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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06868 AT5G49100 |
| fragaria_vesca | FvH4_4g18460 |
| malus_domestica | MD13G1166900.v1.1 MD16G1166700.v1.1 |
| prunus_persica | Prupe.1G133400_v2.0.a1 |
| pyrus_communis | pycom13g14260 pycom16g14070 |
| rosa_chinensis | RchiOBHm_Chr4g0422951 |
| rosa_laevigata | RLG00000007594 |
| rosa_multiflora | Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00365070 |
| rosa_rugosa | Rorug04G0182600 |
| rosa_samantha | Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000 |
| rosa_wichuraiana | Rw4G020910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 574 |
| AccBSI | CCGCTC | 2 cut(s) | 509, 943 |
| AccII | CGCG | 1 cut(s) | 731 |
| AciI | CCGC | 7 cut(s) | 509, 512, 729, 791, 909, 943, 1096 |
| AclWI | GGATC | 4 cut(s) | 152, 885, 891, 953 |
| AcoI | YGGCCR | 1 cut(s) | 1093 |
| AcuI | CTGAAG | 2 cut(s) | 201, 1185 |
| AfeI | AGCGCT | 1 cut(s) | 826 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 574, 768 |
| AgsI | TTSAA | 2 cut(s) | 80, 670 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1085 |
| AjnI | CCWGG | 3 cut(s) | 136, 431, 573 |
| AluBI | AGCT | 8 cut(s) | 172, 181, 359, 806, 921, 1084, 1107, 1199 |
| AluI | AGCT | 8 cut(s) | 172, 181, 359, 806, 921, 1084, 1107, 1199 |
| Alw21I | GWGCWC | 1 cut(s) | 476 |
| Alw26I | GTCTC | 2 cut(s) | 889, 993 |
| AlwI | GGATC | 4 cut(s) | 152, 885, 891, 953 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 362, 806, 1050, 1107 |
| Ama87I | CYCGRG | 1 cut(s) | 886 |
| Aor51HI | AGCGCT | 1 cut(s) | 826 |
| AoxI | GGCC | 4 cut(s) | 61, 861, 1011, 1093 |
| AspLEI | GCGC | 3 cut(s) | 733, 827, 879 |
| AspS9I | GGNCC | 2 cut(s) | 61, 302 |
| AsuHPI | GGTGA | 3 cut(s) | 58, 941, 1135 |
| AsuII | TTCGAA | 1 cut(s) | 1166 |
| AsuNHI | GCTAGC | 2 cut(s) | 827, 1124 |
| AvaI | CYCGRG | 1 cut(s) | 886 |
| AvaII | GGWCC | 1 cut(s) | 302 |
| BanII | GRGCYC | 1 cut(s) | 565 |
| BbsI | GAAGAC | 3 cut(s) | 180, 300, 489 |
| Bbv12I | GWGCWC | 1 cut(s) | 476 |
| BbvCI | CCTCAGC | 1 cut(s) | 355 |
| BccI | CCATC | 6 cut(s) | 7, 72, 92, 126, 572, 1166 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 770, 804 |
| BciT130I | CCWGG | 3 cut(s) | 138, 433, 575 |
| BclI | TGATCA | 1 cut(s) | 70 |
| BcoDI | GTCTC | 2 cut(s) | 889, 993 |
| BfaI | CTAG | 3 cut(s) | 372, 828, 1125 |
| BfmI | CTRYAG | 1 cut(s) | 807 |
| BfoI | RGCGCY | 1 cut(s) | 828 |
| BglII | AGATCT | 2 cut(s) | 248, 696 |
| Bme1390I | CCNGG | 3 cut(s) | 138, 433, 575 |
| Bme18I | GGWCC | 1 cut(s) | 302 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1085 |
| BmeT110I | CYCGRG | 1 cut(s) | 886 |
| BmgT120I | GGNCC | 2 cut(s) | 61, 302 |
| BmrFI | CCNGG | 3 cut(s) | 138, 433, 575 |
