Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8370611.1

Orthogroup ID

OG0009113

Physical Location & Seq

Genomic Coordinates Reverse (-)

474 .. 1121

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8370611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

tcctcctccttcgcatcttcggccacagcaacaacaacagcagctggaagggacaagtctttgggctcttctctgaggaataaagccgaaaccgcggtgggtgacgttgaagacgacagcagtcccaacagccaagccactgcttcagcctcttcgttcgagcggaaggtctccagatccagatctgtcggctgcggcagccggagcttctccggcgattttttcgagcggatctcgactggtttcggcgactgcactctcagaagggtcgagtctcaaagagaaggcaagcctaaacactcttcatcatcagcagttcgcaacggcgccgagcgtgtcaaatgtggtgggcttttcagtgggttcatgatgacttcatcttcttcatcctcttcgtcttcctcgtattgggtctcctcctcagcggaagacatgaacgggaagccaatatccggtggtcccgggccgctagtcaacgggagaagcaggagcagctggggttgggccttcgctagccccatgagagctttcagcaaaccttcttcgaaagacgggaagagggacattattagacaagcgaatacttcagataagaacaccacccccaacttgtctgcaattccttccttgctatctgtgagaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

22.44

Weight (kDa)

10.14

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06868 AT5G49100
fragaria_vesca	FvH4_4g18460
malus_domestica	MD13G1166900.v1.1 MD16G1166700.v1.1
prunus_persica	Prupe.1G133400_v2.0.a1
pyrus_communis	pycom13g14260 pycom16g14070
rosa_chinensis	RchiOBHm_Chr4g0422951
rosa_laevigata	RLG00000007594
rosa_multiflora	Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365070
rosa_rugosa	Rorug04G0182600
rosa_samantha	Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000
rosa_wichuraiana	Rw4G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccBSI	CCGCTC	2 cut(s)	163, 229
AccII	CGCG	1 cut(s)	95
AciI	CCGC	7 cut(s)	93, 95, 163, 195, 229, 425, 467
AclWI	GGATC	2 cut(s)	171, 239
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	2 cut(s)	129, 570
AcyI	GRCGYC	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	408, 452
AgsI	TTSAA	1 cut(s)	110
AluBI	AGCT	4 cut(s)	44, 207, 495, 527
AluI	AGCT	4 cut(s)	44, 207, 495, 527
Alw26I	GTCTC	3 cut(s)	175, 279, 418
AlwI	GGATC	2 cut(s)	171, 239
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	21, 464, 504
ApeKI	GCWGC	4 cut(s)	41, 192, 198, 492
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	458, 464, 504
AsuC2I	CCSGG	2 cut(s)	462, 463
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	68
BbsI	GAAGAC	3 cut(s)	117, 390, 435
BbvCI	CCTCAGC	1 cut(s)	421
BbvI	GCAGC	4 cut(s)	53, 179, 210, 504
BceAI	ACGGC	1 cut(s)	340
BcnI	CCSGG	2 cut(s)	462, 463
BcoDI	GTCTC	3 cut(s)	175, 279, 418
BfaI	CTAG	2 cut(s)	470, 513
BfoI	RGCGCY	1 cut(s)	330
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	6 cut(s)	42, 193, 196, 199, 467, 493
BlsI	GCNGC	6 cut(s)	43, 194, 197, 200, 468, 494
Bme1390I	CCNGG	2 cut(s)	462, 463
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	458, 464, 504
BmiI	GGNNCC	2 cut(s)	328, 460
BmrFI	CCNGG	2 cut(s)	462, 463
BmsI	GCATC	1 cut(s)	23
BmtI	GCTAGC	1 cut(s)	516
BoxI	GACNNNNGTC	1 cut(s)	120
BpiI	GAAGAC	3 cut(s)	117, 390, 435
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	421
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	2 cut(s)	462, 463
BsaBI	GATNNNNATC	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	2 cut(s)	175, 418
BsaJI	CCNNGG	2 cut(s)	93, 461
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 452
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	93, 461
BseGI	GGATG	1 cut(s)	386
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	408, 452
BseMII	CTCAG	3 cut(s)	65, 274, 435
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	406, 409
BseXI	GCAGC	4 cut(s)	53, 179, 210, 504
BseYI	CCCAGC	1 cut(s)	495
BsgI	GTGCAG	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	3 cut(s)	23, 466, 506
BshNI	GGYRCC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	4 cut(s)	202, 213, 453, 462
BslFI	GGGAC	4 cut(s)	65, 108, 444, 575
BslI	CCNNNNNNNGG	2 cut(s)	408, 452
BsmAI	GTCTC	3 cut(s)	175, 279, 418
BsmFI	GGGAC	4 cut(s)	65, 108, 444, 575
BsnI	GGCC	3 cut(s)	23, 466, 506
Bso31I	GGTCTC	2 cut(s)	175, 418
BsoBI	CYCGRG	1 cut(s)	461
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	176, 182, 231
BspACI	CCGC	7 cut(s)	93, 95, 163, 195, 229, 425, 467
BspANI	GGCC	3 cut(s)	23, 466, 506
BspCNI	CTCAG	3 cut(s)	66, 273, 434
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	328, 460
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	171, 239
BspQI	GCTCTTC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	2 cut(s)	175, 418
BsrBI	CCGCTC	2 cut(s)	163, 229
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	93, 461
BssMI	GATC	3 cut(s)	176, 182, 231
BssNI	GRCGYC	1 cut(s)	327
Bst6I	CTCTTC	5 cut(s)	73, 157, 307, 397, 551
BstACI	GRCGYC	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	290, 514
BstDEI	CTNAG	3 cut(s)	74, 260, 421
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	386
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	3 cut(s)	179, 185, 234
BstMAI	GTCTC	3 cut(s)	175, 279, 418
BstMBI	GATC	3 cut(s)	176, 182, 231
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 92, 198, 204, 213, 492
