Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009113

Physical Location & Seq

Genomic Coordinates Reverse (-)

19897370 .. 19899301

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGTGGAAGCAAAAGATCAAGATATGGGTGATGGTATGCAATGTATAAACCATCCATTTACTAAAAACCCAGGTGGGATCTGTGCTTTTTGTCTTCAAGAAAAGCTTGGAAAGCTTGTAACTTCATCTTTCCCACTTCCTAAACACCTCACTTCCTCTTCAACTTCTTCTTCTCCTTCCTTCAGATCTGACTCTGTTGGTAGCACAACCACTGCCTCTGCCGCAAATCTCTCAGCGTCTCTTTCTCTCTCTGTCTCCGGAGCAACAAACAACAACAACAGCAAGCTTCCGTTTTTGTTAGCTAAGAAGAAGAAGAAGATGCTTACTGCTTCTTCTTCTTCTTCGACCACGGCTAATATTGTCTACAAGAGAAGTCAATCTACAAGGACTACGAAGACAACGTACGGAGATTCAGATTTGAGCCCGAGAAAGAGAAATGGGTTTTGGTCCTTTTTTCATCTCTACTCTTCGAAACAACATGGTAGCAGTAAGAAAGTTGGAAACTTTCATCAACCCATAAGCCAGACTGAGACAAAAACAGAGTTGGCAGAGACTACAACAGTGGGATCTTCGTCTTCTTCGTCAGCTTCTTCTTCAATGTCAAAGAGAGTTGTTGGTGGTGGTGGGAGTAGTAGTAACAGAAACGGTATTGATGTGATTGTTGAAGAAGATGGAAGTCCTAACATTGAAGTCACACCAAGTGAGAGGAAAGTGTCGAGATCTAGATCTGTTGGGTGTGGAAGTAGAAGCTTCTCTGGTGATTTCTTTGAGAGGATCACAAATGGGTTTGGAGATTGTACTTTGAGAAGAGTTGAGTCACAGAGAGAAGGTAATAATAACAAAGGTAACAAGGTCAGTAGTAACCCTAGTAATGGTGTTAGAGAGATGGTGAGATGTGGTGGGATCTTTGGTGGGTTTATGATAATGACGTCATCGTCTTCTTCTTCATCTTCATCATCATGGGTATCATCATCATCAGCTGAACATCATCATCATCATAATCATAACATGGGTCATGGTGGTGGAGGAAGGAACAGAAGCTGGGGATGGTCATTTGCAAGTCCAATGAGAGCTTTTACTTCTTCTTCTTACTCTGGTAAAAGAGGCCGTACAATTTCAGATTCTACTACAAGCAAGAACACAACTCCAAACTTGGGTGCAATTCCTTCTTTGTTGTCTGTCAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

42.05

Weight (kDa)

