MD13G1166900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
13414643 .. 13415923
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1166900.v1.1.491

Sequence Viewer

Length: 1281 bp
ATGAATGCTGTGGCTGATCAAGATCAAGACATGGGAGATGGAATGCAGTGCAGTGACCATCCATACAGAAGCAACCCAGGTGGGATCTGCGCTTTCTGCCTCCAGGAGAAGCTCGGCAAGCTTGTTTCTTCCTCCTTCCCTCTCCCCATCCACGCTCCTGCAACCTCCTCTTCTTCCTCCCCTTCTTTTAGATCTGATAGTATTAACGGCGGCAATGGAGCTGCTGCTGCTGCTGGTCCTTCTTCCTCCGCCGCCTCCCTCGCCCTCTCGCTCTCCGTCCACCCAACTTCTTCGTCATCGGTAAAACCCAGAAGCATTGGTAGTAATTTTCGCCACGAGGATGAGTTTTATAACACGAGGAGGGCCAGGATTTCTTTTCTTTTGGCTAAGAAGAAGAAGAAAGTGAGTGACGGTGCTGCTACTACTGGTGCCGGTGCTGCTACTGTTGTATCTTCCGATAGGGAAGCTGCTAACATGGTGTTCAAGCGGAGCAAGTCTACGACCAACCCGCGGCGGGGCCACCATTTTCTGGATGGTTCAGAGGATTTTAGTCCAAGGAAGAGAGGCGGGTTCTGGTCGTTTCTGTATCACTCCTCCACCAAGAACTCGTCACACGCTCTTAACAAGAAGACAATGGATAAGTCCAGCTTCAGAGACAACTCCACCTCCAAGATCTCTTCCTCTTCCTCCTTCACATCCGCCCAAAAGGACTCCAAAAGCTTCGGGTCTTCTTCTCTGAGGAATAGAAGCGAACTGGCGGTCGACGCGGACGACGACAGCAACAGCCCAAACAGCAGTCAAGCAACCGCCGCCTCGGCCTCCTCCTTCGAGCGGAAAGTCTCGAGATCCAGATCCGTCGGCTGCGGAAGCCGAAGCTTCTCCGGCGACTTCTTCGAGCGAATCTCAACTGGGTTCGGCGACTGCACTCTCAGAAGAGTCGAGTCGCAAAGAGAAGGCAAGCCCAAAGCAGCCCACCGCGGTGGCGAACACAACCACTGCATGAAAGAGCGAGTGAAATGCGGCGGGATTTTCAGTGGTTTCATGATGACGTCCTCGTCTTCGTCGTCGTCGTCCTCGTCTTACTGGGTTTCGTCCTCCGCCGAAGGGCCCCTCGTCCACGGCCGTAACCGGAGCTGGGGGTGGGCGTTTGCGAGTCCGATGAGAGCATTCACCAAACCTTCTTCTAAAGATGGGAAGAGGGACATAGTTAGACAAGCTTCAGATAAGAACACAGCTCCAAACTTGAATGCGATTCCTTCCTTGCTATCAGTCAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

45.4

Weight (kDa)

9.94

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AasI GACNNNNNNGTC 1 cut(s) 1054
AatII GACGTC 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 832
AccI GTMKAC 2 cut(s) 497, 762
AccII CGCG 3 cut(s) 511, 767, 978
AclWI GGATC 3 cut(s) 92, 840, 846
AcoI YGGCCR 1 cut(s) 1120
AcuI CTGAAG 2 cut(s) 634, 1203
AcyI GRCGYC 1 cut(s) 1049
AfiI CCNNNNNNNGG 7 cut(s) 510, 514, 515, 529, 831, 1104, 1135
AgsI TTSAA 2 cut(s) 484, 1246
AjnI CCWGG 3 cut(s) 76, 102, 365
AleI CACNNNNGTG 1 cut(s) 978
Alw26I GTCTC 2 cut(s) 648, 844
AlwI GGATC 3 cut(s) 92, 840, 846
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 5 cut(s) 363, 517, 816, 1106, 1120
ApaI GGGCCC 1 cut(s) 1110
ApeKI GCWGC 9 cut(s) 221, 224, 227, 230, 416, 437, 467, 861, 968
ArsI GACNNNNNNTTYG 2 cut(s) 744, 776
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 5 cut(s) 236, 363, 517, 1106, 1107
AsuHPI GGTGA 1 cut(s) 1162
AvaI CYCGRG 1 cut(s) 841
