MD16G1166700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
13884590 .. 13885855
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1166700.v1.1.491

Sequence Viewer

Length: 1266 bp
ATGAATGCTGTAGCTGATCAAGATCAAGACATGGGAGATGGAATGCAGTGCAGTGACCATCCGTACAGAAGCAACCCAGGTGGGATCTGCGCTTTCTGCCTCCAGGAGAAGCTCGGCAAGCTTGTTTCTTCCGCCTCCCCTCTTCCCATCCACGCTTCTGCAACCTCTTCTTCTTCCTCCCCTCCTTTTAGATCTGACATCATCAATGGCGGCAATGGAGCTGCTGCTGGTCCGTCCAACCTCTCCGTCCACCCAACTTCTTCGTCATCAGCAAAACCCAGAAGCATTGGTAGTAATTCCCGCCACGACGATGAGTTTTACAACACGAGGAGGGCCAGGATTTCTTTTCTTTTGGCTAAGAAAAAGAAGAAAGTGAGTAATGGTGCTGCTACTACTGGTAACGGTGGTGCTACTGTTGCATCTTCCGATCGGGAAGCTGCTAACATGGTGTTTAACCGAAGCAAGTCTACCACCACCCCGCGGCGGGGCCACCATTTCCTGGATGGTTCAGAGGATTTTAGTCCAAGGAAGAGAGGCGGGTTCTGGTCGTTTCTGTATCACTCATCCACCAAGAACTCGTCGCACGCTCTGAACAAGAAGGCAATGGAGAAGTCCAGCTTCAGAGACAACTCCAACTCCAAGATCTCTTCCTCCTCTTCCTTCACGTCGGCGCAAAAGGACTCCAAATGCTTGGGCTCTTCTTCTCTGAGGAATAAAAGCGGACACCTGGCGGTCGACGCGGACGACGATAGCAACAGCAGCCAAGCCACCGCCGCCTCCGCCTCTTCCTTCGAGCGGAAGGTCTCGAGATCCAGATCCGTCGGGTGCGGAAGCCGAAGCTTCTCCGGCGACTTCTTCGAGCGGATCTCAACTGGGTTCGGCGACTGCACTCTCAGAAGAGTCGAGTCGCAGAGAGAAGGCAAGCCCAAAGCCGTGCACCGCGGCGGCGAACACAACAACCACTGCATGAAAGAGAAAGTAAAATGCGGCGGGATTTTCAGTGGGTTCATGATGACGTCCTCGTCTTCGTCATCGTCGTCGTCGTCTTACTGGGTTTCGTCCTCCGCCGAAGGGCCGCTCGTCCACGTCCGGAGCCGGAGCTGGGGGTGGGCGTTTGCGAGTCCGATGAGAGCATTCAGCAAACCTTCTTCGAAAGATGGGAAGAGGGAGATAATTAGACAAGCTTCAGATAAGAACACAGCTCCAAACTTGAATGCGATTCCTTCCTTGCTATCAGTCAGAAGTCGATTATCATCATCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

44.91

Weight (kDa)

10.02

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1021
AatII GACGTC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 499
AccBSI CCGCTC 3 cut(s) 796, 862, 1078
AccI GTMKAC 2 cut(s) 467, 735
AccII CGCG 3 cut(s) 481, 740, 942
AccIII TCCGGA 1 cut(s) 1089
AclWI GGATC 4 cut(s) 92, 804, 810, 872
AcuI CTGAAG 2 cut(s) 604, 1170
AcyI GRCGYC 1 cut(s) 1016
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 8 cut(s) 480, 483, 484, 485, 499, 795, 1071, 1102
AgsI TTSAA 1 cut(s) 1213
AjiI CACGTC 2 cut(s) 666, 1087
AjnI CCWGG 5 cut(s) 76, 102, 335, 498, 726
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 2 cut(s) 618, 808
Alw44I GTGCAC 1 cut(s) 935
AlwI GGATC 4 cut(s) 92, 804, 810, 872
Ama87I CYCGRG 1 cut(s) 805
Aor13HI TCCGGA 1 cut(s) 1089
AoxI GGCC 3 cut(s) 333, 487, 1073
ApaLI GTGCAC 1 cut(s) 935
ApeKI GCWGC 5 cut(s) 221, 224, 386, 437, 759
AspLEI GCGC 2 cut(s) 92, 673
AspS9I GGNCC 4 cut(s) 230, 333, 487, 1073
AsuII TTCGAA 1 cut(s) 1151
AvaI CYCGRG 1 cut(s) 805
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 939
BanII GRGCYC 1 cut(s) 698
