Rw4G020910

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
45052484 .. 45053780
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020910.1

Sequence Viewer

Length: 1194 bp
ATGATGGAAGGAATCAAAGGCTCAGGAGGAGGGAAGGTTGCCATTGGTGTAGGCAATGGTGTTGGTCACGACCAGATTATTCAGGATCAAGACATGGGAGATGGAATGCAGTGCAGTGACCATCCTTACAGAAACAACCCAGGTGGGATCTGCGCTTTCTGTCTCCAAGAGAAGCTCGGCAAGCTCGTCTCTTCCTCCTTCCCTCTCCCCGTTCGTAACTCCGCCTCTTCTTCCTCCTCTCCTTCTTTTAGATCTGACATCACCGGCGCCACCAATGCCGGCGGTGTCAGCGTCGCTGCTCCTTCCTCTACCTCCCTCTCGCTCTCGCTCTCGTATTACACCCGGCGGGCCAGGATGTCGTTCCTTCTGCCAGCAAGAAGAAGAAGCCGCGCCGCCGATATGGTTTTCAAGAGGAGCAAGTCGACCGCAACGCCTCGGAGGGGCCATTTCATGGATGCTGCTGACGACTTTAGCCCCAGAAAGAGAAATGGGTTCTGGTCCTTTCTCTACCACCACCACAAAACTTCCAAGAAAATCGACAACAAGAGCTTCAGAGACAACTCCAAGATATCTTCCTCCTCCTCCTTCGCATCTTCGGCCACAGCAACAACAACAGCAGCTGGAAGGGACAAGTCTTTGGGCTCTTCTCTGAGGAATAAAGCCGAAACCGCGGTGGGTGACGTTGAAGACGACAGCAGTCCCAACAGCCAAGCCACTGCTTCAATCCAGATCTGTCGGCTGCGGTCAGCCGGCTTCTCAGGCGACTTTTTCGAGCGGATCTCGACTGGTTTCGGCGACTGCACTCTCAGAAGGGTCGAGTCTCAAAGAGAAGGCAAGCCTAAACACTCTTCATCATCAGCAGTTCGCAACGGCGCCGAGCGTGTCAAATGTGGTGGGCTTTTCAGTGGGTTCATGATGACTTCATCTTCTTCATCCTCTTCGTCTTCCTCGTATTGGGTCTCCTCCTCAGCCGAAGACATGAACGGGAAGCCAATATCCGGTGGACCCGGGCCGCTAGTCAACGGGAGAAGCAGGAGCAGCTGGGGTTGGGCCTTCGCTAGCCCCATGAGAGCTTTCAGCAAACCTTCTTCGAAAGACGGGAAGAGGGACATTATTAGACAAGCGAATACTTCAGATAAGAACACCACCCCCAACTTGTCTGCAATTCCTTCCTTGCTATCTGTGAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

42.19

Weight (kDa)

10.16

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 266, 872
AccB7I CCANNNNNTGG 1 cut(s) 451
AccBSI CCGCTC 1 cut(s) 775
AccI GTMKAC 1 cut(s) 422
AccII CGCG 2 cut(s) 390, 671
AclWI GGATC 3 cut(s) 93, 155, 785
AcoI YGGCCR 1 cut(s) 597
AcuI CTGAAG 2 cut(s) 535, 1116
AcyI GRCGYC 2 cut(s) 267, 873
AfiI CCNNNNNNNGG 4 cut(s) 440, 451, 954, 998
AgsI TTSAA 3 cut(s) 409, 686, 723
AjnI CCWGG 2 cut(s) 139, 350
AluBI AGCT 6 cut(s) 175, 184, 549, 620, 1041, 1073
AluI AGCT 6 cut(s) 175, 184, 549, 620, 1041, 1073
Alw26I GTCTC 5 cut(s) 167, 193, 549, 825, 964
AlwI GGATC 3 cut(s) 93, 155, 785
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 1007
AoxI GGCC 5 cut(s) 348, 442, 597, 1010, 1050
ApeKI GCWGC 5 cut(s) 296, 458, 617, 739, 1038
AspLEI GCGC 4 cut(s) 155, 269, 392, 875
AspS9I GGNCC 6 cut(s) 348, 442, 498, 1004, 1010, 1050
AsuC2I CCSGG 3 cut(s) 343, 1008, 1009
AsuHPI GGTGA 2 cut(s) 253, 689
AsuII TTCGAA 1 cut(s) 1091
AsuNHI GCTAGC 1 cut(s) 1058
AvaI CYCGRG 1 cut(s) 1007
AvaII GGWCC 2 cut(s) 498, 1004
BanI GGYRCC 2 cut(s) 266, 872
BanII GRGCYC 1 cut(s) 644
BbsI GAAGAC 3 cut(s) 693, 936, 981
BbvCI CCTCAGC 1 cut(s) 967
BbvI GCAGC 5 cut(s) 283, 445, 629, 726, 1050
