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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06868 AT5G49100 |
| fragaria_vesca | FvH4_4g18460 |
| malus_domestica | MD13G1166900.v1.1 MD16G1166700.v1.1 |
| prunus_persica | Prupe.1G133400_v2.0.a1 |
| pyrus_communis | pycom13g14260 pycom16g14070 |
| rosa_chinensis | RchiOBHm_Chr4g0422951 |
| rosa_laevigata | RLG00000007594 |
| rosa_multiflora | Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018 |
| rosa_roxburghii | Rroxscaffold_5G00365070 |
| rosa_rugosa | Rorug04G0182600 |
| rosa_samantha | Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000 |
| rosa_wichuraiana | Rw4G020910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1021 |
| AatII | GACGTC | 1 cut(s) | 1019 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 499 |
| AccBSI | CCGCTC | 3 cut(s) | 796, 862, 1078 |
| AccI | GTMKAC | 2 cut(s) | 467, 735 |
| AccII | CGCG | 3 cut(s) | 481, 740, 942 |
| AccIII | TCCGGA | 1 cut(s) | 1089 |
| AclWI | GGATC | 4 cut(s) | 92, 804, 810, 872 |
| AcuI | CTGAAG | 2 cut(s) | 604, 1170 |
| AcyI | GRCGYC | 1 cut(s) | 1016 |
| AfaI | GTAC | 1 cut(s) | 65 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 480, 483, 484, 485, 499, 795, 1071, 1102 |
| AgsI | TTSAA | 1 cut(s) | 1213 |
| AjiI | CACGTC | 2 cut(s) | 666, 1087 |
| AjnI | CCWGG | 5 cut(s) | 76, 102, 335, 498, 726 |
| Alw21I | GWGCWC | 1 cut(s) | 939 |
| Alw26I | GTCTC | 2 cut(s) | 618, 808 |
| Alw44I | GTGCAC | 1 cut(s) | 935 |
| AlwI | GGATC | 4 cut(s) | 92, 804, 810, 872 |
| Ama87I | CYCGRG | 1 cut(s) | 805 |
| Aor13HI | TCCGGA | 1 cut(s) | 1089 |
| AoxI | GGCC | 3 cut(s) | 333, 487, 1073 |
| ApaLI | GTGCAC | 1 cut(s) | 935 |
| ApeKI | GCWGC | 5 cut(s) | 221, 224, 386, 437, 759 |
| AspLEI | GCGC | 2 cut(s) | 92, 673 |
| AspS9I | GGNCC | 4 cut(s) | 230, 333, 487, 1073 |
| AsuII | TTCGAA | 1 cut(s) | 1151 |
| AvaI | CYCGRG | 1 cut(s) | 805 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BaeGI | GKGCMC | 1 cut(s) | 939 |
| BanII | GRGCYC | 1 cut(s) | 698 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 451, 483 |
| BauI | CACGAG | 1 cut(s) | 325 |
| BbsI | GAAGAC | 1 cut(s) | 1017 |
| Bbv12I | GWGCWC | 1 cut(s) | 939 |
| BbvI | GCAGC | 5 cut(s) | 208, 211, 373, 424, 771 |
| BccI | CCATC | 5 cut(s) | 32, 66, 155, 497, 1151 |
| BceAI | ACGGC | 1 cut(s) | 917 |
| BciT130I | CCWGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| BclI | TGATCA | 1 cut(s) | 16 |
| BcoDI | GTCTC | 2 cut(s) | 618, 808 |
| BfmI | CTRYAG | 1 cut(s) | 9 |
| BglII | AGATCT | 2 cut(s) | 191, 642 |