BarI GAAGNNNNNNTAC 2 cut(s) 451, 483
BauI CACGAG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 1017
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 5 cut(s) 208, 211, 373, 424, 771
BccI CCATC 5 cut(s) 32, 66, 155, 497, 1151
BceAI ACGGC 1 cut(s) 917
BciT130I CCWGG 5 cut(s) 78, 104, 337, 500, 728
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 618, 808
BfmI CTRYAG 1 cut(s) 9
BglII AGATCT 2 cut(s) 191, 642
Bme1390I CCNGG 5 cut(s) 78, 104, 337, 500, 728
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 805
BmgBI CACGTC 2 cut(s) 666, 1087
BmgT120I GGNCC 4 cut(s) 230, 333, 487, 1073
BmiI GGNNCC 2 cut(s) 488, 1094
BmrFI CCNGG 5 cut(s) 78, 104, 337, 500, 728
BmrI ACTGGG 2 cut(s) 882, 1060
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 2 cut(s) 882, 1060
BpiI GAAGAC 1 cut(s) 1017
BplI GAGNNNNNCTC 2 cut(s) 851, 883
BpmI CTGGAG 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 1151
BsaBI GATNNNNATC 3 cut(s) 21, 814, 1252
BsaHI GRCGYC 1 cut(s) 1016
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 4 cut(s) 76, 479, 524, 940
BsaWI WCCGGW 1 cut(s) 1089
BsaXI ACNNNNNCTCC 2 cut(s) 620, 650
Bsc4I CCNNNNNNNGG 8 cut(s) 480, 483, 484, 485, 499, 795, 1071, 1102
Bse1I ACTGG 3 cut(s) 400, 877, 1055
Bse3DI GCAATG 2 cut(s) 220, 609
Bse8I GATNNNNATC 3 cut(s) 21, 814, 1252
BseAI TCCGGA 1 cut(s) 1089
BseBI CCWGG 5 cut(s) 78, 104, 337, 500, 728
BseDI CCNNGG 4 cut(s) 76, 479, 524, 940
BseGI GGATG 4 cut(s) 58, 147, 508, 563
BseJI GATNNNNATC 3 cut(s) 21, 814, 1252
BseLI CCNNNNNNNGG 8 cut(s) 480, 483, 484, 485, 499, 795, 1071, 1102
BseMI GCAATG 2 cut(s) 220, 609
BseMII CTCAG 2 cut(s) 698, 907
BseNI ACTGG 3 cut(s) 400, 877, 1055
BseRI GAGGAG 2 cut(s) 343, 643
BseSI GKGCMC 1 cut(s) 939
BseXI GCAGC 5 cut(s) 208, 211, 373, 424, 771
BseYI CCCAGC 1 cut(s) 1101
BsgI GTGCAG 2 cut(s) 70, 871
Bsh1236I CGCG 3 cut(s) 481, 740, 942
Bsh1285I CGRYCG 2 cut(s) 430, 735
BshFI GGCC 3 cut(s) 335, 489, 1075
BsiEI CGRYCG 2 cut(s) 430, 735
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 3 cut(s) 846, 1090, 1096
BslI CCNNNNNNNGG 8 cut(s) 480, 483, 484, 485, 499, 795, 1071, 1102
BsmAI GTCTC 2 cut(s) 618, 808
BsmI GAATGC 4 cut(s) 10, 48, 1133, 1219
BsnI GGCC 3 cut(s) 335, 489, 1075
Bso31I GGTCTC 1 cut(s) 808
BsoBI CYCGRG 1 cut(s) 805
Bsp119I TTCGAA 1 cut(s) 1151
Bsp1286I GDGCHC 2 cut(s) 698, 939
Bsp13I TCCGGA 1 cut(s) 1089
Bsp143I GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
BspANI GGCC 3 cut(s) 335, 489, 1075
BspCNI CTCAG 2 cut(s) 699, 906
BspEI TCCGGA 1 cut(s) 1089
BspFNI CGCG 3 cut(s) 481, 740, 942
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 2 cut(s) 488, 1094
