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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06868 AT5G49100 |
| fragaria_vesca | FvH4_4g18460 |
| malus_domestica | MD13G1166900.v1.1 MD16G1166700.v1.1 |
| prunus_persica | Prupe.1G133400_v2.0.a1 |
| pyrus_communis | pycom13g14260 pycom16g14070 |
| rosa_chinensis | RchiOBHm_Chr4g0422951 |
| rosa_laevigata | RLG00000007594 |
| rosa_multiflora | Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00365070 |
| rosa_rugosa | Rorug04G0182600 |
| rosa_samantha | Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000 |
| rosa_wichuraiana | Rw4G020910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 70 |
| Acc36I | ACCTGC | 1 cut(s) | 70 |
| AccB1I | GGYRCC | 1 cut(s) | 965 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 526 |
| AccBSI | CCGCTC | 2 cut(s) | 808, 874 |
| AccI | GTMKAC | 1 cut(s) | 497 |
| AccII | CGCG | 3 cut(s) | 390, 465, 470 |
| AciI | CCGC | 9 cut(s) | 228, 288, 463, 468, 470, 808, 840, 874, 1116 |
| AclWI | GGATC | 5 cut(s) | 20, 99, 161, 816, 884 |
| AcoI | YGGCCR | 1 cut(s) | 411 |
| AcsI | RAATTY | 1 cut(s) | 542 |
| AcuI | CTGAAG | 2 cut(s) | 933, 1209 |
| AcyI | GRCGYC | 2 cut(s) | 506, 966 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 469, 526, 1047 |
| AgsI | TTSAA | 2 cut(s) | 484, 755 |
| AjnI | CCWGG | 3 cut(s) | 145, 392, 413 |
| AluBI | AGCT | 8 cut(s) | 181, 190, 347, 624, 689, 852, 1134, 1166 |
| AluI | AGCT | 8 cut(s) | 181, 190, 347, 624, 689, 852, 1134, 1166 |
| Alw26I | GTCTC | 6 cut(s) | 173, 199, 624, 820, 924, 1057 |
| AlwI | GGATC | 5 cut(s) | 20, 99, 161, 816, 884 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 689 |
| Ama87I | CYCGRG | 1 cut(s) | 1097 |
| AoxI | GGCC | 2 cut(s) | 411, 1143 |
| ApeKI | GCWGC | 6 cut(s) | 533, 686, 765, 837, 843, 1131 |
| ApoI | RAATTY | 1 cut(s) | 542 |
| AscI | GGCGCGCC | 1 cut(s) | 388 |
| AspLEI | GCGC | 7 cut(s) | 161, 275, 390, 392, 467, 968, 1105 |
| AspS9I | GGNCC | 4 cut(s) | 305, 334, 1094, 1143 |
| AsuC2I | CCSGG | 3 cut(s) | 385, 1098, 1099 |
| AsuHPI | GGTGA | 5 cut(s) | 94, 259, 365, 458, 758 |
| AsuII | TTCGAA | 2 cut(s) | 958, 1184 |
| AsuNHI | GCTAGC | 2 cut(s) | 275, 1151 |
| AvaI | CYCGRG | 1 cut(s) | 1097 |
| AvaII | GGWCC | 3 cut(s) | 305, 334, 1094 |
| BalI | TGGCCA | 1 cut(s) | 413 |
| BanI | GGYRCC | 1 cut(s) | 965 |
| BbsI | GAAGAC | 5 cut(s) | 705, 762, 1023, 1029, 1071 |
| BbvCI | CCTCAGC | 1 cut(s) | 790 |
| BbvI | GCAGC | 6 cut(s) | 520, 698, 777, 824, 855, 1143 |
| BccI | CCATC | 2 cut(s) | 101, 135 |
| BceAI | ACGGC | 2 cut(s) | 725, 979 |
| BciT130I | CCWGG | 3 cut(s) | 147, 394, 415 |
| BcnI | CCSGG | 3 cut(s) | 385, 1098, 1099 |
| BcoDI | GTCTC | 6 cut(s) | 173, 199, 624, 820, 924, 1057 |