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 1110
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 1110
BauI CACGAG 2 cut(s) 335, 355
BbsI GAAGAC 3 cut(s) 635, 720, 1050
BbvI GCAGC 9 cut(s) 208, 211, 214, 217, 403, 424, 454, 848, 980
BccI CCATC 5 cut(s) 32, 66, 155, 527, 1184
BceAI ACGGC 3 cut(s) 223, 1107, 1135
BcgI CGANNNNNNTGC 2 cut(s) 999, 1033
BciT130I CCWGG 3 cut(s) 78, 104, 367
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 648, 844
BglI GCCNNNNNGGC 1 cut(s) 815
BglII AGATCT 2 cut(s) 191, 672
Bme1390I CCNGG 3 cut(s) 78, 104, 367
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 841
BmgT120I GGNCC 5 cut(s) 236, 363, 517, 1106, 1107
BmiI GGNNCC 4 cut(s) 430, 518, 1108, 1109
BmrFI CCNGG 3 cut(s) 78, 104, 367
BmrI ACTGGG 2 cut(s) 918, 1093
BmuI ACTGGG 2 cut(s) 918, 1093
BpiI GAAGAC 3 cut(s) 635, 720, 1050
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 1 cut(s) 86
BsaBI GATNNNNATC 2 cut(s) 21, 850
BsaHI GRCGYC 1 cut(s) 1049
BsaJI CCNNGG 6 cut(s) 76, 509, 554, 813, 976, 1117
BsaWI WCCGGW 1 cut(s) 1128
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 7 cut(s) 510, 514, 515, 529, 831, 1104, 1135
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 4 cut(s) 430, 759, 913, 1088
Bse3DI GCAATG 1 cut(s) 220
Bse8I GATNNNNATC 2 cut(s) 21, 850
BseBI CCWGG 3 cut(s) 78, 104, 367
BseDI CCNNGG 6 cut(s) 76, 509, 554, 813, 976, 1117
BseGI GGATG 5 cut(s) 58, 147, 346, 538, 695
BseJI GATNNNNATC 2 cut(s) 21, 850
BseLI CCNNNNNNNGG 7 cut(s) 510, 514, 515, 529, 831, 1104, 1135
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 728, 943
BseNI ACTGG 4 cut(s) 430, 759, 913, 1088
BseRI GAGGAG 4 cut(s) 157, 373, 583, 811
BseSI GKGCMC 1 cut(s) 1110
BseX3I CGGCCG 1 cut(s) 1120
BseXI GCAGC 9 cut(s) 208, 211, 214, 217, 403, 424, 454, 848, 980
BseYI CCCAGC 1 cut(s) 1134
BsgI GTGCAG 2 cut(s) 70, 907
Bsh1236I CGCG 3 cut(s) 511, 767, 978
Bsh1285I CGRYCG 2 cut(s) 762, 1123
BshFI GGCC 5 cut(s) 365, 519, 818, 1108, 1122
BshNI GGYRCC 1 cut(s) 428
BsiEI CGRYCG 2 cut(s) 762, 1123
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 3 cut(s) 432, 882, 1129
BslFI GGGAC 1 cut(s) 1214
BslI CCNNNNNNNGG 7 cut(s) 510, 514, 515, 529, 831, 1104, 1135
BsmAI GTCTC 2 cut(s) 648, 844
BsmFI GGGAC 1 cut(s) 1214
BsmI GAATGC 4 cut(s) 10, 48, 1166, 1252
BsnI GGCC 5 cut(s) 365, 519, 818, 1108, 1122
BsoBI CYCGRG 1 cut(s) 841
Bsp120I GGGCCC 1 cut(s) 1106
Bsp1286I GDGCHC 1 cut(s) 1110
Bsp143I GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