BccI CCATC 2 cut(s) 95, 129
BceAI ACGGC 1 cut(s) 886
BciT130I CCWGG 2 cut(s) 141, 352
BcnI CCSGG 3 cut(s) 343, 1008, 1009
BcoDI GTCTC 5 cut(s) 167, 193, 549, 825, 964
BfaI CTAG 2 cut(s) 1016, 1059
BfoI RGCGCY 2 cut(s) 270, 876
BglII AGATCT 2 cut(s) 251, 729
BisI GCNGC 8 cut(s) 297, 388, 393, 459, 618, 740, 1013, 1039
BlsI GCNGC 8 cut(s) 298, 389, 394, 460, 619, 741, 1014, 1040
Bme1390I CCNGG 5 cut(s) 141, 343, 352, 1008, 1009
Bme18I GGWCC 2 cut(s) 498, 1004
BmeT110I CYCGRG 1 cut(s) 1007
BmgT120I GGNCC 6 cut(s) 348, 442, 498, 1004, 1010, 1050
BmiI GGNNCC 4 cut(s) 268, 443, 874, 1006
BmrFI CCNGG 5 cut(s) 141, 343, 352, 1008, 1009
BmsI GCATC 2 cut(s) 445, 599
BmtI GCTAGC 1 cut(s) 1062
BoxI GACNNNNGTC 1 cut(s) 696
BpiI GAAGAC 3 cut(s) 693, 936, 981
BplI GAGNNNNNCTC 2 cut(s) 764, 796
Bpu10I CCTNAGC 2 cut(s) 22, 967
Bpu14I TTCGAA 1 cut(s) 1091
BpuMI CCSGG 3 cut(s) 343, 1008, 1009
BsaHI GRCGYC 2 cut(s) 267, 873
BsaI GGTCTC 1 cut(s) 964
BsaJI CCNNGG 4 cut(s) 139, 434, 669, 1007
BsaWI WCCGGW 1 cut(s) 998
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 4 cut(s) 440, 451, 954, 998
Bse118I RCCGGY 3 cut(s) 263, 278, 749
Bse1I ACTGG 1 cut(s) 790
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 141, 352
BseDI CCNNGG 4 cut(s) 139, 434, 669, 1007
BseGI GGATG 4 cut(s) 121, 360, 460, 932
BseLI CCNNNNNNNGG 4 cut(s) 440, 451, 954, 998
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 5 cut(s) 36, 641, 771, 820, 981
BseNI ACTGG 1 cut(s) 790
BseRI GAGGAG 7 cut(s) 42, 226, 427, 568, 571, 952, 955
BseXI GCAGC 5 cut(s) 283, 445, 629, 726, 1050
BseYI CCCAGC 1 cut(s) 1041
BsgI GTGCAG 2 cut(s) 133, 784
Bsh1236I CGCG 2 cut(s) 390, 671
Bsh1285I CGRYCG 1 cut(s) 426
BshFI GGCC 5 cut(s) 350, 444, 599, 1012, 1052
BshNI GGYRCC 2 cut(s) 266, 872
BsiEI CGRYCG 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 1007
BsiSI CCGG 6 cut(s) 264, 279, 343, 750, 999, 1008
BslFI GGGAC 3 cut(s) 641, 684, 1121
BslI CCNNNNNNNGG 4 cut(s) 440, 451, 954, 998
BsmAI GTCTC 5 cut(s) 167, 193, 549, 825, 964
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 641, 684, 1121
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 5 cut(s) 350, 444, 599, 1012, 1052
Bso31I GGTCTC 1 cut(s) 964
BsoBI CYCGRG 1 cut(s) 1007
Bsp119I TTCGAA 1 cut(s) 1091
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 5 cut(s) 85, 147, 251, 729, 777
BspANI GGCC 5 cut(s) 350, 444, 599, 1012, 1052
BspCNI CTCAG 5 cut(s) 35, 642, 770, 819, 980
BspFNI CGCG 2 cut(s) 390, 671
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 4 cut(s) 268, 443, 874, 1006
BspOI GCTAGC 1 cut(s) 1062
BspPI GGATC 3 cut(s) 93, 155, 785