| BmrI | ACTGGG | 1 cut(s) | 963 |
| BmsI | GCATC | 2 cut(s) | 30, 93 |
| BmtI | GCTAGC | 2 cut(s) | 831, 1128 |
| BmuI | ACTGGG | 1 cut(s) | 963 |
| BpiI | GAAGAC | 3 cut(s) | 180, 300, 489 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 932, 964 |
| Bpu10I | CCTNAGC | 1 cut(s) | 355 |
| Bpu14I | TTCGAA | 1 cut(s) | 1166 |
| BsaBI | GATNNNNATC | 1 cut(s) | 895 |
| BsaI | GGTCTC | 1 cut(s) | 889 |
| BsaJI | CCNNGG | 4 cut(s) | 136, 858, 1008, 1090 |
| BsaWI | WCCGGW | 1 cut(s) | 926 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 30, 60 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 574, 768 |
| Bse1I | ACTGG | 1 cut(s) | 958 |
| Bse3DI | GCAATG | 1 cut(s) | 292 |
| Bse8I | GATNNNNATC | 1 cut(s) | 895 |
| BseBI | CCWGG | 3 cut(s) | 138, 433, 575 |
| BseDI | CCNNGG | 4 cut(s) | 136, 858, 1008, 1090 |
| BseGI | GGATG | 3 cut(s) | 108, 118, 583 |
| BseJI | GATNNNNATC | 1 cut(s) | 895 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 574, 768 |
| BseMI | GCAATG | 1 cut(s) | 292 |
| BseMII | CTCAG | 6 cut(s) | 354, 369, 576, 758, 988, 1004 |
| BseNI | ACTGG | 1 cut(s) | 958 |
| BseRI | GAGGAG | 6 cut(s) | 45, 48, 51, 214, 643, 856 |
| BseYI | CCCAGC | 3 cut(s) | 349, 1107, 1113 |
| BsgI | GTGCAG | 2 cut(s) | 130, 952 |
| Bsh1236I | CGCG | 1 cut(s) | 731 |
| Bsh1285I | CGRYCG | 2 cut(s) | 505, 795 |
| BshFI | GGCC | 4 cut(s) | 63, 863, 1013, 1095 |
| BsiEI | CGRYCG | 2 cut(s) | 505, 795 |
| BsiHKAI | GWGCWC | 1 cut(s) | 476 |
| BsiHKCI | CYCGRG | 1 cut(s) | 886 |
| BsiSI | CCGG | 1 cut(s) | 927 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 574, 768 |
| BsmAI | GTCTC | 2 cut(s) | 889, 993 |
| BsmI | GAATGC | 1 cut(s) | 1233 |
| BsnI | GGCC | 4 cut(s) | 63, 863, 1013, 1095 |
| Bso31I | GGTCTC | 1 cut(s) | 889 |
| BsoBI | CYCGRG | 1 cut(s) | 886 |
| Bsp119I | TTCGAA | 1 cut(s) | 1166 |
| Bsp1286I | GDGCHC | 2 cut(s) | 476, 565 |
| Bsp143I | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| Bsp19I | CCATGG | 1 cut(s) | 1090 |
| BspACI | CCGC | 7 cut(s) | 509, 512, 729, 791, 909, 943, 1096 |
| BspANI | GGCC | 4 cut(s) | 63, 863, 1013, 1095 |
| BspCNI | CTCAG | 6 cut(s) | 353, 368, 577, 759, 987, 1003 |
| BspFNI | CGCG | 1 cut(s) | 731 |
| BspHI | TCATGA | 1 cut(s) | 67 |
| BspMAI | CTGCAG | 1 cut(s) | 811 |
| BspOI | GCTAGC | 2 cut(s) | 831, 1128 |
| BspPI | GGATC | 4 cut(s) | 152, 885, 891, 953 |
| BspQI | GCTCTTC | 2 cut(s) | 421, 553 |
| BspT104I | TTCGAA | 1 cut(s) | 1166 |
| BspTNI | GGTCTC | 1 cut(s) | 889 |
| BsrBI | CCGCTC | 2 cut(s) | 509, 943 |
| BsrDI | GCAATG | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 958 |
| BssECI | CCNNGG | 4 cut(s) | 136, 858, 1008, 1090 |
| BssMI | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| BssT1I | CCWWGG | 2 cut(s) | 1008, 1090 |
