Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009113

Physical Location & Seq

Genomic Coordinates Forward (+)

10104679 .. 10105935

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g14070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGAATGCTGTAGCTGATCAAGATCAAGACATGGGAGATGGAATGCAGTGCAGTGACCATCCGTACAGAAGCAACCCAGGTGGGATCTGCGCTTTCTGCCTCCAGGAGAAGCTCGGCAAGCTTGTTTCTTCCGCCTCCCTTCTCCCCATCCACGCTTCTGCAACCTCTTCTTCTTCCTCCCCTCCTTTTAGATCTGACATCATCAATGCCGCCAATGGAGCTGCTGCTGGTCCGTCCACCCTCTCCGTCCACCCAACTTCTTCGTCATCGGCAAAACCCAGAAGCATTGGTAGTAATTCCCGCCACGACGATGAGTTTCACAACACGAGGAGGGCCAGGATTTCTTTTCTTTTGGCTAAGAAAAAGAAGAAAGTGAGTAATGGTACTGCTACTACTGGTAACGGTGGTGCTACTGTTGCATCTTCCGATCGGGAAGCTGCTAACATGGTGTTTAACCGAAGCAAGTCTACCACCACCCCGCGGCGGAGCCACCATTTCCTGGATGGTTCAGAGGATTTTAGTCCAAGAAAGAGAGGCGGTTTCTGGTCGTTTCTGTATCACTCATCCACCAAGAAGTCGTCGCACGCTCTGAACAAGAAGGCAATGGAGAAGTCCAGCTTCAGAGACAACTCCAACTCCAAGATCTCTTCCTCCTCTTCCTTCACGTCGGTGCAAAAGGACTCCAAATGCTTGGGTTCTTCTTCTCTGAGGAATAAAAGCGAACACCTGGCGGTCGACGCGGACGATGACAGCAACAGCAGCCAAGCCACCGCCGCCTCCGCCTCTTCCTTCGAGCGGAAGGTCTCGAGATCCAGATCCGTCGGCTGCGGAAGCCGAAGCTTCTCCGGCGACTTCTTCGAGAGGATCTCAACTGGGTTCGGCGACTGCACTCTCAGAAGAGTCGAGTCGCAGAGAGAAGGCAAGCCCAAAGCCGTGCACCGCGGCGGCGAACACAACCACCACAACAACCACTGCATGAAAGAGCGAGTAAAATGCGGCGGGATTTTCAGTGGGTTCATGATGACGTCCTCGTCTTCGTCGTCGTCGTCGTCGTCTTACTGGGTTTCGTCCTCCACCGAAGGGCCGCTCGTCCACGTCCGAAGCCGGAGCTGGGGGTGGGCGTTTGCGAGTCCGATGAGAGCATTCAGCAAACCTTCTTCGAAAGATGGGAAGAGGGAGATAATTAGACAAGCTTCAGATAAGAACACAGCTCCAAGCTTGAATGCGATTCCTTCCTTGCTATCAGTCAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

44.9

Weight (kDa)