BspQI GCTCTTC 1 cut(s) 649
BspT104I TTCGAA 1 cut(s) 1091
BspT107I GGYRCC 2 cut(s) 266, 872
BspTNI GGTCTC 1 cut(s) 964
BsrBI CCGCTC 1 cut(s) 775
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 3 cut(s) 263, 278, 749
BsrI ACTGG 1 cut(s) 790
BssAI RCCGGY 3 cut(s) 263, 278, 749
BssECI CCNNGG 4 cut(s) 139, 434, 669, 1007
BssMI GATC 5 cut(s) 85, 147, 251, 729, 777
BssNI GRCGYC 2 cut(s) 267, 873
Bst2UI CCWGG 2 cut(s) 141, 352
Bst6I CTCTTC 6 cut(s) 196, 232, 649, 853, 943, 1097
BstACI GRCGYC 2 cut(s) 267, 873
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 7 cut(s) 182, 280, 348, 372, 751, 836, 1060
BstDEI CTNAG 5 cut(s) 22, 650, 757, 806, 967
BstDSI CCRYGG 1 cut(s) 669
BstF5I GGATG 4 cut(s) 121, 360, 460, 932
BstFNI CGCG 2 cut(s) 390, 671
BstH2I RGCGCY 2 cut(s) 270, 876
BstHHI GCGC 4 cut(s) 155, 269, 392, 875
BstKTI GATC 5 cut(s) 88, 150, 254, 732, 780
BstMAI GTCTC 5 cut(s) 167, 193, 549, 825, 964
BstMBI GATC 5 cut(s) 85, 147, 251, 729, 777
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 7 cut(s) 181, 275, 288, 596, 668, 759, 1038
BstNI CCWGG 2 cut(s) 141, 352
BstPAI GACNNNNGTC 1 cut(s) 696
BstSCI CCNGG 5 cut(s) 139, 341, 350, 1006, 1007
BstUI CGCG 2 cut(s) 390, 671
BstV1I GCAGC 5 cut(s) 283, 445, 629, 726, 1050
BstV2I GAAGAC 3 cut(s) 693, 936, 981
BstX2I RGATCY 4 cut(s) 147, 251, 729, 777
BstYI RGATCY 4 cut(s) 147, 251, 729, 777
BsuRI GGCC 5 cut(s) 350, 444, 599, 1012, 1052
BtgI CCRYGG 1 cut(s) 669
BtsCI GGATG 4 cut(s) 121, 360, 460, 932
BtsI GCAGTG 3 cut(s) 116, 121, 714
BtsIMutI CAGTG 4 cut(s) 116, 121, 714, 910
Cac8I GCNNGC 7 cut(s) 182, 280, 348, 372, 751, 836, 1060
CaiI CAGNNNCTG 1 cut(s) 620
CciI TCATGA 1 cut(s) 912
CfoI GCGC 4 cut(s) 155, 269, 392, 875
Cfr10I RCCGGY 3 cut(s) 263, 278, 749
Cfr13I GGNCC 6 cut(s) 348, 442, 498, 1004, 1010, 1050
Cfr42I CCGCGG 1 cut(s) 672
Cfr9I CCCGGG 1 cut(s) 1007
CseI GACGC 1 cut(s) 280
CspCI CAANNNNNGTGG 4 cut(s) 124, 159, 874, 909
CviAII CATG 5 cut(s) 94, 451, 913, 979, 1066
DdeI CTNAG 5 cut(s) 22, 650, 757, 806, 967
DinI GGCGCC 2 cut(s) 268, 874
DpnI GATC 5 cut(s) 87, 149, 253, 731, 779
DpnII GATC 5 cut(s) 85, 147, 251, 729, 777
EaeI YGGCCR 1 cut(s) 597
Eam1104I CTCTTC 6 cut(s) 196, 232, 649, 853, 943, 1097
EarI CTCTTC 6 cut(s) 196, 232, 649, 853, 943, 1097
EciI GGCGGA 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 644
Eco31I GGTCTC 1 cut(s) 964
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 2 cut(s) 498, 1004
Eco57I CTGAAG 2 cut(s) 535, 1116
Eco88I CYCGRG 1 cut(s) 1007
EcoRII CCWGG 2 cut(s) 139, 350
EcoRV GATATC 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 644