| Bst2UI | CCWGG | 3 cut(s) | 138, 433, 575 |
| Bst4CI | ACNGT | 3 cut(s) | 259, 665, 1025 |
| Bst6I | CTCTTC | 5 cut(s) | 232, 421, 553, 712, 1172 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 806 |
| BstBI | TTCGAA | 1 cut(s) | 1166 |
| BstC8I | GCNNGC | 5 cut(s) | 829, 1004, 1015, 1126, 1197 |
| BstDEI | CTNAG | 6 cut(s) | 340, 355, 585, 767, 974, 990 |
| BstDSI | CCRYGG | 1 cut(s) | 1090 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 766 |
| BstF5I | GGATG | 3 cut(s) | 108, 118, 583 |
| BstFNI | CGCG | 1 cut(s) | 731 |
| BstH2I | RGCGCY | 1 cut(s) | 828 |
| BstHHI | GCGC | 3 cut(s) | 733, 827, 879 |
| BstKTI | GATC | 9 cut(s) | 73, 85, 147, 251, 505, 699, 893, 899, 948 |
| BstMAI | GTCTC | 2 cut(s) | 889, 993 |
| BstMBI | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| BstMCI | CGRYCG | 2 cut(s) | 505, 795 |
| BstNI | CCWGG | 3 cut(s) | 138, 433, 575 |
| BstSCI | CCNGG | 3 cut(s) | 136, 431, 573 |
| BstSFI | CTRYAG | 1 cut(s) | 807 |
| BstUI | CGCG | 1 cut(s) | 731 |
| BstV2I | GAAGAC | 3 cut(s) | 180, 300, 489 |
| BstX2I | RGATCY | 6 cut(s) | 144, 248, 696, 890, 896, 945 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 751 |
| BstYI | RGATCY | 6 cut(s) | 144, 248, 696, 890, 896, 945 |
| BsuRI | GGCC | 4 cut(s) | 63, 863, 1013, 1095 |
| BtgI | CCRYGG | 1 cut(s) | 1090 |
| BtsCI | GGATG | 3 cut(s) | 108, 118, 583 |
| BtsI | GCAGTG | 5 cut(s) | 113, 118, 474, 849, 1048 |
| BtsIMutI | CAGTG | 6 cut(s) | 113, 118, 255, 474, 849, 1048 |
| Cac8I | GCNNGC | 5 cut(s) | 829, 1004, 1015, 1126, 1197 |
| CaiI | CAGNNNCTG | 4 cut(s) | 362, 806, 1050, 1107 |
| CciI | TCATGA | 1 cut(s) | 67 |
| CfoI | GCGC | 3 cut(s) | 733, 827, 879 |
| Cfr13I | GGNCC | 2 cut(s) | 61, 302 |
| CseI | GACGC | 2 cut(s) | 483, 1006 |
| CviAII | CATG | 6 cut(s) | 68, 91, 212, 1054, 1091, 1132 |
| DdeI | CTNAG | 6 cut(s) | 340, 355, 585, 767, 974, 990 |
| DpnI | GATC | 9 cut(s) | 72, 84, 146, 250, 504, 698, 892, 898, 947 |
| DpnII | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1085 |
| EaeI | YGGCCR | 1 cut(s) | 1093 |
| Eam1104I | CTCTTC | 5 cut(s) | 232, 421, 553, 712, 1172 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1085 |
| EarI | CTCTTC | 5 cut(s) | 232, 421, 553, 712, 1172 |
| Eco130I | CCWWGG | 2 cut(s) | 1008, 1090 |
| Eco24I | GRGCYC | 1 cut(s) | 565 |
| Eco31I | GGTCTC | 1 cut(s) | 889 |
| Eco47I | GGWCC | 1 cut(s) | 302 |
| Eco47III | AGCGCT | 1 cut(s) | 826 |
| Eco57I | CTGAAG | 2 cut(s) | 201, 1185 |
| Eco88I | CYCGRG | 1 cut(s) | 886 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 766 |
| EcoRII | CCWGG | 3 cut(s) | 136, 431, 573 |
| EcoT14I | CCWWGG | 2 cut(s) | 1008, 1090 |
| EcoT38I | GRGCYC | 1 cut(s) | 565 |
| ErhI | CCWWGG | 2 cut(s) | 1008, 1090 |