10.07

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06868 AT5G49100
fragaria_vesca	FvH4_4g18460
malus_domestica	MD13G1166900.v1.1 MD16G1166700.v1.1
prunus_persica	Prupe.1G133400_v2.0.a1
pyrus_communis	pycom13g14260 pycom16g14070
rosa_chinensis	RchiOBHm_Chr4g0422951
rosa_laevigata	RLG00000007594
rosa_multiflora	Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365070
rosa_rugosa	Rorug04G0182600
rosa_samantha	Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000
rosa_wichuraiana	Rw4G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	934
AatII	GACGTC	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	363
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	4 cut(s)	86, 574, 782, 911
AcuI	CTGAAG	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	929
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	3 cut(s)	404, 799, 1111
AfiI	CCNNNNNNNGG	2 cut(s)	872, 1154
AgsI	TTSAA	5 cut(s)	98, 162, 597, 665, 689
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	427, 459
Alw26I	GTCTC	4 cut(s)	243, 259, 524, 545
AlwI	GGATC	4 cut(s)	86, 574, 782, 911
AlwNI	CAGNNNCTG	2 cut(s)	1041, 1188
Ama87I	CYCGRG	1 cut(s)	424
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	1 cut(s)	1105
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	41, 770, 901
AsuII	TTCGAA	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	425
BarI	GAAGNNNNNNTAC	4 cut(s)	364, 386, 396, 418
BbsI	GAAGAC	4 cut(s)	86, 401, 567, 930
BccI	CCATC	5 cut(s)	26, 60, 665, 880, 1041
BceAI	ACGGC	2 cut(s)	366, 1092
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	4 cut(s)	243, 259, 524, 545
BfaI	CTAG	2 cut(s)	723, 867
BglII	AGATCT	3 cut(s)	185, 719, 725
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	447
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	309
BpiI	GAAGAC	4 cut(s)	86, 401, 567, 930
Bpu14I	TTCGAA	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	724
BsaHI	GRCGYC	1 cut(s)	929
BsaJI	CCNNGG	2 cut(s)	70, 348
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	872, 1154
Bse3DI	GCAATG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	724
BseAI	TCCGGA	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	70, 348
BseGI	GGATG	2 cut(s)	52, 1052
BseJI	GATNNNNATC	1 cut(s)	724
BseLI	CCNNNNNNNGG	2 cut(s)	872, 1154
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	246, 519
BseYI	CCCAGC	1 cut(s)	1041
BshFI	GGCC	1 cut(s)	1107
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	258
BsiWI	CGTACG	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	872, 1154
BsmAI	GTCTC	4 cut(s)	243, 259, 524, 545
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	1107
BsoBI	CYCGRG	1 cut(s)	424
Bsp119I	TTCGAA	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	1107
BspCNI	CTCAG	2 cut(s)	245, 520
BspEI	TCCGGA	1 cut(s)	257
BspPI	GGATC	4 cut(s)	86, 574, 782, 911
BspT104I	TTCGAA	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	70, 348
BssMI	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
BssNI	GRCGYC	1 cut(s)	929
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	562, 647
Bst6I	CTCTTC	3 cut(s)	163, 472, 802
BstACI	GRCGYC	1 cut(s)	929
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	232, 303, 528
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	52, 1052
BstKTI	GATC	8 cut(s)	19, 81, 188, 569, 722, 728, 777, 906
BstMAI	GTCTC	4 cut(s)	243, 259, 524, 545
BstMBI	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 221
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstV2I	GAAGAC	4 cut(s)	86, 401, 567, 930
BstX2I	RGATCY	6 cut(s)	78, 185, 566, 719, 725, 903
BstYI	RGATCY	6 cut(s)	78, 185, 566, 719, 725, 903
BsuRI	GGCC	1 cut(s)	1107
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	52, 1052
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	210, 567
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	2 cut(s)	1041, 1188
Cfr13I	GGNCC	1 cut(s)	447
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	403, 798, 1110
CviAII	CATG	4 cut(s)	479, 960, 1009, 1016
CviQI	GTAC	3 cut(s)	403, 798, 1110
DdeI	CTNAG	3 cut(s)	232, 303, 528
DpnI	GATC	8 cut(s)	18, 80, 187, 568, 721, 727, 776, 905