BspANI GGCC 5 cut(s) 365, 519, 818, 1108, 1122
BspCNI CTCAG 2 cut(s) 729, 942
BspFNI CGCG 3 cut(s) 511, 767, 978
BspHI TCATGA 1 cut(s) 1041
BspLI GGNNCC 4 cut(s) 430, 518, 1108, 1109
BspPI GGATC 3 cut(s) 92, 840, 846
BspT107I GGYRCC 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 4 cut(s) 430, 759, 913, 1088
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 6 cut(s) 76, 509, 554, 813, 976, 1117
BssMI GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
BssNI GRCGYC 1 cut(s) 1049
BssSI CACGAG 2 cut(s) 335, 355
BssT1I CCWWGG 1 cut(s) 554
Bst2BI CACGAG 2 cut(s) 335, 355
Bst2UI CCWGG 3 cut(s) 78, 104, 367
Bst4CI ACNGT 2 cut(s) 413, 445
Bst6I CTCTTC 6 cut(s) 175, 554, 682, 688, 928, 1190
BstACI GRCGYC 1 cut(s) 1049
BstC8I GCNNGC 2 cut(s) 119, 959
BstDEI CTNAG 3 cut(s) 387, 737, 929
BstDSI CCRYGG 3 cut(s) 509, 976, 1117
BstF5I GGATG 5 cut(s) 58, 147, 346, 538, 695
BstFNI CGCG 3 cut(s) 511, 767, 978
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 7 cut(s) 19, 25, 87, 194, 675, 848, 854
BstMAI GTCTC 2 cut(s) 648, 844
BstMBI GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
BstMCI CGRYCG 2 cut(s) 762, 1123
BstNI CCWGG 3 cut(s) 78, 104, 367
BstSCI CCNGG 3 cut(s) 76, 102, 365
BstSLI GKGCMC 1 cut(s) 1110
BstUI CGCG 3 cut(s) 511, 767, 978
BstV1I GCAGC 9 cut(s) 208, 211, 214, 217, 403, 424, 454, 848, 980
BstV2I GAAGAC 3 cut(s) 635, 720, 1050
BstX2I RGATCY 5 cut(s) 84, 191, 672, 845, 851
BstXI CCANNNNNNTGG 1 cut(s) 980
BstYI RGATCY 5 cut(s) 84, 191, 672, 845, 851
BstZI CGGCCG 1 cut(s) 1120
BsuRI GGCC 5 cut(s) 365, 519, 818, 1108, 1122
BtgI CCRYGG 3 cut(s) 509, 976, 1117
BtsCI GGATG 5 cut(s) 58, 147, 346, 538, 695
BtsI GCAGTG 3 cut(s) 53, 58, 994
BtsIMutI CAGTG 4 cut(s) 53, 58, 994, 1039
Cac8I GCNNGC 2 cut(s) 119, 959
CciI TCATGA 1 cut(s) 1041
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 5 cut(s) 236, 363, 517, 1106, 1107
Cfr42I CCGCGG 2 cut(s) 512, 979
CseI GACGC 1 cut(s) 773
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 4 cut(s) 31, 475, 1000, 1042
DdeI CTNAG 3 cut(s) 387, 737, 929
DpnI GATC 7 cut(s) 18, 24, 86, 193, 674, 847, 853
DpnII GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
DrdI GACNNNNNNGTC 1 cut(s) 1054
DseDI GACNNNNNNGTC 1 cut(s) 1054
EaeI YGGCCR 1 cut(s) 1120
EagI CGGCCG 1 cut(s) 1120
Eam1104I CTCTTC 6 cut(s) 175, 554, 682, 688, 928, 1190
EarI CTCTTC 6 cut(s) 175, 554, 682, 688, 928, 1190
EciI GGCGGA 3 cut(s) 238, 688, 1087
EclXI CGGCCG 1 cut(s) 1120