| FaeI | CATG | 6 cut(s) | 71, 94, 215, 1057, 1094, 1135 |
| FaiI | YATR | 9 cut(s) | 69, 92, 124, 213, 279, 1055, 1092, 1133, 1187 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 156, 188 |
| FatI | CATG | 6 cut(s) | 67, 90, 211, 1053, 1090, 1131 |
| FbaI | TGATCA | 1 cut(s) | 70 |
| FokI | GGATG | 3 cut(s) | 105, 115, 590 |
| FriOI | GRGCYC | 1 cut(s) | 565 |
| FspBI | CTAG | 3 cut(s) | 372, 828, 1125 |
| GlaI | GCGC | 3 cut(s) | 732, 826, 878 |
| GsaI | CCCAGC | 3 cut(s) | 353, 1111, 1117 |
| HaeII | RGCGCY | 1 cut(s) | 828 |
| HaeIII | GGCC | 4 cut(s) | 63, 863, 1013, 1095 |
| HapII | CCGG | 1 cut(s) | 927 |
| HgaI | GACGC | 2 cut(s) | 483, 1006 |
| HhaI | GCGC | 3 cut(s) | 733, 827, 879 |
| Hin1II | CATG | 6 cut(s) | 71, 94, 215, 1057, 1094, 1135 |
| Hin6I | GCGC | 3 cut(s) | 731, 825, 877 |
| HinP1I | GCGC | 3 cut(s) | 731, 825, 877 |
| HindIII | AAGCTT | 4 cut(s) | 170, 179, 919, 1197 |
| HinfI | GANTC | 2 cut(s) | 740, 986 |
| HpaII | CCGG | 1 cut(s) | 927 |
| HphI | GGTGA | 3 cut(s) | 58, 941, 1135 |
| Hpy166II | GTNNAC | 2 cut(s) | 346, 1021 |
| Hpy188I | TCNGA | 8 cut(s) | 253, 502, 586, 768, 977, 993, 1204, 1256 |
| Hpy188III | TCNNGA | 7 cut(s) | 68, 80, 86, 401, 886, 888, 894 |
| Hpy8I | GTNNAC | 2 cut(s) | 346, 1021 |
| Hpy99I | CGWCG | 2 cut(s) | 821, 905 |
| HpyCH4III | ACNGT | 3 cut(s) | 259, 665, 1025 |
| HpyCH4V | TGCA | 6 cut(s) | 106, 111, 365, 809, 969, 1053 |
| HpyF3I | CTNAG | 6 cut(s) | 340, 355, 585, 767, 974, 990 |
| Hsp92II | CATG | 6 cut(s) | 71, 94, 215, 1057, 1094, 1135 |
| HspAI | GCGC | 3 cut(s) | 731, 825, 877 |
| Ksp22I | TGATCA | 1 cut(s) | 70 |
| Kzo9I | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| LguI | GCTCTTC | 2 cut(s) | 421, 553 |
| LmnI | GCTCC | 1 cut(s) | 1104 |
| LweI | GCATC | 2 cut(s) | 30, 93 |
| MaeI | CTAG | 3 cut(s) | 372, 828, 1125 |
| MaeIII | GTNAC | 4 cut(s) | 113, 386, 929, 1025 |
| MalI | GATC | 9 cut(s) | 72, 84, 146, 250, 504, 698, 892, 898, 947 |
| MbiI | CCGCTC | 2 cut(s) | 509, 943 |
| MboI | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| MflI | RGATCY | 6 cut(s) | 144, 248, 696, 890, 896, 945 |
| MhlI | GDGCHC | 2 cut(s) | 476, 565 |
| MluCI | AATT | 1 cut(s) | 391 |
| MlyI | GAGTC | 2 cut(s) | 734, 995 |
| MseI | TTAA | 1 cut(s) | 527 |
| MspA1I | CMGCKG | 1 cut(s) | 806 |
| MspI | CCGG | 1 cut(s) | 927 |
| MspR9I | CCNGG | 3 cut(s) | 138, 433, 575 |
| Mva1269I | GAATGC | 1 cut(s) | 1233 |
| MvaI | CCWGG | 3 cut(s) | 138, 433, 575 |
| MvnI | CGCG | 1 cut(s) | 731 |
| NcoI | CCATGG | 1 cut(s) | 1090 |
| NdeII | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| NheI | GCTAGC | 2 cut(s) | 827, 1124 |
| NlaIII | CATG | 6 cut(s) | 71, 94, 215, 1057, 1094, 1135 |
| NmeAIII | GCCGAG | 1 cut(s) | 839 |