| BfaI | CTAG | 3 cut(s) | 276, 1106, 1152 |
| BfmI | CTRYAG | 1 cut(s) | 831 |
| BfoI | RGCGCY | 3 cut(s) | 276, 969, 1106 |
| BfuAI | ACCTGC | 1 cut(s) | 70 |
| BglII | AGATCT | 2 cut(s) | 257, 827 |
| Bme1390I | CCNGG | 6 cut(s) | 147, 385, 394, 415, 1098, 1099 |
| Bme18I | GGWCC | 3 cut(s) | 305, 334, 1094 |
| BmeT110I | CYCGRG | 1 cut(s) | 1097 |
| BmgT120I | GGNCC | 4 cut(s) | 305, 334, 1094, 1143 |
| BmiI | GGNNCC | 3 cut(s) | 518, 967, 1096 |
| BmrFI | CCNGG | 6 cut(s) | 147, 385, 394, 415, 1098, 1099 |
| BmsI | GCATC | 1 cut(s) | 520 |
| BmtI | GCTAGC | 2 cut(s) | 279, 1155 |
| BpiI | GAAGAC | 5 cut(s) | 705, 762, 1023, 1029, 1071 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 863, 895 |
| BpmI | CTGGAG | 1 cut(s) | 802 |
| Bpu10I | CCTNAGC | 2 cut(s) | 22, 790 |
| Bpu14I | TTCGAA | 2 cut(s) | 958, 1184 |
| BpuMI | CCSGG | 3 cut(s) | 385, 1098, 1099 |
| BsaBI | GATNNNNATC | 1 cut(s) | 826 |
| BsaHI | GRCGYC | 2 cut(s) | 506, 966 |
| BsaI | GGTCTC | 1 cut(s) | 1057 |
| BsaJI | CCNNGG | 7 cut(s) | 145, 468, 509, 741, 1097, 1098, 1111 |
| BsaWI | WCCGGW | 1 cut(s) | 1088 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 27, 57 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 469, 526, 1047 |
| Bse118I | RCCGGY | 3 cut(s) | 269, 284, 302 |
| Bse1I | ACTGG | 1 cut(s) | 889 |
| Bse3DI | GCAATG | 2 cut(s) | 67, 286 |
| Bse8I | GATNNNNATC | 1 cut(s) | 826 |
| BseBI | CCWGG | 3 cut(s) | 147, 394, 415 |
| BseDI | CCNNGG | 7 cut(s) | 145, 468, 509, 741, 1097, 1098, 1111 |
| BseGI | GGATG | 3 cut(s) | 127, 402, 535 |
| BseJI | GATNNNNATC | 1 cut(s) | 826 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 469, 526, 1047 |
| BseMI | GCAATG | 2 cut(s) | 67, 286 |
| BseMII | CTCAG | 2 cut(s) | 804, 919 |
| BseNI | ACTGG | 1 cut(s) | 889 |
| BsePI | GCGCGC | 1 cut(s) | 388 |
| BseRI | GAGGAG | 7 cut(s) | 48, 502, 526, 529, 640, 643, 646 |
| BseXI | GCAGC | 6 cut(s) | 520, 698, 777, 824, 855, 1143 |
| BseYI | CCCAGC | 2 cut(s) | 689, 1134 |
| BsgI | GTGCAG | 2 cut(s) | 139, 883 |
| Bsh1236I | CGCG | 3 cut(s) | 390, 465, 470 |
| BshFI | GGCC | 2 cut(s) | 413, 1145 |
| BshNI | GGYRCC | 1 cut(s) | 965 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1097 |
| BsiSI | CCGG | 8 cut(s) | 270, 285, 303, 385, 847, 858, 1089, 1098 |
| BslFI | GGGAC | 3 cut(s) | 710, 1080, 1214 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 469, 526, 1047 |
| BsmAI | GTCTC | 6 cut(s) | 173, 199, 624, 820, 924, 1057 |
| BsmBI | CGTCTC | 1 cut(s) | 199 |
| BsmFI | GGGAC | 3 cut(s) | 710, 1080, 1214 |
| BsmI | GAATGC | 1 cut(s) | 117 |
| BsnI | GGCC | 2 cut(s) | 413, 1145 |
| Bso31I | GGTCTC | 1 cut(s) | 1057 |
| BsoBI | CYCGRG | 1 cut(s) | 1097 |