| Bme1390I | CCNGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmeT110I | CYCGRG | 1 cut(s) | 805 |
| BmgBI | CACGTC | 2 cut(s) | 666, 1087 |
| BmgT120I | GGNCC | 4 cut(s) | 230, 333, 487, 1073 |
| BmiI | GGNNCC | 2 cut(s) | 488, 1094 |
| BmrFI | CCNGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| BmrI | ACTGGG | 2 cut(s) | 882, 1060 |
| BmsI | GCATC | 1 cut(s) | 428 |
| BmuI | ACTGGG | 2 cut(s) | 882, 1060 |
| BpiI | GAAGAC | 1 cut(s) | 1017 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 851, 883 |
| BpmI | CTGGAG | 1 cut(s) | 86 |
| Bpu14I | TTCGAA | 1 cut(s) | 1151 |
| BsaBI | GATNNNNATC | 3 cut(s) | 21, 814, 1252 |
| BsaHI | GRCGYC | 1 cut(s) | 1016 |
| BsaI | GGTCTC | 1 cut(s) | 808 |
| BsaJI | CCNNGG | 4 cut(s) | 76, 479, 524, 940 |
| BsaWI | WCCGGW | 1 cut(s) | 1089 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 620, 650 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 480, 483, 484, 485, 499, 795, 1071, 1102 |
| Bse1I | ACTGG | 3 cut(s) | 400, 877, 1055 |
| Bse3DI | GCAATG | 2 cut(s) | 220, 609 |
| Bse8I | GATNNNNATC | 3 cut(s) | 21, 814, 1252 |
| BseAI | TCCGGA | 1 cut(s) | 1089 |
| BseBI | CCWGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| BseDI | CCNNGG | 4 cut(s) | 76, 479, 524, 940 |
| BseGI | GGATG | 4 cut(s) | 58, 147, 508, 563 |
| BseJI | GATNNNNATC | 3 cut(s) | 21, 814, 1252 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 480, 483, 484, 485, 499, 795, 1071, 1102 |
| BseMI | GCAATG | 2 cut(s) | 220, 609 |
| BseMII | CTCAG | 2 cut(s) | 698, 907 |
| BseNI | ACTGG | 3 cut(s) | 400, 877, 1055 |
| BseRI | GAGGAG | 2 cut(s) | 343, 643 |
| BseSI | GKGCMC | 1 cut(s) | 939 |
| BseXI | GCAGC | 5 cut(s) | 208, 211, 373, 424, 771 |
| BseYI | CCCAGC | 1 cut(s) | 1101 |
| BsgI | GTGCAG | 2 cut(s) | 70, 871 |
| Bsh1236I | CGCG | 3 cut(s) | 481, 740, 942 |
| Bsh1285I | CGRYCG | 2 cut(s) | 430, 735 |
| BshFI | GGCC | 3 cut(s) | 335, 489, 1075 |
| BsiEI | CGRYCG | 2 cut(s) | 430, 735 |
| BsiHKAI | GWGCWC | 1 cut(s) | 939 |
| BsiHKCI | CYCGRG | 1 cut(s) | 805 |
| BsiSI | CCGG | 3 cut(s) | 846, 1090, 1096 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 480, 483, 484, 485, 499, 795, 1071, 1102 |
| BsmAI | GTCTC | 2 cut(s) | 618, 808 |
| BsmI | GAATGC | 4 cut(s) | 10, 48, 1133, 1219 |
| BsnI | GGCC | 3 cut(s) | 335, 489, 1075 |
| Bso31I | GGTCTC | 1 cut(s) | 808 |
| BsoBI | CYCGRG | 1 cut(s) | 805 |
| Bsp119I | TTCGAA | 1 cut(s) | 1151 |
| Bsp1286I | GDGCHC | 2 cut(s) | 698, 939 |
| Bsp13I | TCCGGA | 1 cut(s) | 1089 |