10.0

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06868 AT5G49100
fragaria_vesca	FvH4_4g18460
malus_domestica	MD13G1166900.v1.1 MD16G1166700.v1.1
prunus_persica	Prupe.1G133400_v2.0.a1
pyrus_communis	pycom13g14260 pycom16g14070
rosa_chinensis	RchiOBHm_Chr4g0422951
rosa_laevigata	RLG00000007594
rosa_multiflora	Rmu_co8111434.1_g000001 Rmu_co8370611.1_g000001 Rmu_sc0000744.1_g000157 Rmu_sc0000744.1_g000158 Rmu_sc0000830.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365070
rosa_rugosa	Rorug04G0182600
rosa_samantha	Rh4AG242800 Rh4BG247200 Rh4CG256700 Rh4DG242000
rosa_wichuraiana	Rw4G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1030
AatII	GACGTC	1 cut(s)	1028
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	2 cut(s)	796, 1087
AccI	GTMKAC	2 cut(s)	467, 735
AccII	CGCG	3 cut(s)	481, 740, 942
AclWI	GGATC	4 cut(s)	92, 804, 810, 872
AcuI	CTGAAG	2 cut(s)	604, 1179
AcyI	GRCGYC	1 cut(s)	1025
AfaI	GTAC	2 cut(s)	65, 385
AfiI	CCNNNNNNNGG	6 cut(s)	480, 483, 499, 795, 1080, 1111
AgsI	TTSAA	1 cut(s)	1222
AjiI	CACGTC	2 cut(s)	666, 1096
AjnI	CCWGG	5 cut(s)	76, 102, 335, 498, 726
AleI	CACNNNNGTG	1 cut(s)	668
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	2 cut(s)	618, 808
Alw44I	GTGCAC	1 cut(s)	935
AlwI	GGATC	4 cut(s)	92, 804, 810, 872
Ama87I	CYCGRG	1 cut(s)	805
AoxI	GGCC	2 cut(s)	333, 1082
ApaLI	GTGCAC	1 cut(s)	935
ApeKI	GCWGC	5 cut(s)	221, 224, 437, 759, 825
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	230, 333, 1082
AsuII	TTCGAA	1 cut(s)	1160
AvaI	CYCGRG	1 cut(s)	805
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	939
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
BauI	CACGAG	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	1026
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	5 cut(s)	208, 211, 424, 771, 812
BccI	CCATC	5 cut(s)	32, 66, 155, 497, 1160
BceAI	ACGGC	1 cut(s)	917
BcgI	CGANNNNNNTGC	2 cut(s)	975, 1009
BciT130I	CCWGG	5 cut(s)	78, 104, 337, 500, 728
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	618, 808
BfmI	CTRYAG	1 cut(s)	9
BglII	AGATCT	2 cut(s)	191, 642
Bme1390I	CCNGG	5 cut(s)	78, 104, 337, 500, 728
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	805
BmgBI	CACGTC	2 cut(s)	666, 1096
BmgT120I	GGNCC	3 cut(s)	230, 333, 1082
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	5 cut(s)	78, 104, 337, 500, 728
BmrI	ACTGGG	2 cut(s)	882, 1069
BmsI	GCATC	1 cut(s)	428
BmuI	ACTGGG	2 cut(s)	882, 1069
BpiI	GAAGAC	1 cut(s)	1026
BplI	GAGNNNNNCTC	2 cut(s)	851, 883
BpmI	CTGGAG	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	1160
BsaBI	GATNNNNATC	2 cut(s)	21, 814
BsaHI	GRCGYC	1 cut(s)	1025
BsaI	GGTCTC	1 cut(s)	808
BsaJI	CCNNGG	3 cut(s)	76, 479, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	6 cut(s)	480, 483, 499, 795, 1080, 1111
Bse1I	ACTGG	3 cut(s)	400, 877, 1064
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	2 cut(s)	21, 814
BseBI	CCWGG	5 cut(s)	78, 104, 337, 500, 728
BseDI	CCNNGG	3 cut(s)	76, 479, 940
BseGI	GGATG	4 cut(s)	58, 147, 508, 563
BseJI	GATNNNNATC	2 cut(s)	21, 814
BseLI	CCNNNNNNNGG	6 cut(s)	480, 483, 499, 795, 1080, 1111
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	698, 907
BseNI	ACTGG	3 cut(s)	400, 877, 1064
BseRI	GAGGAG	2 cut(s)	343, 643
BseSI	GKGCMC	1 cut(s)	939
BseXI	GCAGC	5 cut(s)	208, 211, 424, 771, 812
BseYI	CCCAGC	1 cut(s)	1110
BsgI	GTGCAG	2 cut(s)	70, 871
Bsh1236I	CGCG	3 cut(s)	481, 740, 942
Bsh1285I	CGRYCG	2 cut(s)	430, 735
BshFI	GGCC	2 cut(s)	335, 1084
BsiEI	CGRYCG	2 cut(s)	430, 735
BsiHKAI	GWGCWC	1 cut(s)	939
BsiHKCI	CYCGRG	1 cut(s)	805
BsiSI	CCGG	2 cut(s)	846, 1105
BslI	CCNNNNNNNGG	6 cut(s)	480, 483, 499, 795, 1080, 1111
BsmAI	GTCTC	2 cut(s)	618, 808
BsmI	GAATGC	4 cut(s)	10, 48, 1142, 1228
