Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009113

Physical Location & Seq

Genomic Coordinates Forward (+)

2167730 .. 2169222

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06868.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTGGAGCTCAAAGATCAACAAGACATGGGAGAAGGTATGCAATGCATTACACATCCTTACACAAAGAACCCAGGTGGGATCTGTGCTTTATGTCTCCAGGAAAAGCTTGGTAAGCTCGTCACTTCCTCTTTCCCTGTTCCTAAACCCAACCATCTCTCTTCTTCTTCTCCTAAATCCTTCACTCCTTCCACGACCTCTCTCGCTCTGTCTCTCTCATCGGCAAGCAATGGCAGAGACTCCACTAACAACAACAATCTCCCGTTTCTTCTGGCTAAGAAGAAGAAGAACATGCTCGCAGCTTCTTCTTCATCTTCTTCTTCTTCCTCTTCGTCTTCTTCTGCGAATCTTATCTACAAGAGAAGCAAATCGACTGCTGCTGCTTACGGTGAGAGTTTCAGCCAAAGGAAACGAAGTGGGTTTTGGTCTTTTTTCCATCTCTACTCTTCAAAACATCAGATCAGCAACACCACCAAAAAAGTCGATAACTTTAGCCATTTAAGGAGGAACCAGAGAACAGAGTCAAAAACAGAGACTTCTTCCATGAGGGTCGGTGGTGGTGGAGGCATTGATGTGATAGTTGAGGAAGAAGATGAGAGTCCTAACAAAGTGGTTTCAGAAACGCCAACGAATGGTATAGGTGGTGGTGGTGGTTCGTCGTTTGGGAGGAAAGTGTTGAGATCTAGATCTGTTGGTTGTGGTAGTAGAAGCTTCTCTGGTGATTTCTTTGAGAGGATCTCTAATGGGTTTGGTGATTGTGCCTTGAGAAGGATTGAGTCACAGAGAGAAGCCACTAAGGTCATTAGTAATGGTGGTGGTGGTGAAGCAGCAGATGCAATGAGTGAAATGGTCAAATGTGGTGGCATCTTTGGTGGGTTTATGATCATGACATCATCATCTACAACATCATCAACAACATCATCAACGGTTGATCATCATCATAATCATAAGATGGGGAACAGAAACTGGGGATGGGCTTTCGCAAGTCCAATGAGAGCCAAAGCTACTGCTACTCATAGAGGTCGTACCATTACAGAGTCCACAGCTGACAACAAGAACACATCTTCAAATTTGGACTCAATCCCTTCATTGTTGGCTTTGAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

39.37

Weight (kDa)