BspPI GGATC 4 cut(s) 92, 804, 810, 872
BspQI GCTCTTC 1 cut(s) 703
BspT104I TTCGAA 1 cut(s) 1151
BspTNI GGTCTC 1 cut(s) 808
BsrBI CCGCTC 3 cut(s) 796, 862, 1078
BsrDI GCAATG 2 cut(s) 220, 609
BsrI ACTGG 3 cut(s) 400, 877, 1055
BssECI CCNNGG 4 cut(s) 76, 479, 524, 940
BssMI GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
BssNI GRCGYC 1 cut(s) 1016
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 524
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 5 cut(s) 78, 104, 337, 500, 728
Bst4CI ACNGT 2 cut(s) 404, 415
Bst6I CTCTTC 9 cut(s) 147, 172, 524, 652, 661, 703, 790, 892, 1157
BstACI GRCGYC 1 cut(s) 1016
BstBI TTCGAA 1 cut(s) 1151
BstC8I GCNNGC 3 cut(s) 119, 585, 923
BstDEI CTNAG 3 cut(s) 357, 707, 893
BstDSI CCRYGG 2 cut(s) 479, 940
BstF5I GGATG 4 cut(s) 58, 147, 508, 563
BstFNI CGCG 3 cut(s) 481, 740, 942
BstHHI GCGC 2 cut(s) 92, 673
BstKTI GATC 9 cut(s) 19, 25, 87, 194, 430, 645, 812, 818, 867
BstMAI GTCTC 2 cut(s) 618, 808
BstMBI GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
BstMCI CGRYCG 2 cut(s) 430, 735
BstMWI GCNNNNNNNGC 8 cut(s) 96, 118, 416, 737, 759, 773, 779, 846
BstNI CCWGG 5 cut(s) 78, 104, 337, 500, 728
BstSCI CCNGG 5 cut(s) 76, 102, 335, 498, 726
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 939
BstUI CGCG 3 cut(s) 481, 740, 942
BstV1I GCAGC 5 cut(s) 208, 211, 373, 424, 771
BstV2I GAAGAC 1 cut(s) 1017
BstX2I RGATCY 6 cut(s) 84, 191, 642, 809, 815, 864
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 6 cut(s) 84, 191, 642, 809, 815, 864
BsuRI GGCC 3 cut(s) 335, 489, 1075
BtgI CCRYGG 2 cut(s) 479, 940
BtrI CACGTC 2 cut(s) 666, 1087
BtsCI GGATG 4 cut(s) 58, 147, 508, 563
BtsI GCAGTG 3 cut(s) 53, 58, 961
BtsIMutI CAGTG 4 cut(s) 53, 58, 961, 1006
Cac8I GCNNGC 3 cut(s) 119, 585, 923
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 2 cut(s) 92, 673
Cfr13I GGNCC 4 cut(s) 230, 333, 487, 1073
Cfr42I CCGCGG 2 cut(s) 482, 943
CseI GACGC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 64
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 4 cut(s) 31, 445, 967, 1009
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 3 cut(s) 357, 707, 893
DpnI GATC 9 cut(s) 18, 24, 86, 193, 429, 644, 811, 817, 866
DpnII GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
DrdI GACNNNNNNGTC 1 cut(s) 1021
DseDI GACNNNNNNGTC 1 cut(s) 1021
Eam1104I CTCTTC 9 cut(s) 147, 172, 524, 652, 661, 703, 790, 892, 1157
EarI CTCTTC 9 cut(s) 147, 172, 524, 652, 661, 703, 790, 892, 1157
EciI GGCGGA 3 cut(s) 121, 769, 1054
Eco130I CCWWGG 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 604, 1170
