Rmu_co8111434.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8111434.1
OG0009113
Physical Location & Seq
Reverse (-)
2 .. 410
409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8111434.1_g000001.1.cds

Sequence Viewer

Length: 409 bp
atgatggaaggaatcaaaggctcaggaggagggaaggttgccattggtgttggcaatggtgttggtcacgaccagattattcaggatcaagacatgggagatggaatgcagtgcagtgaccatccttacagaaacaacccaggtgggatctgcgctttctgtctccaagagaagctcggcaagctcgtctcttcctccttccctctccccgttcgtaactccgcctcttcttcctcctctccttcttttagatctgacatcaccggcgccaccaatgccggcggtgtcagcgtcgccgctccttcctctacctccctctcgctctcgctctcggtccgtcccaaagccaacggcgagtcgtttcatcacgacgagtattacacccggcgggccaggatgtcgttccttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.18

Weight (kDa)

7.77

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 4 cut(s) 222, 282, 297, 388
AclWI GGATC 2 cut(s) 93, 155
AcyI GRCGYC 1 cut(s) 267
AjnI CCWGG 2 cut(s) 139, 392
AluBI AGCT 2 cut(s) 175, 184
AluI AGCT 2 cut(s) 175, 184
Alw26I GTCTC 2 cut(s) 167, 193
AlwI GGATC 2 cut(s) 93, 155
AoxI GGCC 1 cut(s) 390
AspLEI GCGC 2 cut(s) 155, 269
AspS9I GGNCC 2 cut(s) 334, 390
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 266
BccI CCATC 2 cut(s) 95, 129
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 2 cut(s) 141, 394
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 167, 193
BfoI RGCGCY 1 cut(s) 270
BglII AGATCT 1 cut(s) 251
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 3 cut(s) 141, 385, 394
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 334, 390
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 3 cut(s) 141, 385, 394
Bpu10I CCTNAGC 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 385
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bse118I RCCGGY 2 cut(s) 263, 278
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 141, 394
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 121, 402
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 2 cut(s) 42, 226
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 1 cut(s) 392
BshNI GGYRCC 1 cut(s) 266
BsiSI CCGG 3 cut(s) 264, 279, 385
BslFI GGGAC 1 cut(s) 324
BsmAI GTCTC 2 cut(s) 167, 193
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 85, 147, 251
BspACI CCGC 4 cut(s) 222, 282, 297, 388
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 2 cut(s) 93, 155
BspT107I GGYRCC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 263, 278
BssAI RCCGGY 2 cut(s) 263, 278
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 3 cut(s) 85, 147, 251
BssNI GRCGYC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 141, 394
Bst6I CTCTTC 2 cut(s) 196, 232
BstACI GRCGYC 1 cut(s) 267
BstC8I GCNNGC 3 cut(s) 182, 280, 390
BstDEI CTNAG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 121, 402
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 2 cut(s) 155, 269
BstKTI GATC 3 cut(s) 88, 150, 254
BstMAI GTCTC 2 cut(s) 167, 193
BstMBI GATC 3 cut(s) 85, 147, 251
BstMWI GCNNNNNNNGC 3 cut(s) 181, 275, 288
BstNI CCWGG 2 cut(s) 141, 394
BstSCI CCNGG 3 cut(s) 139, 383, 392
BstX2I RGATCY 2 cut(s) 147, 251
BstYI RGATCY 2 cut(s) 147, 251
BsuRI GGCC 1 cut(s) 392
BtsCI GGATG 2 cut(s) 121, 402
BtsI GCAGTG 2 cut(s) 116, 121
BtsIMutI CAGTG 2 cut(s) 116, 121
Cac8I GCNNGC 3 cut(s) 182, 280, 390
CfoI GCGC 2 cut(s) 155, 269
Cfr10I RCCGGY 2 cut(s) 263, 278
Cfr13I GGNCC 2 cut(s) 334, 390
CpoI CGGWCCG 1 cut(s) 334
CseI GACGC 1 cut(s) 280
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CspI CGGWCCG 1 cut(s) 334
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 21, 175, 184, 347, 392
CviKI_1 RGCY 5 cut(s) 21, 175, 184, 347, 392
DdeI CTNAG 1 cut(s) 22
DinI GGCGCC 1 cut(s) 268
DpnI GATC 3 cut(s) 87, 149, 253
DpnII GATC 3 cut(s) 85, 147, 251
Eam1104I CTCTTC 2 cut(s) 196, 232
EarI CTCTTC 2 cut(s) 196, 232
EciI GGCGGA 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 139, 392
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FaqI GGGAC 1 cut(s) 324
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 297
GlaI GCGC 2 cut(s) 154, 268
GluI GCNGC 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 392
HapII CCGG 3 cut(s) 264, 279, 385
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 155, 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 153, 267
HinP1I GCGC 2 cut(s) 153, 267
HinfI GANTC 2 cut(s) 12, 356
HpaII CCGG 3 cut(s) 264, 279, 385
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 5 cut(s) 24, 68, 83, 89, 368
Hpy99I CGWCG 2 cut(s) 296, 374
HpyAV CCTTC 4 cut(s) 28, 208, 252, 312
HpyCH4V TGCA 2 cut(s) 109, 114
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 275, 288
HpyF3I CTNAG 1 cut(s) 22
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 153, 267
KasI GGCGCC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Kzo9I GATC 3 cut(s) 85, 147, 251
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 9 cut(s) 9, 68, 86, 126, 153, 277, 292, 379, 398
MaeIII GTNAC 3 cut(s) 65, 116, 215
MalI GATC 3 cut(s) 87, 149, 253
MbiI CCGCTC 1 cut(s) 299
MboI GATC 3 cut(s) 85, 147, 251
MboII GAAGA 3 cut(s) 183, 219, 222
MflI RGATCY 2 cut(s) 147, 251
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 1 cut(s) 365
MroNI GCCGGC 1 cut(s) 278
MspI CCGG 3 cut(s) 264, 279, 385
MspR9I CCNGG 3 cut(s) 141, 385, 394
Mva1269I GAATGC 1 cut(s) 111
MvaI CCWGG 2 cut(s) 141, 394
MwoI GCNNNNNNNGC 3 cut(s) 181, 275, 288
NaeI GCCGGC 1 cut(s) 280
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 385
NdeII GATC 3 cut(s) 85, 147, 251
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 65, 116
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 364
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 364
Psp6I CCWGG 2 cut(s) 139, 392
PspGI CCWGG 2 cut(s) 139, 392
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 2 cut(s) 334, 390
PsuI RGATCY 2 cut(s) 147, 251
Rsr2I CGGWCCG 1 cut(s) 334
RsrII CGGWCCG 1 cut(s) 334
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 3 cut(s) 85, 147, 251
Sau96I GGNCC 2 cut(s) 334, 390
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 3 cut(s) 141, 385, 394
SetI ASST 5 cut(s) 39, 145, 177, 186, 314
SfoI GGCGCC 1 cut(s) 268
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 334
SsiI CCGC 4 cut(s) 222, 282, 297, 388
SspDI GGCGCC 1 cut(s) 266
StyD4I CCNGG 3 cut(s) 139, 383, 392
TaqII GACCGA 1 cut(s) 322
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 2 cut(s) 116, 121
TseFI GTSAC 2 cut(s) 65, 116
Tsp45I GTSAC 2 cut(s) 65, 116
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 2 cut(s) 116, 121
VpaK11BI GGWCC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.