BsnI	GGCC	2 cut(s)	335, 1084
Bso31I	GGTCTC	1 cut(s)	808
BsoBI	CYCGRG	1 cut(s)	805
Bsp119I	TTCGAA	1 cut(s)	1160
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp143I	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
BspANI	GGCC	2 cut(s)	335, 1084
BspCNI	CTCAG	2 cut(s)	699, 906
BspFNI	CGCG	3 cut(s)	481, 740, 942
BspHI	TCATGA	1 cut(s)	1017
BspLI	GGNNCC	1 cut(s)	488
BspPI	GGATC	4 cut(s)	92, 804, 810, 872
BspT104I	TTCGAA	1 cut(s)	1160
BspTNI	GGTCTC	1 cut(s)	808
BsrBI	CCGCTC	2 cut(s)	796, 1087
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	400, 877, 1064
BssECI	CCNNGG	3 cut(s)	76, 479, 940
BssMI	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
BssNI	GRCGYC	1 cut(s)	1025
BssSI	CACGAG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	325
Bst2UI	CCWGG	5 cut(s)	78, 104, 337, 500, 728
Bst4CI	ACNGT	2 cut(s)	404, 415
Bst6I	CTCTTC	6 cut(s)	172, 652, 661, 790, 892, 1166
BstACI	GRCGYC	1 cut(s)	1025
BstBI	TTCGAA	1 cut(s)	1160
BstC8I	GCNNGC	3 cut(s)	119, 585, 923
BstDEI	CTNAG	3 cut(s)	357, 707, 893
BstDSI	CCRYGG	2 cut(s)	479, 940
BstF5I	GGATG	4 cut(s)	58, 147, 508, 563
BstFNI	CGCG	3 cut(s)	481, 740, 942
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	9 cut(s)	19, 25, 87, 194, 430, 645, 812, 818, 867
BstMAI	GTCTC	2 cut(s)	618, 808
BstMBI	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
BstMCI	CGRYCG	2 cut(s)	430, 735
BstNI	CCWGG	5 cut(s)	78, 104, 337, 500, 728
BstSCI	CCNGG	5 cut(s)	76, 102, 335, 498, 726
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	939
BstUI	CGCG	3 cut(s)	481, 740, 942
BstV1I	GCAGC	5 cut(s)	208, 211, 424, 771, 812
BstV2I	GAAGAC	1 cut(s)	1026
BstX2I	RGATCY	6 cut(s)	84, 191, 642, 809, 815, 864
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	6 cut(s)	84, 191, 642, 809, 815, 864
BsuRI	GGCC	2 cut(s)	335, 1084
BtgI	CCRYGG	2 cut(s)	479, 940
BtrI	CACGTC	2 cut(s)	666, 1096
BtsCI	GGATG	4 cut(s)	58, 147, 508, 563
BtsI	GCAGTG	3 cut(s)	53, 58, 970
BtsIMutI	CAGTG	4 cut(s)	53, 58, 970, 1015
Cac8I	GCNNGC	3 cut(s)	119, 585, 923
CciI	TCATGA	1 cut(s)	1017
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	230, 333, 1082
Cfr42I	CCGCGG	2 cut(s)	482, 943
CseI	GACGC	1 cut(s)	746
Csp6I	GTAC	2 cut(s)	64, 384
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	4 cut(s)	31, 445, 976, 1018
CviQI	GTAC	2 cut(s)	64, 384
DdeI	CTNAG	3 cut(s)	357, 707, 893
DpnI	GATC	9 cut(s)	18, 24, 86, 193, 429, 644, 811, 817, 866
DpnII	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
DrdI	GACNNNNNNGTC	1 cut(s)	1030
DseDI	GACNNNNNNGTC	1 cut(s)	1030
Eam1104I	CTCTTC	6 cut(s)	172, 652, 661, 790, 892, 1166
EarI	CTCTTC	6 cut(s)	172, 652, 661, 790, 892, 1166
EciI	GGCGGA	3 cut(s)	121, 499, 769
Eco31I	GGTCTC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	604, 1179
Eco88I	CYCGRG	1 cut(s)	805
EcoRII	CCWGG	5 cut(s)	76, 102, 335, 498, 726
FaeI	CATG	4 cut(s)	34, 448, 979, 1021
FaiI	YATR	4 cut(s)	32, 446, 977, 1019
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FatI	CATG	4 cut(s)	30, 444, 975, 1017
FauI	CCCGC	3 cut(s)	308, 486, 992
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	2 cut(s)	467, 735
FokI	GGATG	4 cut(s)	45, 134, 515, 550
GlaI	GCGC	1 cut(s)	91
GsaI	CCCAGC	1 cut(s)	1114
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	335, 1084
HapII	CCGG	2 cut(s)	846, 1105
HgaI	GACGC	1 cut(s)	746
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	1025
Hin1II	CATG	4 cut(s)	34, 448, 979, 1021
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HindIII	AAGCTT	4 cut(s)	119, 838, 1191, 1216
HinfI	GANTC	5 cut(s)	680, 900, 905, 1129, 1228
HpaII	CCGG	2 cut(s)	846, 1105
Hpy166II	GTNNAC	6 cut(s)	237, 250, 468, 736, 937, 1093
Hpy188III	TCNNGA	8 cut(s)	20, 26, 431, 805, 807, 813, 859, 1018