9.71

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06868 AT5G49100
fragaria_vesca	FvH4_4g18460
malus_domestica	MD13G1166900.v1.1 MD16G1166700.v1.1
prunus_persica	Prupe.1G133400_v2.0.a1
pyrus_communis	pycom13g14260 pycom16g14070
rosa_chinensis	RchiOBHm_Chr4g0422951
rosa_laevigata	RLG00000007594
rosa_multiflora	Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365070
rosa_rugosa	Rorug04G0182600
rosa_samantha	Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000
rosa_wichuraiana	Rw4G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	632
AclWI	GGATC	2 cut(s)	89, 743
AcsI	RAATTY	1 cut(s)	1069
AfaI	GTAC	1 cut(s)	1027
AfiI	CCNNNNNNNGG	2 cut(s)	632, 768
AgsI	TTSAA	3 cut(s)	450, 1068, 1102
AjnI	CCWGG	2 cut(s)	73, 99
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	8 cut(s)	10, 109, 118, 302, 711, 1004, 1046, 1107
AluI	AGCT	8 cut(s)	10, 109, 118, 302, 711, 1004, 1046, 1107
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	4 cut(s)	101, 216, 231, 527
AlwI	GGATC	2 cut(s)	89, 743
AlwNI	CAGNNNCTG	1 cut(s)	966
ApeKI	GCWGC	4 cut(s)	299, 377, 380, 827
ApoI	RAATTY	1 cut(s)	1069
AsuHPI	GGTGA	4 cut(s)	401, 731, 764, 833
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	311, 364, 367, 839
BccI	CCATC	4 cut(s)	162, 444, 946, 966
BciT130I	CCWGG	2 cut(s)	75, 101
BclI	TGATCA	2 cut(s)	882, 931
BcoDI	GTCTC	4 cut(s)	101, 216, 231, 527
BfaI	CTAG	1 cut(s)	684
BglII	AGATCT	2 cut(s)	680, 686
BisI	GCNGC	4 cut(s)	300, 378, 381, 828
BlsI	GCNGC	4 cut(s)	301, 379, 382, 829
Bme1390I	CCNGG	2 cut(s)	75, 101
BmiI	GGNNCC	1 cut(s)	509
BmrFI	CCNGG	2 cut(s)	75, 101
BmrI	ACTGGG	1 cut(s)	976
BmsI	GCATC	2 cut(s)	823, 873
BmuI	ACTGGG	1 cut(s)	976
BpiI	GAAGAC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	784
BsaBI	GATNNNNATC	2 cut(s)	685, 936
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 768
Bse1I	ACTGG	1 cut(s)	971
Bse3DI	GCAATG	3 cut(s)	50, 235, 843
Bse8I	GATNNNNATC	2 cut(s)	685, 936
BseBI	CCWGG	2 cut(s)	75, 101
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	2 cut(s)	55, 977
BseJI	GATNNNNATC	2 cut(s)	685, 936
BseLI	CCNNNNNNNGG	2 cut(s)	632, 768
BseMI	GCAATG	3 cut(s)	50, 235, 843
BseNI	ACTGG	1 cut(s)	971
BseXI	GCAGC	4 cut(s)	311, 364, 367, 839
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	632, 768
BsmAI	GTCTC	4 cut(s)	101, 216, 231, 527
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	89, 743
BsrDI	GCAATG	3 cut(s)	50, 235, 843
BsrI	ACTGG	1 cut(s)	971
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
Bst2UI	CCWGG	2 cut(s)	75, 101
Bst4CI	ACNGT	2 cut(s)	389, 928
Bst6I	CTCTTC	3 cut(s)	166, 334, 451
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	226, 297
BstDEI	CTNAG	2 cut(s)	276, 795
BstENI	CCTNNNNNAGG	1 cut(s)	766
BstF5I	GGATG	2 cut(s)	55, 977
BstKTI	GATC	8 cut(s)	19, 84, 462, 683, 689, 738, 885, 934
BstMAI	GTCTC	4 cut(s)	101, 216, 231, 527
BstMBI	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 833
BstNI	CCWGG	2 cut(s)	75, 101
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	73, 99
BstV1I	GCAGC	4 cut(s)	311, 364, 367, 839
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	4 cut(s)	81, 680, 686, 735
BstYI	RGATCY	4 cut(s)	81, 680, 686, 735
BtsCI	GGATG	2 cut(s)	55, 977
Cac8I	GCNNGC	2 cut(s)	226, 297
CaiI	CAGNNNCTG	1 cut(s)	966
CciI	TCATGA	1 cut(s)	885
Csp6I	GTAC	1 cut(s)	1026
CspCI	CAANNNNNGTGG	2 cut(s)	841, 876
CviAII	CATG	4 cut(s)	28, 292, 544, 886
CviQI	GTAC	1 cut(s)	1026
DdeI	CTNAG	2 cut(s)	276, 795
DpnI	GATC	8 cut(s)	18, 83, 461, 682, 688, 737, 884, 933
DpnII	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