| Bsp143I | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| BspANI | GGCC | 3 cut(s) | 335, 489, 1075 |
| BspCNI | CTCAG | 2 cut(s) | 699, 906 |
| BspEI | TCCGGA | 1 cut(s) | 1089 |
| BspFNI | CGCG | 3 cut(s) | 481, 740, 942 |
| BspHI | TCATGA | 1 cut(s) | 1008 |
| BspLI | GGNNCC | 2 cut(s) | 488, 1094 |
| BspPI | GGATC | 4 cut(s) | 92, 804, 810, 872 |
| BspQI | GCTCTTC | 1 cut(s) | 703 |
| BspT104I | TTCGAA | 1 cut(s) | 1151 |
| BspTNI | GGTCTC | 1 cut(s) | 808 |
| BsrBI | CCGCTC | 3 cut(s) | 796, 862, 1078 |
| BsrDI | GCAATG | 2 cut(s) | 220, 609 |
| BsrI | ACTGG | 3 cut(s) | 400, 877, 1055 |
| BssECI | CCNNGG | 4 cut(s) | 76, 479, 524, 940 |
| BssMI | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| BssNI | GRCGYC | 1 cut(s) | 1016 |
| BssSI | CACGAG | 1 cut(s) | 325 |
| BssT1I | CCWWGG | 1 cut(s) | 524 |
| Bst2BI | CACGAG | 1 cut(s) | 325 |
| Bst2UI | CCWGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| Bst4CI | ACNGT | 2 cut(s) | 404, 415 |
| Bst6I | CTCTTC | 9 cut(s) | 147, 172, 524, 652, 661, 703, 790, 892, 1157 |
| BstACI | GRCGYC | 1 cut(s) | 1016 |
| BstBI | TTCGAA | 1 cut(s) | 1151 |
| BstC8I | GCNNGC | 3 cut(s) | 119, 585, 923 |
| BstDEI | CTNAG | 3 cut(s) | 357, 707, 893 |
| BstDSI | CCRYGG | 2 cut(s) | 479, 940 |
| BstF5I | GGATG | 4 cut(s) | 58, 147, 508, 563 |
| BstFNI | CGCG | 3 cut(s) | 481, 740, 942 |
| BstHHI | GCGC | 2 cut(s) | 92, 673 |
| BstKTI | GATC | 9 cut(s) | 19, 25, 87, 194, 430, 645, 812, 818, 867 |
| BstMAI | GTCTC | 2 cut(s) | 618, 808 |
| BstMBI | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| BstMCI | CGRYCG | 2 cut(s) | 430, 735 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 96, 118, 416, 737, 759, 773, 779, 846 |
| BstNI | CCWGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| BstSCI | CCNGG | 5 cut(s) | 76, 102, 335, 498, 726 |
| BstSFI | CTRYAG | 1 cut(s) | 9 |
| BstSLI | GKGCMC | 1 cut(s) | 939 |
| BstUI | CGCG | 3 cut(s) | 481, 740, 942 |
| BstV1I | GCAGC | 5 cut(s) | 208, 211, 373, 424, 771 |
| BstV2I | GAAGAC | 1 cut(s) | 1017 |
| BstX2I | RGATCY | 6 cut(s) | 84, 191, 642, 809, 815, 864 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 691 |
| BstYI | RGATCY | 6 cut(s) | 84, 191, 642, 809, 815, 864 |
| BsuRI | GGCC | 3 cut(s) | 335, 489, 1075 |
| BtgI | CCRYGG | 2 cut(s) | 479, 940 |
| BtrI | CACGTC | 2 cut(s) | 666, 1087 |
| BtsCI | GGATG | 4 cut(s) | 58, 147, 508, 563 |
| BtsI | GCAGTG | 3 cut(s) | 53, 58, 961 |
| BtsIMutI | CAGTG | 4 cut(s) | 53, 58, 961, 1006 |
| Cac8I | GCNNGC | 3 cut(s) | 119, 585, 923 |
