Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009113

Physical Location & Seq

Genomic Coordinates Reverse (-)

18773622 .. 18774926

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGATGGATGGAATCAAAGGCTTAGGAGGAGGAGGGAAGGTTGCCATTGGTGTTGGCAATGGTGTTGGTCACGACCAGATTATTCAGGATCAAGACATGGGAGATGGAATGCAGTGCAGTGCCCATCCTTACAGAAACAACCCAGGTGGGATCTGCGCTTTCTGTCTCCAAGAGAAGCTCGGCAAGCTCGTCTCTTCCTCCTTCCCTCTCCCTGTTCGTAACTCCGCCTCTTCTTCCTCCTCTCCTTCTTTTAGATCTGACATCACCGGCGCCACCAATGCCGGCGGCGTCAGCGTCGCCGCTCCTTCCTCTACCTCCCTCTCGCTCTCGCTCTCGGTCTGTCCCAAAGCCAACGGCGAGTCGTTTCATCACGACGAGTATTACACCCGCCGGGCCAGGATCTCGTTCCTTCTGGCCAGGAAGAAGAAGAAGGTGACTGCTAATGCTTCATCTGATGGTCAGAGCCGCGCCGCCGATATGGTTTTCAAGAGGAGCAAGTCGACCGCAACGCCTCGGAGGGGCCATTTCATGGATTCTGCTGACGACTTTAGCCCCAGAAAGAGAAATGGGTTCTGGTCCTTTCTCTACCACCACCACAAAACTTCCAAGAAAATCGACAGCAAGAGCTTCAGAGACAACTCCAAGATTTCCTCCTCCTCCTCCTTCGCATCTTCAGCGACAGCAACAACAACAGCAGCAGCTGGAAGGGACAAGTGTTTGGGCTCTTCTCTGAGGAATAAAGCCGTAACCGCGGTGGCCGAAGACATGAACGGGAAACCAATGTCCGGTGGTCCCGGGCCTCTAGTCCACGGCAGAAGCAGGAGCAGCTGGGGTTGGGCCTTCGCTAGCCCCATGAGAGCTTTCAGCAAACCTTCTTCGAAAGACGGGAAGAGGGACATTGTTAGACAAGCGAATACTTCAGACAAGAACACCACCCCTAACTTGTCTGCTATTCCTTCCTTGCTATCTGTGAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

34.49

Weight (kDa)