Eco88I CYCGRG 1 cut(s) 805
EcoRII CCWGG 5 cut(s) 76, 102, 335, 498, 726
EcoT14I CCWWGG 1 cut(s) 524
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 4 cut(s) 34, 448, 970, 1012
FaiI YATR 5 cut(s) 32, 446, 968, 1010, 1264
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FatI CATG 4 cut(s) 30, 444, 966, 1008
FauI CCCGC 5 cut(s) 308, 477, 486, 530, 983
FbaI TGATCA 1 cut(s) 16
FblI GTMKAC 2 cut(s) 467, 735
FokI GGATG 4 cut(s) 45, 134, 515, 550
FriOI GRGCYC 1 cut(s) 698
GlaI GCGC 2 cut(s) 91, 672
GsaI CCCAGC 1 cut(s) 1105
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 3 cut(s) 335, 489, 1075
HapII CCGG 3 cut(s) 846, 1090, 1096
HgaI GACGC 1 cut(s) 746
HhaI GCGC 2 cut(s) 92, 673
Hin1I GRCGYC 1 cut(s) 1016
Hin1II CATG 4 cut(s) 34, 448, 970, 1012
Hin6I GCGC 2 cut(s) 90, 671
HinP1I GCGC 2 cut(s) 90, 671
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 3 cut(s) 119, 838, 1182
HinfI GANTC 5 cut(s) 680, 900, 905, 1120, 1219
HpaII CCGG 3 cut(s) 846, 1090, 1096
Hpy166II GTNNAC 5 cut(s) 250, 468, 736, 937, 1084
Hpy188III TCNNGA 8 cut(s) 20, 26, 431, 805, 807, 813, 1009, 1090
Hpy8I GTNNAC 5 cut(s) 250, 468, 736, 937, 1084
Hpy99I CGWCG 9 cut(s) 311, 583, 670, 740, 749, 824, 1039, 1042, 1045
HpyAV CCTTC 8 cut(s) 592, 670, 793, 799, 911, 1064, 1155, 1233
HpyCH4III ACNGT 2 cut(s) 404, 415
HpyCH4IV ACGT 3 cut(s) 665, 1016, 1086
HpyCH4V TGCA 7 cut(s) 46, 51, 161, 419, 888, 937, 966
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 118, 416, 737, 759, 773, 779, 846
HpyF3I CTNAG 3 cut(s) 357, 707, 893
HpySE526I ACGT 3 cut(s) 665, 1016, 1086
Hsp92I GRCGYC 1 cut(s) 1016
Hsp92II CATG 4 cut(s) 34, 448, 970, 1012
HspAI GCGC 2 cut(s) 90, 671
Kpn2I TCCGGA 1 cut(s) 1089
Ksp22I TGATCA 1 cut(s) 16
KspI CCGCGG 2 cut(s) 482, 943
Kzo9I GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
LguI GCTCTTC 1 cut(s) 703
LmnI GCTCC 4 cut(s) 218, 1092, 1098, 1207
Lsp1109I GCAGC 5 cut(s) 208, 211, 373, 424, 771
LweI GCATC 1 cut(s) 428
MaeII ACGT 3 cut(s) 665, 1016, 1086
MaeIII GTNAC 2 cut(s) 53, 398
MalI GATC 9 cut(s) 18, 24, 86, 193, 429, 644, 811, 817, 866
MbiI CCGCTC 3 cut(s) 796, 862, 1078
MboI GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
MflI RGATCY 6 cut(s) 84, 191, 642, 809, 815, 864
MhlI GDGCHC 2 cut(s) 698, 939
MluCI AATT 2 cut(s) 295, 1173
MlyI GAGTC 4 cut(s) 674, 909, 914, 1129
MmeI TCCRAC 2 cut(s) 261, 657
MroI TCCGGA 1 cut(s) 1089
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 1 cut(s) 309
MspA1I CMGCKG 2 cut(s) 481, 942
MspI CCGG 3 cut(s) 846, 1090, 1096
MspR9I CCNGG 5 cut(s) 78, 104, 337, 500, 728
Mva1269I GAATGC 4 cut(s) 10, 48, 1133, 1219