Eco130I CCWWGG 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 1110
Eco47I GGWCC 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 1120
Eco57I CTGAAG 2 cut(s) 634, 1203
Eco88I CYCGRG 1 cut(s) 841
EcoO109I RGGNCCY 2 cut(s) 1106, 1107
EcoRII CCWGG 3 cut(s) 76, 102, 365
EcoT14I CCWWGG 1 cut(s) 554
EcoT38I GRGCYC 1 cut(s) 1110
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 4 cut(s) 34, 478, 1003, 1045
FaiI YATR 7 cut(s) 32, 64, 351, 476, 1001, 1043, 1205
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 1 cut(s) 1214
FatI CATG 4 cut(s) 30, 474, 999, 1041
FauI CCCGC 4 cut(s) 507, 516, 560, 1016
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 2 cut(s) 497, 762
FokI GGATG 5 cut(s) 45, 134, 353, 545, 682
FriOI GRGCYC 1 cut(s) 1110
GlaI GCGC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 1138
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 5 cut(s) 365, 519, 818, 1108, 1122
HapII CCGG 3 cut(s) 432, 882, 1129
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 1049
Hin1II CATG 4 cut(s) 34, 478, 1003, 1045
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 4 cut(s) 119, 718, 874, 1215
HinfI GANTC 6 cut(s) 710, 900, 936, 941, 1153, 1252
HpaII CCGG 3 cut(s) 432, 882, 1129
HphI GGTGA 1 cut(s) 1162
Hpy166II GTNNAC 4 cut(s) 280, 498, 763, 1117
Hpy188I TCNGA 8 cut(s) 196, 457, 541, 653, 738, 932, 1158, 1222
Hpy188III TCNNGA 7 cut(s) 20, 26, 530, 841, 843, 849, 1042
Hpy8I GTNNAC 4 cut(s) 280, 498, 763, 1117
Hpy99I CGWCG 6 cut(s) 767, 776, 860, 1066, 1069, 1072
HpyAV CCTTC 9 cut(s) 145, 192, 249, 700, 835, 947, 1097, 1188, 1266
HpyCH4III ACNGT 2 cut(s) 413, 445
HpyCH4IV ACGT 1 cut(s) 1049
HpyCH4V TGCA 5 cut(s) 46, 51, 161, 924, 999
HpyF3I CTNAG 3 cut(s) 387, 737, 929
HpySE526I ACGT 1 cut(s) 1049
Hsp92I GRCGYC 1 cut(s) 1049
Hsp92II CATG 4 cut(s) 34, 478, 1003, 1045
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 16
KspI CCGCGG 2 cut(s) 512, 979
Kzo9I GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
LmnI GCTCC 5 cut(s) 160, 218, 489, 1131, 1240
Lsp1109I GCAGC 9 cut(s) 208, 211, 214, 217, 403, 424, 454, 848, 980
MaeII ACGT 1 cut(s) 1049
MaeIII GTNAC 4 cut(s) 53, 407, 609, 1124
MalI GATC 7 cut(s) 18, 24, 86, 193, 674, 847, 853
MbiI CCGCTC 1 cut(s) 832
MboI GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
MflI RGATCY 5 cut(s) 84, 191, 672, 845, 851
MhlI GDGCHC 1 cut(s) 1110
MluCI AATT 1 cut(s) 325
MlyI GAGTC 4 cut(s) 704, 945, 950, 1162
MseI TTAA 2 cut(s) 204, 621
MslI CAYNNNNRTG 2 cut(s) 339, 978