Hpy8I	GTNNAC	6 cut(s)	237, 250, 468, 736, 937, 1093
HpyAV	CCTTC	9 cut(s)	149, 592, 670, 793, 799, 911, 1073, 1164, 1242
HpyCH4III	ACNGT	2 cut(s)	404, 415
HpyCH4IV	ACGT	3 cut(s)	665, 1025, 1095
HpyCH4V	TGCA	8 cut(s)	46, 51, 161, 419, 673, 888, 937, 975
HpyF3I	CTNAG	3 cut(s)	357, 707, 893
HpySE526I	ACGT	3 cut(s)	665, 1025, 1095
Hsp92I	GRCGYC	1 cut(s)	1025
Hsp92II	CATG	4 cut(s)	34, 448, 979, 1021
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	16
KspI	CCGCGG	2 cut(s)	482, 943
Kzo9I	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
LmnI	GCTCC	4 cut(s)	218, 486, 1107, 1216
Lsp1109I	GCAGC	5 cut(s)	208, 211, 424, 771, 812
LweI	GCATC	1 cut(s)	428
MaeII	ACGT	3 cut(s)	665, 1025, 1095
MaeIII	GTNAC	2 cut(s)	53, 398
MalI	GATC	9 cut(s)	18, 24, 86, 193, 429, 644, 811, 817, 866
MbiI	CCGCTC	2 cut(s)	796, 1087
MboI	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
MflI	RGATCY	6 cut(s)	84, 191, 642, 809, 815, 864
MhlI	GDGCHC	1 cut(s)	939
MluCI	AATT	2 cut(s)	295, 1182
MlyI	GAGTC	4 cut(s)	674, 909, 914, 1138
MmeI	TCCRAC	1 cut(s)	657
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	2 cut(s)	309, 668
MspA1I	CMGCKG	2 cut(s)	481, 942
MspI	CCGG	2 cut(s)	846, 1105
MspR9I	CCNGG	5 cut(s)	78, 104, 337, 500, 728
Mva1269I	GAATGC	4 cut(s)	10, 48, 1142, 1228
MvaI	CCWGG	5 cut(s)	78, 104, 337, 500, 728
MvnI	CGCG	3 cut(s)	481, 740, 942
NdeII	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
NlaIII	CATG	4 cut(s)	34, 448, 979, 1021
NlaIV	GGNNCC	1 cut(s)	488
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	1160
OliI	CACNNNNGTG	1 cut(s)	668
PaeR7I	CTCGAG	1 cut(s)	805
PagI	TCATGA	1 cut(s)	1017
PcsI	WCGNNNNNNNCGW	5 cut(s)	741, 1037, 1043, 1046, 1049
PctI	GAATGC	4 cut(s)	10, 48, 1142, 1228
PfeI	GAWTC	1 cut(s)	1228
PflMI	CCANNNNNTGG	1 cut(s)	499
PfoI	TCCNGGA	2 cut(s)	102, 498
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	4 cut(s)	674, 908, 913, 1137
PpsI	GAGTC	4 cut(s)	674, 908, 913, 1137
Psp6I	CCWGG	5 cut(s)	76, 102, 335, 498, 726
PspFI	CCCAGC	1 cut(s)	1110
PspGI	CCWGG	5 cut(s)	76, 102, 335, 498, 726
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	3 cut(s)	230, 333, 1082
PsuI	RGATCY	6 cut(s)	84, 191, 642, 809, 815, 864
PvuI	CGATCG	1 cut(s)	430
RsaI	GTAC	2 cut(s)	65, 385
RsaNI	GTAC	2 cut(s)	64, 384
RseI	CAYNNNNRTG	2 cut(s)	309, 668
SacII	CCGCGG	2 cut(s)	482, 943
SalI	GTCGAC	1 cut(s)	734
SaqAI	TTAA	1 cut(s)	453
Sau3AI	GATC	9 cut(s)	16, 22, 84, 191, 427, 642, 809, 815, 864
Sau96I	GGNCC	3 cut(s)	230, 333, 1082
SchI	GAGTC	4 cut(s)	674, 909, 914, 1138
ScrFI	CCNGG	5 cut(s)	78, 104, 337, 500, 728
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	805
Sfr303I	CCGCGG	2 cut(s)	482, 943
SfuI	TTCGAA	1 cut(s)	1160
SgrBI	CCGCGG	2 cut(s)	482, 943
SinI	GGWCC	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	805
SmiMI	CAYNNNNRTG	2 cut(s)	309, 668
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
Sse9I	AATT	2 cut(s)	295, 1182
StyD4I	CCNGG	5 cut(s)	76, 102, 335, 498, 726
TaaI	ACNGT	2 cut(s)	404, 415
TaiI	ACGT	3 cut(s)	668, 1028, 1098
TaqI	TCGA	6 cut(s)	735, 792, 806, 858, 903, 1160
TasI	AATT	2 cut(s)	295, 1182
TauI	GCSGC	7 cut(s)	212, 484, 776, 945, 948, 999, 1087
TfiI	GAWTC	1 cut(s)	1228
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	4 cut(s)	53, 58, 977, 1015
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	5 cut(s)	221, 224, 437, 759, 825
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	17, 992, 1006
TspGWI	ACGGA	4 cut(s)	51, 222, 235, 808
TspRI	CASTG	4 cut(s)	53, 58, 977, 1015
Van91I	CCANNNNNTGG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	805
XmiI	GTMKAC	2 cut(s)	467, 735
ZraI	GACGTC	1 cut(s)	1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.