10.19

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06868 AT5G49100
fragaria_vesca	FvH4_4g18460
malus_domestica	MD13G1166900.v1.1 MD16G1166700.v1.1
prunus_persica	Prupe.1G133400_v2.0.a1
pyrus_communis	pycom13g14260 pycom16g14070
rosa_chinensis	RchiOBHm_Chr4g0422951
rosa_laevigata	RLG00000007594
rosa_multiflora	Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365070
rosa_rugosa	Rorug04G0182600
rosa_samantha	Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000
rosa_wichuraiana	Rw4G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccBSI	CCGCTC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	2 cut(s)	468, 752
AciI	CCGC	9 cut(s)	225, 285, 300, 388, 466, 471, 504, 750, 752
AclWI	GGATC	3 cut(s)	96, 158, 407
AcoI	YGGCCR	2 cut(s)	414, 756
AcuI	CTGAAG	3 cut(s)	613, 657, 903
AcyI	GRCGYC	2 cut(s)	270, 288
AfiI	CCNNNNNNNGG	3 cut(s)	518, 529, 785
AgsI	TTSAA	1 cut(s)	487
AjnI	CCWGG	3 cut(s)	142, 395, 416
AluBI	AGCT	6 cut(s)	178, 187, 627, 701, 828, 860
AluI	AGCT	6 cut(s)	178, 187, 627, 701, 828, 860
Alw26I	GTCTC	3 cut(s)	170, 196, 627
AlwI	GGATC	3 cut(s)	96, 158, 407
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	794
AoxI	GGCC	6 cut(s)	393, 414, 520, 756, 797, 837
ApeKI	GCWGC	3 cut(s)	695, 698, 825
AspLEI	GCGC	3 cut(s)	158, 272, 470
AspS9I	GGNCC	6 cut(s)	393, 520, 576, 791, 797, 837
AsuC2I	CCSGG	3 cut(s)	392, 795, 796
AsuHPI	GGTGA	2 cut(s)	256, 445
AsuII	TTCGAA	1 cut(s)	878
AsuNHI	GCTAGC	1 cut(s)	845
AvaI	CYCGRG	1 cut(s)	794
AvaII	GGWCC	2 cut(s)	576, 791
BaeGI	GKGCMC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	768
BbvI	GCAGC	3 cut(s)	707, 710, 837
BccI	CCATC	4 cut(s)	2, 98, 132, 449
BceAI	ACGGC	3 cut(s)	370, 728, 826
BciT130I	CCWGG	3 cut(s)	144, 397, 418
BcnI	CCSGG	3 cut(s)	392, 795, 796
BcoDI	GTCTC	3 cut(s)	170, 196, 627
BfaI	CTAG	2 cut(s)	803, 846
BfoI	RGCGCY	1 cut(s)	273
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	7 cut(s)	286, 300, 466, 471, 696, 699, 826
BlsI	GCNGC	7 cut(s)	287, 301, 467, 472, 697, 700, 827
Bme1390I	CCNGG	6 cut(s)	144, 392, 397, 418, 795, 796
Bme18I	GGWCC	2 cut(s)	576, 791
BmeT110I	CYCGRG	1 cut(s)	794
BmgT120I	GGNCC	6 cut(s)	393, 520, 576, 791, 797, 837
BmiI	GGNNCC	3 cut(s)	271, 521, 793
BmrFI	CCNGG	6 cut(s)	144, 392, 397, 418, 795, 796
BmsI	GCATC	1 cut(s)	677
BmtI	GCTAGC	1 cut(s)	849
BpiI	GAAGAC	1 cut(s)	768
Bpu10I	CCTNAGC	1 cut(s)	22
Bpu14I	TTCGAA	1 cut(s)	878
BpuMI	CCSGG	3 cut(s)	392, 795, 796
BsaHI	GRCGYC	2 cut(s)	270, 288
BsaJI	CCNNGG	5 cut(s)	142, 512, 750, 794, 808
BsaWI	WCCGGW	1 cut(s)	785
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 529, 785
Bse118I	RCCGGY	2 cut(s)	266, 281
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	3 cut(s)	144, 397, 418
BseDI	CCNNGG	5 cut(s)	142, 512, 750, 794, 808
BseGI	GGATG	2 cut(s)	13, 124
BseLI	CCNNNNNNNGG	3 cut(s)	518, 529, 785
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	722
BseRI	GAGGAG	7 cut(s)	42, 45, 229, 505, 643, 646, 649
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	707, 710, 837
BseYI	CCCAGC	1 cut(s)	828
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	468, 752
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	6 cut(s)	395, 416, 522, 758, 799, 839
BshNI	GGYRCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	794
BsiSI	CCGG	5 cut(s)	267, 282, 391, 786, 795
BslFI	GGGAC	4 cut(s)	327, 722, 777, 908
BslI	CCNNNNNNNGG	3 cut(s)	518, 529, 785
BsmAI	GTCTC	3 cut(s)	170, 196, 627
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	4 cut(s)	327, 722, 777, 908
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	6 cut(s)	395, 416, 522, 758, 799, 839
BsoBI	CYCGRG	1 cut(s)	794