MspA1I CMGCKG 2 cut(s) 511, 978
MspI CCGG 3 cut(s) 432, 882, 1129
MspR9I CCNGG 3 cut(s) 78, 104, 367
Mva1269I GAATGC 4 cut(s) 10, 48, 1166, 1252
MvaI CCWGG 3 cut(s) 78, 104, 367
MvnI CGCG 3 cut(s) 511, 767, 978
NdeII GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
NlaIII CATG 4 cut(s) 34, 478, 1003, 1045
NlaIV GGNNCC 4 cut(s) 430, 518, 1108, 1109
NmeAIII GCCGAG 2 cut(s) 93, 794
NmuCI GTSAC 3 cut(s) 53, 407, 609
OliI CACNNNNGTG 1 cut(s) 978
PaeR7I CTCGAG 1 cut(s) 841
PagI TCATGA 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 5 cut(s) 768, 771, 1061, 1067, 1073
PctI GAATGC 4 cut(s) 10, 48, 1166, 1252
PfeI GAWTC 2 cut(s) 900, 1252
PflMI CCANNNNNTGG 1 cut(s) 529
PfoI TCCNGGA 1 cut(s) 102
PleI GAGTC 4 cut(s) 704, 944, 949, 1161
PpsI GAGTC 4 cut(s) 704, 944, 949, 1161
PsiI TTATAA 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 76, 102, 365
PspFI CCCAGC 1 cut(s) 1134
PspGI CCWGG 3 cut(s) 76, 102, 365
PspN4I GGNNCC 4 cut(s) 430, 518, 1108, 1109
PspOMI GGGCCC 1 cut(s) 1106
PspPI GGNCC 5 cut(s) 236, 363, 517, 1106, 1107
PsuI RGATCY 5 cut(s) 84, 191, 672, 845, 851
RseI CAYNNNNRTG 2 cut(s) 339, 978
SacII CCGCGG 2 cut(s) 512, 979
SalI GTCGAC 1 cut(s) 761
SaqAI TTAA 2 cut(s) 204, 621
Sau3AI GATC 7 cut(s) 16, 22, 84, 191, 672, 845, 851
Sau96I GGNCC 5 cut(s) 236, 363, 517, 1106, 1107
SchI GAGTC 4 cut(s) 704, 945, 950, 1162
ScrFI CCNGG 3 cut(s) 78, 104, 367
SduI GDGCHC 1 cut(s) 1110
Sfr274I CTCGAG 1 cut(s) 841
Sfr303I CCGCGG 2 cut(s) 512, 979
SgrBI CCGCGG 2 cut(s) 512, 979
SinI GGWCC 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 841
SmiMI CAYNNNNRTG 2 cut(s) 339, 978
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
Sse9I AATT 1 cut(s) 325
StyD4I CCNGG 3 cut(s) 76, 102, 365
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 2 cut(s) 413, 445
TaiI ACGT 1 cut(s) 1052
TaqI TCGA 5 cut(s) 762, 828, 842, 894, 939
TasI AATT 1 cut(s) 325
TauI GCSGC 5 cut(s) 213, 254, 514, 812, 1023
TfiI GAWTC 2 cut(s) 900, 1252
Tru1I TTAA 2 cut(s) 204, 621
Tru9I TTAA 2 cut(s) 204, 621
TscAI CASTG 4 cut(s) 53, 58, 1001, 1039
TseFI GTSAC 3 cut(s) 53, 407, 609
TseI GCWGC 9 cut(s) 221, 224, 227, 230, 416, 437, 467, 861, 968
Tsp45I GTSAC 3 cut(s) 53, 407, 609
TspDTI ATGAA 3 cut(s) 17, 1016, 1030
TspGWI ACGGA 2 cut(s) 265, 844
TspRI CASTG 4 cut(s) 53, 58, 1001, 1039
Van91I CCANNNNNTGG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 841
XmiI GTMKAC 2 cut(s) 497, 762
ZraI GACGTC 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.