EgeI GGCGCC 2 cut(s) 268, 874
EheI GGCGCC 2 cut(s) 268, 874
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 5 cut(s) 97, 454, 916, 982, 1069
FaiI YATR 6 cut(s) 95, 401, 452, 914, 980, 1067
FaqI GGGAC 3 cut(s) 641, 684, 1121
FatI CATG 5 cut(s) 93, 450, 912, 978, 1065
FauI CCCGC 1 cut(s) 339
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 8 cut(s) 297, 388, 393, 459, 618, 740, 1013, 1039
FokI GGATG 4 cut(s) 108, 367, 467, 919
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 8 cut(s) 297, 388, 393, 459, 618, 740, 1013, 1039
FspBI CTAG 2 cut(s) 1016, 1059
GlaI GCGC 4 cut(s) 154, 268, 391, 874
GluI GCNGC 8 cut(s) 297, 388, 393, 459, 618, 740, 1013, 1039
GsaI CCCAGC 1 cut(s) 1045
HaeII RGCGCY 2 cut(s) 270, 876
HaeIII GGCC 5 cut(s) 350, 444, 599, 1012, 1052
HapII CCGG 6 cut(s) 264, 279, 343, 750, 999, 1008
HgaI GACGC 1 cut(s) 280
HhaI GCGC 4 cut(s) 155, 269, 392, 875
Hin1I GRCGYC 2 cut(s) 267, 873
Hin1II CATG 5 cut(s) 97, 454, 916, 982, 1069
Hin6I GCGC 4 cut(s) 153, 267, 390, 873
HinP1I GCGC 4 cut(s) 153, 267, 390, 873
HincII GTYRAC 2 cut(s) 423, 1021
HindII GTYRAC 2 cut(s) 423, 1021
HinfI GANTC 2 cut(s) 12, 818
HpaII CCGG 6 cut(s) 264, 279, 343, 750, 999, 1008
HphI GGTGA 2 cut(s) 253, 689
Hpy166II GTNNAC 3 cut(s) 423, 1004, 1021
Hpy188I TCNGA 6 cut(s) 256, 438, 554, 651, 809, 1135
Hpy188III TCNNGA 8 cut(s) 24, 68, 83, 89, 409, 727, 781, 913
Hpy8I GTNNAC 3 cut(s) 423, 1004, 1021
Hpy99I CGWCG 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 681
HpyCH4V TGCA 4 cut(s) 109, 114, 801, 1163
HpyF10VI GCNNNNNNNGC 7 cut(s) 181, 275, 288, 596, 668, 759, 1038
HpyF3I CTNAG 5 cut(s) 22, 650, 757, 806, 967
HpySE526I ACGT 1 cut(s) 681
Hsp92I GRCGYC 2 cut(s) 267, 873
Hsp92II CATG 5 cut(s) 97, 454, 916, 982, 1069
HspAI GCGC 4 cut(s) 153, 267, 390, 873
KasI GGCGCC 2 cut(s) 266, 872
KroI GCCGGC 2 cut(s) 278, 749
KroNI GCCGGC 2 cut(s) 280, 751
KspI CCGCGG 1 cut(s) 672
Kzo9I GATC 5 cut(s) 85, 147, 251, 729, 777
LguI GCTCTTC 1 cut(s) 649
LmnI GCTCC 3 cut(s) 304, 414, 1035
Lsp1109I GCAGC 5 cut(s) 283, 445, 629, 726, 1050
LweI GCATC 2 cut(s) 445, 599
MaeI CTAG 2 cut(s) 1016, 1059
MaeII ACGT 1 cut(s) 681
MaeIII GTNAC 4 cut(s) 65, 116, 215, 677
MalI GATC 5 cut(s) 87, 149, 253, 731, 779
MbiI CCGCTC 1 cut(s) 775
MboI GATC 5 cut(s) 85, 147, 251, 729, 777
MflI RGATCY 4 cut(s) 147, 251, 729, 777
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 1 cut(s) 1164
Mly113I GGCGCC 2 cut(s) 267, 873
MlyI GAGTC 1 cut(s) 827
MroNI GCCGGC 2 cut(s) 278, 749
MspA1I CMGCKG 3 cut(s) 620, 671, 1041
MspI CCGG 6 cut(s) 264, 279, 343, 750, 999, 1008
MspR9I CCNGG 5 cut(s) 141, 343, 352, 1008, 1009