Bsp119I	TTCGAA	1 cut(s)	878
Bsp1286I	GDGCHC	2 cut(s)	124, 725
Bsp143I	GATC	4 cut(s)	88, 150, 254, 399
BspACI	CCGC	9 cut(s)	225, 285, 300, 388, 466, 471, 504, 750, 752
BspANI	GGCC	6 cut(s)	395, 416, 522, 758, 799, 839
BspCNI	CTCAG	1 cut(s)	723
BspFNI	CGCG	2 cut(s)	468, 752
BspLI	GGNNCC	3 cut(s)	271, 521, 793
BspOI	GCTAGC	1 cut(s)	849
BspPI	GGATC	3 cut(s)	96, 158, 407
BspQI	GCTCTTC	1 cut(s)	730
BspT104I	TTCGAA	1 cut(s)	878
BspT107I	GGYRCC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	64
BsrFI	RCCGGY	2 cut(s)	266, 281
BssAI	RCCGGY	2 cut(s)	266, 281
BssECI	CCNNGG	5 cut(s)	142, 512, 750, 794, 808
BssMI	GATC	4 cut(s)	88, 150, 254, 399
BssNI	GRCGYC	2 cut(s)	270, 288
Bst2UI	CCWGG	3 cut(s)	144, 397, 418
Bst6I	CTCTTC	4 cut(s)	199, 235, 730, 884
BstACI	GRCGYC	2 cut(s)	270, 288
BstBI	TTCGAA	1 cut(s)	878
BstC8I	GCNNGC	3 cut(s)	185, 283, 847
BstDEI	CTNAG	2 cut(s)	22, 731
BstDSI	CCRYGG	2 cut(s)	750, 808
BstF5I	GGATG	2 cut(s)	13, 124
BstFNI	CGCG	2 cut(s)	468, 752
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	3 cut(s)	158, 272, 470
BstKTI	GATC	4 cut(s)	91, 153, 257, 402
BstMAI	GTCTC	3 cut(s)	170, 196, 627
BstMBI	GATC	4 cut(s)	88, 150, 254, 399
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 278, 291, 674, 749, 825
BstNI	CCWGG	3 cut(s)	144, 397, 418
BstSCI	CCNGG	6 cut(s)	142, 390, 395, 416, 793, 794
BstSLI	GKGCMC	1 cut(s)	124
BstUI	CGCG	2 cut(s)	468, 752
BstV1I	GCAGC	3 cut(s)	707, 710, 837
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	3 cut(s)	150, 254, 399
BstYI	RGATCY	3 cut(s)	150, 254, 399
BsuRI	GGCC	6 cut(s)	395, 416, 522, 758, 799, 839
BtgI	CCRYGG	2 cut(s)	750, 808
BtsCI	GGATG	2 cut(s)	13, 124
BtsI	GCAGTG	2 cut(s)	119, 124
BtsIMutI	CAGTG	2 cut(s)	119, 124
Cac8I	GCNNGC	3 cut(s)	185, 283, 847
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	3 cut(s)	158, 272, 470
Cfr10I	RCCGGY	2 cut(s)	266, 281
Cfr13I	GGNCC	6 cut(s)	393, 520, 576, 791, 797, 837
Cfr42I	CCGCGG	1 cut(s)	753
Cfr9I	CCCGGG	1 cut(s)	794
CseI	GACGC	2 cut(s)	277, 283
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	4 cut(s)	97, 529, 766, 853
DdeI	CTNAG	2 cut(s)	22, 731
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	4 cut(s)	90, 152, 256, 401
DpnII	GATC	4 cut(s)	88, 150, 254, 399
EaeI	YGGCCR	2 cut(s)	414, 756
Eam1104I	CTCTTC	4 cut(s)	199, 235, 730, 884
EarI	CTCTTC	4 cut(s)	199, 235, 730, 884
EciI	GGCGGA	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	576, 791
Eco57I	CTGAAG	3 cut(s)	613, 657, 903
Eco88I	CYCGRG	1 cut(s)	794
EcoRII	CCWGG	3 cut(s)	142, 395, 416
EcoT38I	GRGCYC	1 cut(s)	725
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	4 cut(s)	100, 532, 769, 856
FaiI	YATR	5 cut(s)	98, 479, 530, 767, 854
FaqI	GGGAC	4 cut(s)	327, 722, 777, 908
FatI	CATG	4 cut(s)	96, 528, 765, 852
FauI	CCCGC	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	7 cut(s)	286, 300, 466, 471, 696, 699, 826
FokI	GGATG	2 cut(s)	20, 111
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	7 cut(s)	286, 300, 466, 471, 696, 699, 826
FspBI	CTAG	2 cut(s)	803, 846
GlaI	GCGC	3 cut(s)	157, 271, 469
GluI	GCNGC	7 cut(s)	286, 300, 466, 471, 696, 699, 826
GsaI	CCCAGC	1 cut(s)	832
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	6 cut(s)	395, 416, 522, 758, 799, 839
HapII	CCGG	5 cut(s)	267, 282, 391, 786, 795
HgaI	GACGC	2 cut(s)	277, 283
HhaI	GCGC	3 cut(s)	158, 272, 470
Hin1I	GRCGYC	2 cut(s)	270, 288
Hin1II	CATG	4 cut(s)	100, 532, 769, 856
Hin6I	GCGC	3 cut(s)	156, 270, 468
HinP1I	GCGC	3 cut(s)	156, 270, 468
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	3 cut(s)	12, 359, 533
HpaII	CCGG	5 cut(s)	267, 282, 391, 786, 795
HphI	GGTGA	2 cut(s)	256, 445
Hpy166II	GTNNAC	2 cut(s)	501, 808