| CciI | TCATGA | 1 cut(s) | 1008 |
| CfoI | GCGC | 2 cut(s) | 92, 673 |
| Cfr13I | GGNCC | 4 cut(s) | 230, 333, 487, 1073 |
| Cfr42I | CCGCGG | 2 cut(s) | 482, 943 |
| CseI | GACGC | 1 cut(s) | 746 |
| Csp6I | GTAC | 1 cut(s) | 64 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 61, 96 |
| CviAII | CATG | 4 cut(s) | 31, 445, 967, 1009 |
| CviQI | GTAC | 1 cut(s) | 64 |
| DdeI | CTNAG | 3 cut(s) | 357, 707, 893 |
| DpnI | GATC | 9 cut(s) | 18, 24, 86, 193, 429, 644, 811, 817, 866 |
| DpnII | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1021 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1021 |
| Eam1104I | CTCTTC | 9 cut(s) | 147, 172, 524, 652, 661, 703, 790, 892, 1157 |
| EarI | CTCTTC | 9 cut(s) | 147, 172, 524, 652, 661, 703, 790, 892, 1157 |
| EciI | GGCGGA | 3 cut(s) | 121, 769, 1054 |
| Eco130I | CCWWGG | 1 cut(s) | 524 |
| Eco24I | GRGCYC | 1 cut(s) | 698 |
| Eco31I | GGTCTC | 1 cut(s) | 808 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco57I | CTGAAG | 2 cut(s) | 604, 1170 |
| Eco88I | CYCGRG | 1 cut(s) | 805 |
| EcoRII | CCWGG | 5 cut(s) | 76, 102, 335, 498, 726 |
| EcoT14I | CCWWGG | 1 cut(s) | 524 |
| EcoT38I | GRGCYC | 1 cut(s) | 698 |
| ErhI | CCWWGG | 1 cut(s) | 524 |
| FaeI | CATG | 4 cut(s) | 34, 448, 970, 1012 |
| FaiI | YATR | 5 cut(s) | 32, 446, 968, 1010, 1264 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 602, 634 |
| FatI | CATG | 4 cut(s) | 30, 444, 966, 1008 |
| FauI | CCCGC | 5 cut(s) | 308, 477, 486, 530, 983 |
| FbaI | TGATCA | 1 cut(s) | 16 |
| FblI | GTMKAC | 2 cut(s) | 467, 735 |
| FokI | GGATG | 4 cut(s) | 45, 134, 515, 550 |
| FriOI | GRGCYC | 1 cut(s) | 698 |
| GlaI | GCGC | 2 cut(s) | 91, 672 |
| GsaI | CCCAGC | 1 cut(s) | 1105 |
| GsuI | CTGGAG | 1 cut(s) | 86 |
| HaeIII | GGCC | 3 cut(s) | 335, 489, 1075 |
| HapII | CCGG | 3 cut(s) | 846, 1090, 1096 |
| HgaI | GACGC | 1 cut(s) | 746 |
| HhaI | GCGC | 2 cut(s) | 92, 673 |
| Hin1I | GRCGYC | 1 cut(s) | 1016 |
| Hin1II | CATG | 4 cut(s) | 34, 448, 970, 1012 |
| Hin6I | GCGC | 2 cut(s) | 90, 671 |
| HinP1I | GCGC | 2 cut(s) | 90, 671 |
| HincII | GTYRAC | 1 cut(s) | 736 |
| HindII | GTYRAC | 1 cut(s) | 736 |
| HindIII | AAGCTT | 3 cut(s) | 119, 838, 1182 |
| HinfI | GANTC | 5 cut(s) | 680, 900, 905, 1120, 1219 |
| HpaII | CCGG | 3 cut(s) | 846, 1090, 1096 |
| Hpy166II | GTNNAC | 5 cut(s) | 250, 468, 736, 937, 1084 |
| Hpy188III | TCNNGA | 8 cut(s) | 20, 26, 431, 805, 807, 813, 1009, 1090 |
| Hpy8I | GTNNAC | 5 cut(s) | 250, 468, 736, 937, 1084 |
| Hpy99I | CGWCG | 9 cut(s) | 311, 583, 670, 740, 749, 824, 1039, 1042, 1045 |