BstPAI	GACNNNNGTC	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	460, 461
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	53, 179, 210, 504
BstV2I	GAAGAC	3 cut(s)	117, 390, 435
BstX2I	RGATCY	3 cut(s)	176, 182, 231
BstYI	RGATCY	3 cut(s)	176, 182, 231
BsuRI	GGCC	3 cut(s)	23, 466, 506
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	386
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 364
Cac8I	GCNNGC	2 cut(s)	290, 514
CaiI	CAGNNNCTG	1 cut(s)	44
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	3 cut(s)	458, 464, 504
Cfr42I	CCGCGG	1 cut(s)	96
Cfr9I	CCCGGG	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	3 cut(s)	367, 433, 520
DdeI	CTNAG	3 cut(s)	74, 260, 421
DinI	GGCGCC	1 cut(s)	328
DpnI	GATC	3 cut(s)	178, 184, 233
DpnII	GATC	3 cut(s)	176, 182, 231
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	5 cut(s)	73, 157, 307, 397, 551
EarI	CTCTTC	5 cut(s)	73, 157, 307, 397, 551
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	2 cut(s)	175, 418
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	129, 570
Eco88I	CYCGRG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	68
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
FaeI	CATG	3 cut(s)	370, 436, 523
FaiI	YATR	3 cut(s)	368, 434, 521
FaqI	GGGAC	4 cut(s)	65, 108, 444, 575
FatI	CATG	3 cut(s)	366, 432, 519
Fnu4HI	GCNGC	6 cut(s)	42, 193, 196, 199, 467, 493
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	6 cut(s)	42, 193, 196, 199, 467, 493
FspBI	CTAG	2 cut(s)	470, 513
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	6 cut(s)	42, 193, 196, 199, 467, 493
GsaI	CCCAGC	1 cut(s)	499
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	23, 466, 506
HapII	CCGG	4 cut(s)	202, 213, 453, 462
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	370, 436, 523
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	4 cut(s)	202, 213, 453, 462
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	75, 263, 589
Hpy188III	TCNNGA	4 cut(s)	174, 180, 235, 367
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	8 cut(s)	19, 42, 160, 258, 278, 517, 549, 633
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	255, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 92, 198, 204, 213, 492
HpyF3I	CTNAG	3 cut(s)	74, 260, 421
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	370, 436, 523
HspAI	GCGC	1 cut(s)	327
KasI	GGCGCC	1 cut(s)	326
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	176, 182, 231
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	204, 489
Lsp1109I	GCAGC	4 cut(s)	53, 179, 210, 504
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	470, 513
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	178, 184, 233
MbiI	CCGCTC	2 cut(s)	163, 229
MboI	GATC	3 cut(s)	176, 182, 231
MflI	RGATCY	3 cut(s)	176, 182, 231
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	618
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	281
MspA1I	CMGCKG	4 cut(s)	44, 95, 425, 495
MspI	CCGG	4 cut(s)	202, 213, 453, 462
MspR9I	CCNGG	2 cut(s)	462, 463
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	6 cut(s)	20, 92, 198, 204, 213, 492
NarI	GGCGCC	1 cut(s)	327
NciI	CCSGG	2 cut(s)	462, 463
NdeII	GATC	3 cut(s)	176, 182, 231
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	370, 436, 523
NlaIV	GGNNCC	2 cut(s)	328, 460
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	545
PagI	TCATGA	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 401
PkrI	GCNGC	6 cut(s)	43, 194, 197, 200, 468, 494
PleI	GAGTC	1 cut(s)	280
PluTI	GGCGCC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	280
PshAI	GACNNNNGTC	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	495
PspN4I	GGNNCC	2 cut(s)	328, 460
PspPI	GGNCC	3 cut(s)	458, 464, 504
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	3 cut(s)	176, 182, 231
PvuII	CAGCTG	2 cut(s)	44, 495
SacII	CCGCGG	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	73
SatI	GCNGC	6 cut(s)	42, 193, 196, 199, 467, 493
Sau3AI	GATC	3 cut(s)	176, 182, 231
Sau96I	GGNCC	3 cut(s)	458, 464, 504
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	462, 463
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	8 cut(s)	46, 108, 171, 209, 497, 529, 541, 646
SfaNI	GCATC	1 cut(s)	23
SfoI	GGCGCC	1 cut(s)	328
Sfr303I	CCGCGG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	545
SgrBI	CCGCGG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	458
SmaI	CCCGGG	1 cut(s)	463
Sse9I	AATT	1 cut(s)	618
SsiI	CCGC	7 cut(s)	93, 95, 163, 195, 229, 425, 467
SspDI	GGCGCC	1 cut(s)	326
SspMI	CTAG	2 cut(s)	470, 513
StyD4I	CCNGG	2 cut(s)	460, 461
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	5 cut(s)	159, 225, 236, 270, 545
TasI	AATT	1 cut(s)	618
TauI	GCSGC	2 cut(s)	198, 469
TscAI	CASTG	2 cut(s)	145, 364
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	41, 192, 198, 492
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	294, 355, 366, 375, 449
TspMI	CCCGGG	1 cut(s)	461
TspRI	CASTG	2 cut(s)	145, 364
VpaK11BI	GGWCC	1 cut(s)	458
XmaI	CCCGGG	1 cut(s)	461
XspI	CTAG	2 cut(s)	470, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.