7 cut(s) 229, 376, 1107, 1231, 1271, 1797, 1814
HpyCH4III ACNGT 5 cut(s) 25, 295, 1228, 1588, 1735
HpyCH4V TGCA 6 cut(s) 117, 155, 176, 269, 506, 902
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 488, 550, 569, 760, 1022, 1538
HpyF3I CTNAG 3 cut(s) 816, 1386, 1826
Hsp92II CATG 8 cut(s) 383, 715, 1052, 1468, 1529, 1537, 1636, 1693
Kpn2I TCCGGA 1 cut(s) 1804
Ksp22I TGATCA 1 cut(s) 916
LguI GCTCTTC 2 cut(s) 1548, 1748
LmnI GCTCC 2 cut(s) 1022, 1629
LweI GCATC 3 cut(s) 284, 1003, 1489
MaeI CTAG 1 cut(s) 1371
MaeIII GTNAC 2 cut(s) 163, 409
MflI RGATCY 4 cut(s) 442, 1213, 1325, 1373
MlsI TGGCCA 1 cut(s) 1301
MluCI AATT 3 cut(s) 120, 373, 613
MluNI TGGCCA 1 cut(s) 1301
MlyI GAGTC 8 cut(s) 72, 73, 83, 263, 311, 674, 724, 1204
MmeI TCCRAC 2 cut(s) 151, 1241
Mox20I TGGCCA 1 cut(s) 1301
MroI TCCGGA 1 cut(s) 1804
MroXI GAANNNNTTC 1 cut(s) 1734
MscI TGGCCA 1 cut(s) 1301
MseI TTAA 4 cut(s) 699, 720, 851, 1089
MslI CAYNNNNRTG 3 cut(s) 902, 1469, 1688
Msp20I TGGCCA 1 cut(s) 1301
MspI CCGG 8 cut(s) 38, 48, 243, 251, 285, 494, 677, 1805
MspR9I CCNGG 4 cut(s) 39, 251, 494, 1303
Mva1269I GAATGC 2 cut(s) 1543, 1769
MvaI CCWGG 1 cut(s) 1303
MvnI CGCG 1 cut(s) 973
MwoI GCNNNNNNNGC 7 cut(s) 272, 488, 550, 569, 760, 1022, 1538
NciI CCSGG 3 cut(s) 39, 251, 494
NlaIII CATG 8 cut(s) 383, 715, 1052, 1468, 1529, 1537, 1636, 1693
NlaIV GGNNCC 4 cut(s) 241, 1215, 1230, 1582
NmeAIII GCCGAG 1 cut(s) 570
NspI RCATGY 4 cut(s) 383, 1468, 1529, 1636
PaeI GCATGC 1 cut(s) 1636
PciSI GCTCTTC 2 cut(s) 1548, 1748
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 2 cut(s) 1543, 1769
PdmI GAANNNNTTC 1 cut(s) 1734
PfeI GAWTC 5 cut(s) 185, 522, 730, 1417, 1801
PfoI TCCNGGA 1 cut(s) 249
PinAI ACCGGT 1 cut(s) 47
Ple19I CGATCG 2 cut(s) 171, 207
PleI GAGTC 8 cut(s) 71, 73, 83, 262, 311, 674, 723, 1203
PpsI GAGTC 8 cut(s) 71, 73, 83, 262, 311, 674, 723, 1203
Psp6I CCWGG 1 cut(s) 1301
PspGI CCWGG 1 cut(s) 1301
PspN4I GGNNCC 4 cut(s) 241, 1215, 1230, 1582
PspPI GGNCC 3 cut(s) 21, 542, 1228
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 4 cut(s) 442, 1213, 1325, 1373
PvuI CGATCG 2 cut(s) 171, 207
RsaI GTAC 2 cut(s) 464, 1478
RsaNI GTAC 2 cut(s) 463, 1477
RseI CAYNNNNRTG 3 cut(s) 902, 1469, 1688
SapI GCTCTTC 2 cut(s) 1548, 1748
SaqAI TTAA 4 cut(s) 699, 720, 851, 1089
Sau96I GGNCC 3 cut(s) 21, 542, 1228
SchI GAGTC 8 cut(s) 72, 73, 83, 263, 311, 674, 724, 1204
ScrFI CCNGG 4 cut(s) 39, 251, 494, 1303
SfaNI GCATC 3 cut(s) 284, 1003, 1489
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 21, 1228
SmiMI CAYNNNNRTG 3 cut(s) 902, 1469, 1688
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
SphI GCATGC 1 cut(s) 1636
Sse9I AATT 3 cut(s) 120, 373, 613
SsiI CCGC 8 cut(s) 399, 402, 657, 660, 866, 1075, 1440, 1529
SspMI CTAG 1 cut(s) 1371
StyD4I CCNGG 4 cut(s) 37, 249, 492, 1301
TaaI ACNGT 5 cut(s) 25, 295, 1228, 1588, 1735
TaqI TCGA 5 cut(s) 207, 222, 515, 881, 1460
TasI AATT 3 cut(s) 120, 373, 613
TatI WGTACW 2 cut(s) 462, 1476
TauI GCSGC 5 cut(s) 404, 660, 868, 1077, 1532
TfiI GAWTC 5 cut(s) 185, 522, 730, 1417, 1801
Tru1I TTAA 4 cut(s) 699, 720, 851, 1089
Tru9I TTAA 4 cut(s) 699, 720, 851, 1089
TscAI CASTG 3 cut(s) 119, 1125, 1239
TspDTI ATGAA 5 cut(s) 29, 1236, 1550, 1683, 1743
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 3 cut(s) 119, 1125, 1239
VpaK11BI GGWCC 2 cut(s) 21, 1228
XapI RAATTY 2 cut(s) 373, 613
XceI RCATGY 4 cut(s) 383, 1468, 1529, 1636
XcmI CCANNNNNNNNNTGG 1 cut(s) 1421
XmiI GTMKAC 2 cut(s) 66, 946
XmnI GAANNNNTTC 1 cut(s) 1734
XspI CTAG 1 cut(s) 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.