| HpyAV | CCTTC | 8 cut(s) | 592, 670, 793, 799, 911, 1064, 1155, 1233 |
| HpyCH4III | ACNGT | 2 cut(s) | 404, 415 |
| HpyCH4IV | ACGT | 3 cut(s) | 665, 1016, 1086 |
| HpyCH4V | TGCA | 7 cut(s) | 46, 51, 161, 419, 888, 937, 966 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 96, 118, 416, 737, 759, 773, 779, 846 |
| HpyF3I | CTNAG | 3 cut(s) | 357, 707, 893 |
| HpySE526I | ACGT | 3 cut(s) | 665, 1016, 1086 |
| Hsp92I | GRCGYC | 1 cut(s) | 1016 |
| Hsp92II | CATG | 4 cut(s) | 34, 448, 970, 1012 |
| HspAI | GCGC | 2 cut(s) | 90, 671 |
| Kpn2I | TCCGGA | 1 cut(s) | 1089 |
| Ksp22I | TGATCA | 1 cut(s) | 16 |
| KspI | CCGCGG | 2 cut(s) | 482, 943 |
| Kzo9I | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| LguI | GCTCTTC | 1 cut(s) | 703 |
| LmnI | GCTCC | 4 cut(s) | 218, 1092, 1098, 1207 |
| Lsp1109I | GCAGC | 5 cut(s) | 208, 211, 373, 424, 771 |
| LweI | GCATC | 1 cut(s) | 428 |
| MaeII | ACGT | 3 cut(s) | 665, 1016, 1086 |
| MaeIII | GTNAC | 2 cut(s) | 53, 398 |
| MalI | GATC | 9 cut(s) | 18, 24, 86, 193, 429, 644, 811, 817, 866 |
| MbiI | CCGCTC | 3 cut(s) | 796, 862, 1078 |
| MboI | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| MflI | RGATCY | 6 cut(s) | 84, 191, 642, 809, 815, 864 |
| MhlI | GDGCHC | 2 cut(s) | 698, 939 |
| MluCI | AATT | 2 cut(s) | 295, 1173 |
| MlyI | GAGTC | 4 cut(s) | 674, 909, 914, 1129 |
| MmeI | TCCRAC | 2 cut(s) | 261, 657 |
| MroI | TCCGGA | 1 cut(s) | 1089 |
| MseI | TTAA | 1 cut(s) | 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 309 |
| MspA1I | CMGCKG | 2 cut(s) | 481, 942 |
| MspI | CCGG | 3 cut(s) | 846, 1090, 1096 |
| MspR9I | CCNGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| Mva1269I | GAATGC | 4 cut(s) | 10, 48, 1133, 1219 |
| MvaI | CCWGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| MvnI | CGCG | 3 cut(s) | 481, 740, 942 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 96, 118, 416, 737, 759, 773, 779, 846 |
| NdeII | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| NlaIII | CATG | 4 cut(s) | 34, 448, 970, 1012 |
| NlaIV | GGNNCC | 2 cut(s) | 488, 1094 |
| NmeAIII | GCCGAG | 1 cut(s) | 93 |
| NmuCI | GTSAC | 1 cut(s) | 53 |
| NspV | TTCGAA | 1 cut(s) | 1151 |
| PaeR7I | CTCGAG | 1 cut(s) | 805 |
| PagI | TCATGA | 1 cut(s) | 1008 |
| PciSI | GCTCTTC | 1 cut(s) | 703 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 741, 744, 1034, 1040 |
| PctI | GAATGC | 4 cut(s) | 10, 48, 1133, 1219 |
| PfeI | GAWTC | 1 cut(s) | 1219 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 499 |