| Bsp119I | TTCGAA | 2 cut(s) | 958, 1184 |
| Bsp143I | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| BspACI | CCGC | 9 cut(s) | 228, 288, 463, 468, 470, 808, 840, 874, 1116 |
| BspANI | GGCC | 2 cut(s) | 413, 1145 |
| BspCNI | CTCAG | 2 cut(s) | 803, 918 |
| BspFNI | CGCG | 3 cut(s) | 390, 465, 470 |
| BspHI | TCATGA | 3 cut(s) | 73, 367, 1005 |
| BspLI | GGNNCC | 3 cut(s) | 518, 967, 1096 |
| BspMI | ACCTGC | 1 cut(s) | 70 |
| BspOI | GCTAGC | 2 cut(s) | 279, 1155 |
| BspPI | GGATC | 5 cut(s) | 20, 99, 161, 816, 884 |
| BspT104I | TTCGAA | 2 cut(s) | 958, 1184 |
| BspT107I | GGYRCC | 1 cut(s) | 965 |
| BspTNI | GGTCTC | 1 cut(s) | 1057 |
| BsrBI | CCGCTC | 2 cut(s) | 808, 874 |
| BsrDI | GCAATG | 2 cut(s) | 67, 286 |
| BsrFI | RCCGGY | 3 cut(s) | 269, 284, 302 |
| BsrI | ACTGG | 1 cut(s) | 889 |
| BssAI | RCCGGY | 3 cut(s) | 269, 284, 302 |
| BssECI | CCNNGG | 7 cut(s) | 145, 468, 509, 741, 1097, 1098, 1111 |
| BssHII | GCGCGC | 1 cut(s) | 388 |
| BssMI | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| BssNI | GRCGYC | 2 cut(s) | 506, 966 |
| BssT1I | CCWWGG | 1 cut(s) | 1111 |
| Bst2UI | CCWGG | 3 cut(s) | 147, 394, 415 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| Bst6I | CTCTTC | 6 cut(s) | 202, 238, 802, 952, 1186, 1190 |
| BstACI | GRCGYC | 2 cut(s) | 506, 966 |
| BstBI | TTCGAA | 2 cut(s) | 958, 1184 |
| BstC8I | GCNNGC | 6 cut(s) | 188, 277, 286, 390, 935, 1153 |
| BstDEI | CTNAG | 3 cut(s) | 22, 790, 905 |
| BstDSI | CCRYGG | 2 cut(s) | 468, 741 |
| BstF5I | GGATG | 3 cut(s) | 127, 402, 535 |
| BstFNI | CGCG | 3 cut(s) | 390, 465, 470 |
| BstH2I | RGCGCY | 3 cut(s) | 276, 969, 1106 |
| BstHHI | GCGC | 7 cut(s) | 161, 275, 390, 392, 467, 968, 1105 |
| BstKTI | GATC | 7 cut(s) | 15, 94, 156, 260, 824, 830, 879 |
| BstMAI | GTCTC | 6 cut(s) | 173, 199, 624, 820, 924, 1057 |
| BstMBI | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| BstNI | CCWGG | 3 cut(s) | 147, 394, 415 |
| BstSCI | CCNGG | 6 cut(s) | 145, 383, 392, 413, 1096, 1097 |
| BstSFI | CTRYAG | 1 cut(s) | 831 |
| BstUI | CGCG | 3 cut(s) | 390, 465, 470 |
| BstV1I | GCAGC | 6 cut(s) | 520, 698, 777, 824, 855, 1143 |
| BstV2I | GAAGAC | 5 cut(s) | 705, 762, 1023, 1029, 1071 |
| BstX2I | RGATCY | 5 cut(s) | 153, 257, 821, 827, 876 |
| BstYI | RGATCY | 5 cut(s) | 153, 257, 821, 827, 876 |
| BsuRI | GGCC | 2 cut(s) | 413, 1145 |
| BtgI | CCRYGG | 2 cut(s) | 468, 741 |
| BtsCI | GGATG | 3 cut(s) | 127, 402, 535 |
| BtsI | GCAGTG | 2 cut(s) | 122, 127 |
| BtsIMutI | CAGTG | 3 cut(s) | 122, 127, 1003 |
| BveI | ACCTGC | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 6 cut(s) | 188, 277, 286, 390, 935, 1153 |
| CaiI | CAGNNNCTG | 1 cut(s) | 689 |