DpnII	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
DraIII	CACNNNGTG	1 cut(s)	701
DrdI	GACNNNNNNGTC	1 cut(s)	934
DseDI	GACNNNNNNGTC	1 cut(s)	934
Eam1104I	CTCTTC	3 cut(s)	163, 472, 802
EarI	CTCTTC	3 cut(s)	163, 472, 802
Eco24I	GRGCYC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	4 cut(s)	482, 963, 1012, 1019
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	4 cut(s)	478, 959, 1008, 1015
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	39, 1059
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	723, 867
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	1045
HaeIII	GGCC	1 cut(s)	1107
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	929
Hin1II	CATG	4 cut(s)	482, 963, 1012, 1019
HindIII	AAGCTT	4 cut(s)	104, 113, 284, 748
HinfI	GANTC	4 cut(s)	191, 410, 815, 1121
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	3 cut(s)	41, 770, 901
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	5 cut(s)	185, 190, 415, 1120, 1184
Hpy188III	TCNNGA	5 cut(s)	20, 98, 258, 717, 723
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	5 cut(s)	186, 190, 821, 1023, 1176
HpyCH4III	ACNGT	2 cut(s)	562, 647
HpyCH4IV	ACGT	2 cut(s)	401, 929
HpyCH4V	TGCA	3 cut(s)	40, 1058, 1160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 221
HpyF3I	CTNAG	3 cut(s)	232, 303, 528
HpySE526I	ACGT	2 cut(s)	401, 929
Hsp92I	GRCGYC	1 cut(s)	929
Hsp92II	CATG	4 cut(s)	482, 963, 1012, 1019
Kpn2I	TCCGGA	1 cut(s)	257
Kzo9I	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	7 cut(s)	57, 84, 271, 536, 741, 1027, 1080
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	723, 867
MaeII	ACGT	2 cut(s)	401, 929
MaeIII	GTNAC	6 cut(s)	118, 635, 691, 816, 845, 860
MalI	GATC	8 cut(s)	18, 80, 187, 568, 721, 727, 776, 905
MboI	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
MflI	RGATCY	6 cut(s)	78, 185, 566, 719, 725, 903
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	2 cut(s)	1113, 1161
MlyI	GAGTC	2 cut(s)	185, 824
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	7 cut(s)	158, 166, 226, 699, 765, 1019, 1097
MroI	TCCGGA	1 cut(s)	257
MslI	CAYNNNNRTG	2 cut(s)	958, 1020
MspA1I	CMGCKG	1 cut(s)	980
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	112, 221
NdeII	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
NlaIII	CATG	4 cut(s)	482, 963, 1012, 1019
NmuCI	GTSAC	2 cut(s)	691, 816
NspV	TTCGAA	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	2 cut(s)	398, 578
PfeI	GAWTC	2 cut(s)	410, 1121
Pfl23II	CGTACG	1 cut(s)	402
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	185, 823
PpsI	GAGTC	2 cut(s)	185, 823
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	1041
PspGI	CCWGG	1 cut(s)	70
PspLI	CGTACG	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	447
PstNI	CAGNNNCTG	2 cut(s)	1041, 1188
PsuI	RGATCY	6 cut(s)	78, 185, 566, 719, 725, 903
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	3 cut(s)	404, 799, 1111
RsaNI	GTAC	3 cut(s)	403, 798, 1110
RseI	CAYNNNNRTG	2 cut(s)	958, 1020
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	8 cut(s)	16, 78, 185, 566, 719, 725, 774, 903
Sau96I	GGNCC	1 cut(s)	447
SchI	GAGTC	2 cut(s)	185, 824
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	425
SfaNI	GCATC	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	470
SinI	GGWCC	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	958, 1020
Sse9I	AATT	2 cut(s)	1113, 1161
SsiI	CCGC	1 cut(s)	222
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	723, 867
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	562, 647
TaiI	ACGT	2 cut(s)	404, 932
TaqI	TCGA	3 cut(s)	344, 470, 716
TasI	AATT	2 cut(s)	1113, 1161
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	410, 1121
TscAI	CASTG	2 cut(s)	217, 567
TseFI	GTSAC	2 cut(s)	691, 816
Tsp45I	GTSAC	2 cut(s)	691, 816
TspDTI	ATGAA	5 cut(s)	114, 446, 497, 936, 942
TspGWI	ACGGA	2 cut(s)	279, 420
TspRI	CASTG	2 cut(s)	217, 567
VpaK11BI	GGWCC	1 cut(s)	447
XbaI	TCTAGA	1 cut(s)	722
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	723, 867
ZraI	GACGTC	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.