| PfoI | TCCNGGA | 2 cut(s) | 102, 498 |
| Ple19I | CGATCG | 1 cut(s) | 430 |
| PleI | GAGTC | 4 cut(s) | 674, 908, 913, 1128 |
| PpsI | GAGTC | 4 cut(s) | 674, 908, 913, 1128 |
| Psp6I | CCWGG | 5 cut(s) | 76, 102, 335, 498, 726 |
| PspFI | CCCAGC | 1 cut(s) | 1101 |
| PspGI | CCWGG | 5 cut(s) | 76, 102, 335, 498, 726 |
| PspN4I | GGNNCC | 2 cut(s) | 488, 1094 |
| PspPI | GGNCC | 4 cut(s) | 230, 333, 487, 1073 |
| PsuI | RGATCY | 6 cut(s) | 84, 191, 642, 809, 815, 864 |
| PvuI | CGATCG | 1 cut(s) | 430 |
| RsaI | GTAC | 1 cut(s) | 65 |
| RsaNI | GTAC | 1 cut(s) | 64 |
| RseI | CAYNNNNRTG | 1 cut(s) | 309 |
| SacII | CCGCGG | 2 cut(s) | 482, 943 |
| SalI | GTCGAC | 1 cut(s) | 734 |
| SapI | GCTCTTC | 1 cut(s) | 703 |
| SaqAI | TTAA | 1 cut(s) | 453 |
| Sau3AI | GATC | 9 cut(s) | 16, 22, 84, 191, 427, 642, 809, 815, 864 |
| Sau96I | GGNCC | 4 cut(s) | 230, 333, 487, 1073 |
| SchI | GAGTC | 4 cut(s) | 674, 909, 914, 1129 |
| ScrFI | CCNGG | 5 cut(s) | 78, 104, 337, 500, 728 |
| SduI | GDGCHC | 2 cut(s) | 698, 939 |
| SfaNI | GCATC | 1 cut(s) | 428 |
| SfcI | CTRYAG | 1 cut(s) | 9 |
| Sfr274I | CTCGAG | 1 cut(s) | 805 |
| Sfr303I | CCGCGG | 2 cut(s) | 482, 943 |
| SfuI | TTCGAA | 1 cut(s) | 1151 |
| SgrBI | CCGCGG | 2 cut(s) | 482, 943 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SlaI | CTCGAG | 1 cut(s) | 805 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 309 |
| SmlI | CTYRAG | 1 cut(s) | 805 |
| SmoI | CTYRAG | 1 cut(s) | 805 |
| Sse9I | AATT | 2 cut(s) | 295, 1173 |
| StyD4I | CCNGG | 5 cut(s) | 76, 102, 335, 498, 726 |
| StyI | CCWWGG | 1 cut(s) | 524 |
| TaaI | ACNGT | 2 cut(s) | 404, 415 |
| TaiI | ACGT | 3 cut(s) | 668, 1019, 1089 |
| TaqI | TCGA | 7 cut(s) | 735, 792, 806, 858, 903, 1151, 1246 |
| TasI | AATT | 2 cut(s) | 295, 1173 |
| TauI | GCSGC | 7 cut(s) | 213, 484, 776, 945, 948, 990, 1078 |
| TfiI | GAWTC | 1 cut(s) | 1219 |
| Tru1I | TTAA | 1 cut(s) | 453 |
| Tru9I | TTAA | 1 cut(s) | 453 |
| TscAI | CASTG | 4 cut(s) | 53, 58, 968, 1006 |
| TseFI | GTSAC | 1 cut(s) | 53 |
| TseI | GCWGC | 5 cut(s) | 221, 224, 386, 437, 759 |
| Tsp45I | GTSAC | 1 cut(s) | 53 |
| TspDTI | ATGAA | 3 cut(s) | 17, 983, 997 |
| TspGWI | ACGGA | 4 cut(s) | 51, 222, 235, 808 |
| TspRI | CASTG | 4 cut(s) | 53, 58, 968, 1006 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 499 |
| VneI | GTGCAC | 1 cut(s) | 935 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 500 |
| XhoI | CTCGAG | 1 cut(s) | 805 |
| XmiI | GTMKAC | 2 cut(s) | 467, 735 |
| ZraI | GACGTC | 1 cut(s) | 1017 |