| CciI | TCATGA | 3 cut(s) | 73, 367, 1005 |
| CfoI | GCGC | 7 cut(s) | 161, 275, 390, 392, 467, 968, 1105 |
| Cfr10I | RCCGGY | 3 cut(s) | 269, 284, 302 |
| Cfr13I | GGNCC | 4 cut(s) | 305, 334, 1094, 1143 |
| Cfr42I | CCGCGG | 1 cut(s) | 471 |
| Cfr9I | CCCGGG | 1 cut(s) | 1097 |
| CpoI | CGGWCCG | 1 cut(s) | 334 |
| CseI | GACGC | 1 cut(s) | 514 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 130, 165, 967, 1002 |
| CspI | CGGWCCG | 1 cut(s) | 334 |
| CviAII | CATG | 7 cut(s) | 74, 100, 368, 526, 1006, 1069, 1159 |
| DdeI | CTNAG | 3 cut(s) | 22, 790, 905 |
| DinI | GGCGCC | 1 cut(s) | 967 |
| DpnI | GATC | 7 cut(s) | 14, 93, 155, 259, 823, 829, 878 |
| DpnII | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| EaeI | YGGCCR | 1 cut(s) | 411 |
| Eam1104I | CTCTTC | 6 cut(s) | 202, 238, 802, 952, 1186, 1190 |
| EarI | CTCTTC | 6 cut(s) | 202, 238, 802, 952, 1186, 1190 |
| EciI | GGCGGA | 1 cut(s) | 217 |
| Eco130I | CCWWGG | 1 cut(s) | 1111 |
| Eco31I | GGTCTC | 1 cut(s) | 1057 |
| Eco47I | GGWCC | 3 cut(s) | 305, 334, 1094 |
| Eco57I | CTGAAG | 2 cut(s) | 933, 1209 |
| Eco88I | CYCGRG | 1 cut(s) | 1097 |
| EcoRII | CCWGG | 3 cut(s) | 145, 392, 413 |
| EcoT14I | CCWWGG | 1 cut(s) | 1111 |
| EgeI | GGCGCC | 1 cut(s) | 967 |
| EheI | GGCGCC | 1 cut(s) | 967 |
| ErhI | CCWWGG | 1 cut(s) | 1111 |
| Esp3I | CGTCTC | 1 cut(s) | 199 |
| FaeI | CATG | 7 cut(s) | 77, 103, 371, 529, 1009, 1072, 1162 |
| FaiI | YATR | 8 cut(s) | 75, 101, 369, 476, 527, 1007, 1070, 1160 |
| FaqI | GGGAC | 3 cut(s) | 710, 1080, 1214 |
| FatI | CATG | 7 cut(s) | 73, 99, 367, 525, 1005, 1068, 1158 |
| FblI | GTMKAC | 1 cut(s) | 497 |
| FokI | GGATG | 3 cut(s) | 114, 409, 542 |
| FspBI | CTAG | 3 cut(s) | 276, 1106, 1152 |
| GlaI | GCGC | 7 cut(s) | 160, 274, 389, 391, 466, 967, 1104 |
| GsaI | CCCAGC | 2 cut(s) | 693, 1138 |
| GsuI | CTGGAG | 1 cut(s) | 802 |
| HaeII | RGCGCY | 3 cut(s) | 276, 969, 1106 |
| HaeIII | GGCC | 2 cut(s) | 413, 1145 |
| HapII | CCGG | 8 cut(s) | 270, 285, 303, 385, 847, 858, 1089, 1098 |
| HgaI | GACGC | 1 cut(s) | 514 |
| HhaI | GCGC | 7 cut(s) | 161, 275, 390, 392, 467, 968, 1105 |
| Hin1I | GRCGYC | 2 cut(s) | 506, 966 |
| Hin1II | CATG | 7 cut(s) | 77, 103, 371, 529, 1009, 1072, 1162 |
| Hin6I | GCGC | 7 cut(s) | 159, 273, 388, 390, 465, 966, 1103 |
| HinP1I | GCGC | 7 cut(s) | 159, 273, 388, 390, 465, 966, 1103 |
| HincII | GTYRAC | 1 cut(s) | 498 |
| HindII | GTYRAC | 1 cut(s) | 498 |
| HindIII | AAGCTT | 1 cut(s) | 622 |
| HinfI | GANTC | 3 cut(s) | 85, 356, 917 |
| HpaII | CCGG | 8 cut(s) | 270, 285, 303, 385, 847, 858, 1089, 1098 |
| HphI | GGTGA | 5 cut(s) | 94, 259, 365, 458, 758 |
| Hpy166II | GTNNAC | 2 cut(s) | 498, 663 |