| NmuCI | GTSAC | 3 cut(s) | 113, 929, 1025 |
| NspV | TTCGAA | 1 cut(s) | 1166 |
| PaeR7I | CTCGAG | 1 cut(s) | 886 |
| PagI | TCATGA | 1 cut(s) | 67 |
| PciSI | GCTCTTC | 2 cut(s) | 421, 553 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 866 |
| PctI | GAATGC | 1 cut(s) | 1233 |
| PflFI | GACNNNGTC | 1 cut(s) | 257 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 574 |
| PfoI | TCCNGGA | 1 cut(s) | 573 |
| Ple19I | CGATCG | 1 cut(s) | 505 |
| PleI | GAGTC | 2 cut(s) | 734, 994 |
| PpsI | GAGTC | 2 cut(s) | 734, 994 |
| Psp6I | CCWGG | 3 cut(s) | 136, 431, 573 |
| PspFI | CCCAGC | 3 cut(s) | 349, 1107, 1113 |
| PspGI | CCWGG | 3 cut(s) | 136, 431, 573 |
| PspPI | GGNCC | 2 cut(s) | 61, 302 |
| PstI | CTGCAG | 1 cut(s) | 811 |
| PstNI | CAGNNNCTG | 4 cut(s) | 362, 806, 1050, 1107 |
| PsuI | RGATCY | 6 cut(s) | 144, 248, 696, 890, 896, 945 |
| PsyI | GACNNNGTC | 1 cut(s) | 257 |
| PvuI | CGATCG | 1 cut(s) | 505 |
| PvuII | CAGCTG | 1 cut(s) | 806 |
| SapI | GCTCTTC | 2 cut(s) | 421, 553 |
| SaqAI | TTAA | 1 cut(s) | 527 |
| Sau3AI | GATC | 9 cut(s) | 70, 82, 144, 248, 502, 696, 890, 896, 945 |
| Sau96I | GGNCC | 2 cut(s) | 61, 302 |
| SchI | GAGTC | 2 cut(s) | 734, 995 |
| ScrFI | CCNGG | 3 cut(s) | 138, 433, 575 |
| SduI | GDGCHC | 2 cut(s) | 476, 565 |
| SfaNI | GCATC | 2 cut(s) | 30, 93 |
| SfcI | CTRYAG | 1 cut(s) | 807 |
| Sfr274I | CTCGAG | 1 cut(s) | 886 |
| SfuI | TTCGAA | 1 cut(s) | 1166 |
| SinI | GGWCC | 1 cut(s) | 302 |
| SlaI | CTCGAG | 1 cut(s) | 886 |
| SmlI | CTYRAG | 1 cut(s) | 886 |
| SmoI | CTYRAG | 1 cut(s) | 886 |
| Sse9I | AATT | 1 cut(s) | 391 |
| SsiI | CCGC | 7 cut(s) | 509, 512, 729, 791, 909, 943, 1096 |
| SspI | AATATT | 1 cut(s) | 382 |
| SspMI | CTAG | 3 cut(s) | 372, 828, 1125 |
| StyD4I | CCNGG | 3 cut(s) | 136, 431, 573 |
| StyI | CCWWGG | 2 cut(s) | 1008, 1090 |
| TaaI | ACNGT | 3 cut(s) | 259, 665, 1025 |
| TaqI | TCGA | 9 cut(s) | 505, 542, 684, 795, 873, 887, 939, 984, 1166 |
| TasI | AATT | 1 cut(s) | 391 |
| TauI | GCSGC | 5 cut(s) | 512, 515, 731, 912, 1098 |
| Tru1I | TTAA | 1 cut(s) | 527 |
| Tru9I | TTAA | 1 cut(s) | 527 |
| TscAI | CASTG | 6 cut(s) | 113, 118, 262, 481, 856, 1055 |
| TseFI | GTSAC | 3 cut(s) | 113, 929, 1025 |
| Tsp45I | GTSAC | 3 cut(s) | 113, 929, 1025 |
| TspDTI | ATGAA | 3 cut(s) | 200, 266, 1070 |
| TspGWI | ACGGA | 3 cut(s) | 294, 889, 1044 |
| TspRI | CASTG | 6 cut(s) | 113, 118, 262, 481, 856, 1055 |
| Tth111I | GACNNNGTC | 1 cut(s) | 257 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 574 |
| VpaK11BI | GGWCC | 1 cut(s) | 302 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 766 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 170, 575 |
| XhoI | CTCGAG | 1 cut(s) | 886 |
| XspI | CTAG | 3 cut(s) | 372, 828, 1125 |