MvaI CCWGG 5 cut(s) 78, 104, 337, 500, 728
MvnI CGCG 3 cut(s) 481, 740, 942
MwoI GCNNNNNNNGC 8 cut(s) 96, 118, 416, 737, 759, 773, 779, 846
NdeII GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
NlaIII CATG 4 cut(s) 34, 448, 970, 1012
NlaIV GGNNCC 2 cut(s) 488, 1094
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 53
NspV TTCGAA 1 cut(s) 1151
PaeR7I CTCGAG 1 cut(s) 805
PagI TCATGA 1 cut(s) 1008
PciSI GCTCTTC 1 cut(s) 703
PcsI WCGNNNNNNNCGW 4 cut(s) 741, 744, 1034, 1040
PctI GAATGC 4 cut(s) 10, 48, 1133, 1219
PfeI GAWTC 1 cut(s) 1219
PflMI CCANNNNNTGG 1 cut(s) 499
PfoI TCCNGGA 2 cut(s) 102, 498
Ple19I CGATCG 1 cut(s) 430
PleI GAGTC 4 cut(s) 674, 908, 913, 1128
PpsI GAGTC 4 cut(s) 674, 908, 913, 1128
Psp6I CCWGG 5 cut(s) 76, 102, 335, 498, 726
PspFI CCCAGC 1 cut(s) 1101
PspGI CCWGG 5 cut(s) 76, 102, 335, 498, 726
PspN4I GGNNCC 2 cut(s) 488, 1094
PspPI GGNCC 4 cut(s) 230, 333, 487, 1073
PsuI RGATCY 6 cut(s) 84, 191, 642, 809, 815, 864
PvuI CGATCG 1 cut(s) 430
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 309
SacII CCGCGG 2 cut(s) 482, 943
SalI GTCGAC 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 703
SaqAI TTAA 1 cut(s) 453
Sau3AI GATC 9 cut(s) 16, 22, 84, 191, 427, 642, 809, 815, 864
Sau96I GGNCC 4 cut(s) 230, 333, 487, 1073
SchI GAGTC 4 cut(s) 674, 909, 914, 1129
ScrFI CCNGG 5 cut(s) 78, 104, 337, 500, 728
SduI GDGCHC 2 cut(s) 698, 939
SfaNI GCATC 1 cut(s) 428
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 805
Sfr303I CCGCGG 2 cut(s) 482, 943
SfuI TTCGAA 1 cut(s) 1151
SgrBI CCGCGG 2 cut(s) 482, 943
SinI GGWCC 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 805
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 805
SmoI CTYRAG 1 cut(s) 805
Sse9I AATT 2 cut(s) 295, 1173
StyD4I CCNGG 5 cut(s) 76, 102, 335, 498, 726
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 2 cut(s) 404, 415
TaiI ACGT 3 cut(s) 668, 1019, 1089
TaqI TCGA 7 cut(s) 735, 792, 806, 858, 903, 1151, 1246
TasI AATT 2 cut(s) 295, 1173
TauI GCSGC 7 cut(s) 213, 484, 776, 945, 948, 990, 1078
TfiI GAWTC 1 cut(s) 1219
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 4 cut(s) 53, 58, 968, 1006
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 5 cut(s) 221, 224, 386, 437, 759
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 17, 983, 997
TspGWI ACGGA 4 cut(s) 51, 222, 235, 808
TspRI CASTG 4 cut(s) 53, 58, 968, 1006
Van91I CCANNNNNTGG 1 cut(s) 499
VneI GTGCAC 1 cut(s) 935
VpaK11BI GGWCC 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 805
XmiI GTMKAC 2 cut(s) 467, 735
ZraI GACGTC 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.