| Hpy188I | TCNGA | 6 cut(s) | 137, 262, 342, 629, 908, 1228 |
| Hpy188III | TCNNGA | 9 cut(s) | 74, 89, 95, 368, 484, 819, 825, 880, 1006 |
| Hpy8I | GTNNAC | 2 cut(s) | 498, 663 |
| Hpy99I | CGWCG | 1 cut(s) | 508 |
| HpyAV | CCTTC | 8 cut(s) | 34, 214, 258, 318, 903, 923, 1156, 1272 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4V | TGCA | 5 cut(s) | 115, 120, 674, 900, 1256 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 790, 905 |
| Hsp92I | GRCGYC | 2 cut(s) | 506, 966 |
| Hsp92II | CATG | 7 cut(s) | 77, 103, 371, 529, 1009, 1072, 1162 |
| HspAI | GCGC | 7 cut(s) | 159, 273, 388, 390, 465, 966, 1103 |
| KasI | GGCGCC | 1 cut(s) | 965 |
| KroI | GCCGGC | 1 cut(s) | 284 |
| KroNI | GCCGGC | 1 cut(s) | 286 |
| KspI | CCGCGG | 1 cut(s) | 471 |
| Kzo9I | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| LmnI | GCTCC | 4 cut(s) | 489, 516, 849, 1128 |
| Lsp1109I | GCAGC | 6 cut(s) | 520, 698, 777, 824, 855, 1143 |
| LweI | GCATC | 1 cut(s) | 520 |
| MaeI | CTAG | 3 cut(s) | 276, 1106, 1152 |
| MaeIII | GTNAC | 4 cut(s) | 122, 221, 430, 455 |
| MalI | GATC | 7 cut(s) | 14, 93, 155, 259, 823, 829, 878 |
| MbiI | CCGCTC | 2 cut(s) | 808, 874 |
| MboI | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| MflI | RGATCY | 5 cut(s) | 153, 257, 821, 827, 876 |
| MlsI | TGGCCA | 1 cut(s) | 413 |
| MluCI | AATT | 2 cut(s) | 542, 1257 |
| MluNI | TGGCCA | 1 cut(s) | 413 |
| Mly113I | GGCGCC | 1 cut(s) | 966 |
| MlyI | GAGTC | 2 cut(s) | 365, 926 |
| Mox20I | TGGCCA | 1 cut(s) | 413 |
| MroNI | GCCGGC | 1 cut(s) | 284 |
| MscI | TGGCCA | 1 cut(s) | 413 |
| MseI | TTAA | 2 cut(s) | 363, 719 |
| Msp20I | TGGCCA | 1 cut(s) | 413 |
| MspA1I | CMGCKG | 3 cut(s) | 470, 689, 1134 |
| MspI | CCGG | 8 cut(s) | 270, 285, 303, 385, 847, 858, 1089, 1098 |
| MspR9I | CCNGG | 6 cut(s) | 147, 385, 394, 415, 1098, 1099 |
| Mva1269I | GAATGC | 1 cut(s) | 117 |
| MvaI | CCWGG | 3 cut(s) | 147, 394, 415 |
| MvnI | CGCG | 3 cut(s) | 390, 465, 470 |
| NaeI | GCCGGC | 1 cut(s) | 286 |
| NarI | GGCGCC | 1 cut(s) | 966 |
| NciI | CCSGG | 3 cut(s) | 385, 1098, 1099 |
| NdeII | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| NgoMIV | GCCGGC | 1 cut(s) | 284 |
| NheI | GCTAGC | 2 cut(s) | 275, 1151 |
| NlaIII | CATG | 7 cut(s) | 77, 103, 371, 529, 1009, 1072, 1162 |
| NlaIV | GGNNCC | 3 cut(s) | 518, 967, 1096 |
| NmeAIII | GCCGAG | 3 cut(s) | 162, 534, 994 |
| NmuCI | GTSAC | 3 cut(s) | 122, 430, 455 |
| NspV | TTCGAA | 2 cut(s) | 958, 1184 |
| PagI | TCATGA | 3 cut(s) | 73, 367, 1005 |
| PalAI | GGCGCGCC | 1 cut(s) | 388 |
| PaqCI | CACCTGC | 1 cut(s) | 70 |
| PauI | GCGCGC | 1 cut(s) | 388 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 189, 338 |
| PctI | GAATGC | 1 cut(s) | 117 |