Eam1104I	CTCTTC	3 cut(s)	166, 334, 451
EarI	CTCTTC	3 cut(s)	166, 334, 451
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	766
EcoRII	CCWGG	2 cut(s)	73, 99
EcoT22I	ATGCAT	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	4 cut(s)	31, 295, 547, 889
FatI	CATG	4 cut(s)	27, 291, 543, 885
FbaI	TGATCA	2 cut(s)	882, 931
Fnu4HI	GCNGC	4 cut(s)	300, 378, 381, 828
FokI	GGATG	2 cut(s)	42, 984
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	4 cut(s)	300, 378, 381, 828
FspBI	CTAG	1 cut(s)	684
GluI	GCNGC	4 cut(s)	300, 378, 381, 828
GsuI	CTGGAG	1 cut(s)	83
Hin1II	CATG	4 cut(s)	31, 295, 547, 889
HindIII	AAGCTT	2 cut(s)	107, 709
HinfI	GANTC	7 cut(s)	239, 346, 521, 598, 776, 1037, 1076
HphI	GGTGA	4 cut(s)	401, 731, 764, 833
Hpy166II	GTNNAC	1 cut(s)	1041
Hpy188I	TCNGA	2 cut(s)	459, 619
Hpy188III	TCNNGA	2 cut(s)	684, 886
Hpy8I	GTNNAC	1 cut(s)	1041
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	5 cut(s)	29, 190, 198, 762, 1095
HpyCH4III	ACNGT	2 cut(s)	389, 928
HpyCH4V	TGCA	3 cut(s)	43, 48, 836
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 833
HpyF3I	CTNAG	2 cut(s)	276, 795
Hsp92II	CATG	4 cut(s)	31, 295, 547, 889
Ksp22I	TGATCA	2 cut(s)	882, 931
Kzo9I	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	9 cut(s)	60, 86, 87, 113, 150, 257, 524, 702, 952
Lsp1109I	GCAGC	4 cut(s)	311, 364, 367, 839
LweI	GCATC	2 cut(s)	823, 873
MaeI	CTAG	1 cut(s)	684
MaeIII	GTNAC	2 cut(s)	121, 777
MalI	GATC	8 cut(s)	18, 83, 461, 682, 688, 737, 884, 933
MboI	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
MflI	RGATCY	4 cut(s)	81, 680, 686, 735
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	1069
MlyI	GAGTC	6 cut(s)	233, 530, 607, 785, 1046, 1070
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	1 cut(s)	500
MslI	CAYNNNNRTG	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	1046
MspR9I	CCNGG	2 cut(s)	75, 101
MvaI	CCWGG	2 cut(s)	75, 101
MwoI	GCNNNNNNNGC	2 cut(s)	115, 833
NdeII	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
NlaIII	CATG	4 cut(s)	31, 295, 547, 889
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	2 cut(s)	121, 777
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	1 cut(s)	295
PagI	TCATGA	1 cut(s)	885
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	301, 379, 382, 829
PleI	GAGTC	6 cut(s)	233, 529, 606, 784, 1045, 1070
PpsI	GAGTC	6 cut(s)	233, 529, 606, 784, 1045, 1070
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	73, 99
PspGI	CCWGG	2 cut(s)	73, 99
PspN4I	GGNNCC	1 cut(s)	509
PstNI	CAGNNNCTG	1 cut(s)	966
PsuI	RGATCY	4 cut(s)	81, 680, 686, 735
PvuII	CAGCTG	1 cut(s)	1046
RsaI	GTAC	1 cut(s)	1027
RsaNI	GTAC	1 cut(s)	1026
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	4 cut(s)	300, 378, 381, 828
Sau3AI	GATC	8 cut(s)	16, 81, 459, 680, 686, 735, 882, 931
SchI	GAGTC	6 cut(s)	233, 530, 607, 785, 1046, 1070
ScrFI	CCNGG	2 cut(s)	75, 101
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	823, 873
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	763
SmoI	CTYRAG	1 cut(s)	763
Sse9I	AATT	1 cut(s)	1069
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	73, 99
TaaI	ACNGT	2 cut(s)	389, 928
TaqI	TCGA	2 cut(s)	371, 483
TasI	AATT	1 cut(s)	1069
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TseFI	GTSAC	2 cut(s)	121, 777
TseI	GCWGC	4 cut(s)	299, 377, 380, 827
Tsp45I	GTSAC	2 cut(s)	121, 777
TspDTI	ATGAA	2 cut(s)	300, 1077
Van91I	CCANNNNNTGG	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	766
XapI	RAATTY	1 cut(s)	1069
XbaI	TCTAGA	1 cut(s)	683
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.