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 141, 352
MvnI CGCG 2 cut(s) 390, 671
MwoI GCNNNNNNNGC 7 cut(s) 181, 275, 288, 596, 668, 759, 1038
NaeI GCCGGC 2 cut(s) 280, 751
NarI GGCGCC 2 cut(s) 267, 873
NciI CCSGG 3 cut(s) 343, 1008, 1009
NdeII GATC 5 cut(s) 85, 147, 251, 729, 777
NgoMIV GCCGGC 2 cut(s) 278, 749
NheI GCTAGC 1 cut(s) 1058
NlaIII CATG 5 cut(s) 97, 454, 916, 982, 1069
NlaIV GGNNCC 4 cut(s) 268, 443, 874, 1006
NmeAIII GCCGAG 2 cut(s) 156, 901
NmuCI GTSAC 3 cut(s) 65, 116, 677
NspV TTCGAA 1 cut(s) 1091
PagI TCATGA 1 cut(s) 912
PciSI GCTCTTC 1 cut(s) 649
PcsI WCGNNNNNNNCGW 3 cut(s) 183, 687, 947
PctI GAATGC 1 cut(s) 111
PdiI GCCGGC 2 cut(s) 280, 751
PfeI GAWTC 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 8 cut(s) 298, 389, 394, 460, 619, 741, 1014, 1040
PleI GAGTC 1 cut(s) 826
PluTI GGCGCC 2 cut(s) 270, 876
PpsI GAGTC 1 cut(s) 826
PshAI GACNNNNGTC 1 cut(s) 696
Psp6I CCWGG 2 cut(s) 139, 350
PspFI CCCAGC 1 cut(s) 1041
PspGI CCWGG 2 cut(s) 139, 350
PspN4I GGNNCC 4 cut(s) 268, 443, 874, 1006
PspPI GGNCC 6 cut(s) 348, 442, 498, 1004, 1010, 1050
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 4 cut(s) 147, 251, 729, 777
PvuII CAGCTG 2 cut(s) 620, 1041
SacII CCGCGG 1 cut(s) 672
SalI GTCGAC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 649
SatI GCNGC 8 cut(s) 297, 388, 393, 459, 618, 740, 1013, 1039
Sau3AI GATC 5 cut(s) 85, 147, 251, 729, 777
Sau96I GGNCC 6 cut(s) 348, 442, 498, 1004, 1010, 1050
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 5 cut(s) 141, 343, 352, 1008, 1009
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 2 cut(s) 445, 599
SfoI GGCGCC 2 cut(s) 268, 874
Sfr303I CCGCGG 1 cut(s) 672
SfuI TTCGAA 1 cut(s) 1091
SgrAI CRCCGGYG 1 cut(s) 263
SgrBI CCGCGG 1 cut(s) 672
SinI GGWCC 2 cut(s) 498, 1004
SmaI CCCGGG 1 cut(s) 1009
Sse9I AATT 1 cut(s) 1164
SspDI GGCGCC 2 cut(s) 266, 872
SspMI CTAG 2 cut(s) 1016, 1059
StyD4I CCNGG 5 cut(s) 139, 341, 350, 1006, 1007
TaiI ACGT 1 cut(s) 684
TaqI TCGA 6 cut(s) 422, 537, 771, 782, 816, 1091
TasI AATT 1 cut(s) 1164
TauI GCSGC 3 cut(s) 390, 395, 1015
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 4 cut(s) 116, 121, 721, 910
TseFI GTSAC 3 cut(s) 65, 116, 677
TseI GCWGC 5 cut(s) 296, 458, 617, 739, 1038
Tsp45I GTSAC 3 cut(s) 65, 116, 677
TspDTI ATGAA 6 cut(s) 439, 840, 901, 912, 921, 995
TspMI CCCGGG 1 cut(s) 1007
TspRI CASTG 4 cut(s) 116, 121, 721, 910
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 498, 1004
XmaI CCCGGG 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 422
XspI CTAG 2 cut(s) 1016, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.