| PdiI | GCCGGC | 1 cut(s) | 286 |
| PfeI | GAWTC | 1 cut(s) | 85 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 526 |
| PleI | GAGTC | 2 cut(s) | 364, 925 |
| PluTI | GGCGCC | 1 cut(s) | 969 |
| PpsI | GAGTC | 2 cut(s) | 364, 925 |
| Psp6I | CCWGG | 3 cut(s) | 145, 392, 413 |
| PspFI | CCCAGC | 2 cut(s) | 689, 1134 |
| PspGI | CCWGG | 3 cut(s) | 145, 392, 413 |
| PspN4I | GGNNCC | 3 cut(s) | 518, 967, 1096 |
| PspPI | GGNCC | 4 cut(s) | 305, 334, 1094, 1143 |
| PstNI | CAGNNNCTG | 1 cut(s) | 689 |
| PsuI | RGATCY | 5 cut(s) | 153, 257, 821, 827, 876 |
| PteI | GCGCGC | 1 cut(s) | 388 |
| PvuII | CAGCTG | 2 cut(s) | 689, 1134 |
| Rsr2I | CGGWCCG | 1 cut(s) | 334 |
| RsrII | CGGWCCG | 1 cut(s) | 334 |
| SacII | CCGCGG | 1 cut(s) | 471 |
| SalI | GTCGAC | 1 cut(s) | 496 |
| SaqAI | TTAA | 2 cut(s) | 363, 719 |
| Sau3AI | GATC | 7 cut(s) | 12, 91, 153, 257, 821, 827, 876 |
| Sau96I | GGNCC | 4 cut(s) | 305, 334, 1094, 1143 |
| SchI | GAGTC | 2 cut(s) | 365, 926 |
| ScrFI | CCNGG | 6 cut(s) | 147, 385, 394, 415, 1098, 1099 |
| SfaNI | GCATC | 1 cut(s) | 520 |
| SfcI | CTRYAG | 1 cut(s) | 831 |
| SfoI | GGCGCC | 1 cut(s) | 967 |
| Sfr303I | CCGCGG | 1 cut(s) | 471 |
| SfuI | TTCGAA | 2 cut(s) | 958, 1184 |
| SgrAI | CRCCGGYG | 1 cut(s) | 269 |
| SgrBI | CCGCGG | 1 cut(s) | 471 |
| SgsI | GGCGCGCC | 1 cut(s) | 388 |
| SinI | GGWCC | 3 cut(s) | 305, 334, 1094 |
| SmaI | CCCGGG | 1 cut(s) | 1099 |
| Sse9I | AATT | 2 cut(s) | 542, 1257 |
| SsiI | CCGC | 9 cut(s) | 228, 288, 463, 468, 470, 808, 840, 874, 1116 |
| SspDI | GGCGCC | 1 cut(s) | 965 |
| SspMI | CTAG | 3 cut(s) | 276, 1106, 1152 |
| StyD4I | CCNGG | 6 cut(s) | 145, 383, 392, 413, 1096, 1097 |
| StyI | CCWWGG | 1 cut(s) | 1111 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaqI | TCGA | 7 cut(s) | 497, 612, 804, 870, 881, 958, 1184 |
| TaqII | GACCGA | 1 cut(s) | 322 |
| TasI | AATT | 2 cut(s) | 542, 1257 |
| TauI | GCSGC | 4 cut(s) | 465, 470, 843, 1119 |
| TfiI | GAWTC | 1 cut(s) | 85 |
| Tru1I | TTAA | 2 cut(s) | 363, 719 |
| Tru9I | TTAA | 2 cut(s) | 363, 719 |
| TscAI | CASTG | 3 cut(s) | 122, 127, 1003 |
| TseFI | GTSAC | 3 cut(s) | 122, 430, 455 |
| TseI | GCWGC | 6 cut(s) | 533, 686, 765, 837, 843, 1131 |
| Tsp45I | GTSAC | 3 cut(s) | 122, 430, 455 |
| TspDTI | ATGAA | 6 cut(s) | 514, 555, 994, 1005, 1014, 1085 |
| TspGWI | ACGGA | 1 cut(s) | 326 |
| TspMI | CCCGGG | 1 cut(s) | 1097 |
| TspRI | CASTG | 3 cut(s) | 122, 127, 1003 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 526 |
| VpaK11BI | GGWCC | 3 cut(s) | 305, 334, 1094 |
| XapI | RAATTY | 1 cut(s) | 542 |
| XmaI | CCCGGG | 1 cut(s) | 1097 |
| XmiI | GTMKAC | 1 cut(s) | 497 |
| XspI | CTAG | 3 cut(s) | 276, 1106, 1152 |