Hpy188I	TCNGA	7 cut(s)	259, 454, 462, 516, 632, 732, 922
Hpy188III	TCNNGA	5 cut(s)	71, 86, 92, 371, 487
Hpy8I	GTNNAC	2 cut(s)	501, 808
Hpy99I	CGWCG	2 cut(s)	299, 377
HpyCH4V	TGCA	2 cut(s)	112, 117
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 278, 291, 674, 749, 825
HpyF3I	CTNAG	2 cut(s)	22, 731
Hsp92I	GRCGYC	2 cut(s)	270, 288
Hsp92II	CATG	4 cut(s)	100, 532, 769, 856
HspAI	GCGC	3 cut(s)	156, 270, 468
KasI	GGCGCC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
KspI	CCGCGG	1 cut(s)	753
Kzo9I	GATC	4 cut(s)	88, 150, 254, 399
LguI	GCTCTTC	1 cut(s)	730
LmnI	GCTCC	3 cut(s)	307, 492, 822
Lsp1109I	GCAGC	3 cut(s)	707, 710, 837
LweI	GCATC	1 cut(s)	677
MaeI	CTAG	2 cut(s)	803, 846
MaeIII	GTNAC	4 cut(s)	68, 218, 433, 745
MalI	GATC	4 cut(s)	90, 152, 256, 401
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	4 cut(s)	88, 150, 254, 399
MflI	RGATCY	3 cut(s)	150, 254, 399
MhlI	GDGCHC	2 cut(s)	124, 725
MlsI	TGGCCA	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	416
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	368
Mox20I	TGGCCA	1 cut(s)	416
MroNI	GCCGGC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	3 cut(s)	701, 752, 828
MspI	CCGG	5 cut(s)	267, 282, 391, 786, 795
MspR9I	CCNGG	6 cut(s)	144, 392, 397, 418, 795, 796
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	3 cut(s)	144, 397, 418
MvnI	CGCG	2 cut(s)	468, 752
MwoI	GCNNNNNNNGC	6 cut(s)	184, 278, 291, 674, 749, 825
NaeI	GCCGGC	1 cut(s)	283
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	3 cut(s)	392, 795, 796
NdeII	GATC	4 cut(s)	88, 150, 254, 399
NgoMIV	GCCGGC	1 cut(s)	281
NheI	GCTAGC	1 cut(s)	845
NlaIII	CATG	4 cut(s)	100, 532, 769, 856
NlaIV	GGNNCC	3 cut(s)	271, 521, 793
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	2 cut(s)	68, 433
NspV	TTCGAA	1 cut(s)	878
PciSI	GCTCTTC	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	12, 533
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	7 cut(s)	287, 301, 467, 472, 697, 700, 827
PleI	GAGTC	1 cut(s)	367
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	3 cut(s)	142, 395, 416
PspFI	CCCAGC	1 cut(s)	828
PspGI	CCWGG	3 cut(s)	142, 395, 416
PspN4I	GGNNCC	3 cut(s)	271, 521, 793
PspPI	GGNCC	6 cut(s)	393, 520, 576, 791, 797, 837
PstNI	CAGNNNCTG	1 cut(s)	701
PsuI	RGATCY	3 cut(s)	150, 254, 399
PvuII	CAGCTG	2 cut(s)	701, 828
SacII	CCGCGG	1 cut(s)	753
SalI	GTCGAC	1 cut(s)	499
SapI	GCTCTTC	1 cut(s)	730
SatI	GCNGC	7 cut(s)	286, 300, 466, 471, 696, 699, 826
Sau3AI	GATC	4 cut(s)	88, 150, 254, 399
Sau96I	GGNCC	6 cut(s)	393, 520, 576, 791, 797, 837
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	6 cut(s)	144, 392, 397, 418, 795, 796
SduI	GDGCHC	2 cut(s)	124, 725
SfaNI	GCATC	1 cut(s)	677
SfoI	GGCGCC	1 cut(s)	271
Sfr303I	CCGCGG	1 cut(s)	753
SfuI	TTCGAA	1 cut(s)	878
SgrAI	CRCCGGYG	1 cut(s)	266
SgrBI	CCGCGG	1 cut(s)	753
SinI	GGWCC	2 cut(s)	576, 791
SmaI	CCCGGG	1 cut(s)	796
SsiI	CCGC	9 cut(s)	225, 285, 300, 388, 466, 471, 504, 750, 752
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	803, 846
StyD4I	CCNGG	6 cut(s)	142, 390, 395, 416, 793, 794
TaqI	TCGA	3 cut(s)	500, 615, 878
TaqII	GACCGA	1 cut(s)	325
TauI	GCSGC	4 cut(s)	288, 302, 468, 473
TfiI	GAWTC	2 cut(s)	12, 533
TscAI	CASTG	2 cut(s)	119, 124
TseFI	GTSAC	2 cut(s)	68, 433
TseI	GCWGC	3 cut(s)	695, 698, 825
Tsp45I	GTSAC	2 cut(s)	68, 433
TspDTI	ATGAA	4 cut(s)	356, 438, 517, 782
TspMI	CCCGGG	1 cut(s)	794
TspRI	CASTG	2 cut(s)	119, 124
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	2 cut(s)	576, 791
XmaI	CCCGGG	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	2 cut(s)	803, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.