AT3G07080

Solute carrier family 35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005884
Physical Location & Seq
Forward (+)
2241002 .. 2243124
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07080.1

Sequence Viewer

Length: 1317 bp
ATGTCAACAAAGTTATGGAGATGGGTGTTAGGGCTGATATACCTATTTGCCGTTGCCACGATTTGGATTGCGGCTAGTTTTGTAGTCCAGTCTGTGGTGGAAGCTGGTGTTTCTCCGTTCTTGATCACTTTCATTTGTAATTCATTGTTCGTTGTTTATCTTCCCCTTTTTGAGATTGGTCGATATCTGGAAGATGCATATGGGAGTTTATTGTTCTGGAGAAGCAAAAGGTCGCATTTAATGGAACTGGTCGAATCAGAGAAGGCTGTTTTGCTTGGAAAAGATGTTTCTGGTGTGAAATCAGATGCTACTGAGAGTTCAGGGCTTGTTGTGAGAGAGCAAGAGATTAGTGAGGGTGGTAATGGGATTGAATCTGGATTGGAAAATATAGAGCTTGAGATTGATGCTAGTGTCAATGTTAGTGATGGAGCTAGTGGAGTTTCTAATAAAGGATTAGATGAGAAGGGTCGTTGGACAAGGATGCGAGTTGCTAAAGTTAGCCTTGTGATTTGTCCGTTTTGGTTTTTGGCGCAGCTTACATTTAATGTCTCTCTCAAGTACACAACAGTTACGTCAAATACCATATTAAGCAGTGCATCAAGCCTTTTCACCTTTCTTGTTTCACTAATATTCTTGGGTGAGAAGTTCACATGGTTGAAACTCTTCAGCGTTCTTCTTTGTATGTCTGGGACTATAATTGTAAGTATGGGTGACTCAGAGTCCAAGTCAAATGCAGTAGCTAAGAACCCTCTTTTGGGAGATATTCTTTCGCTGGTCTCAGCGGCGCTGTATGCTGTCTACATCACTCTTATACGCAAAAAGCTTCCGGATGATGATGAAAGAAACGGCCGGGTCAGTATGGCTCAGTTCCTCGGGTTTCTTGGTCTCTTCAATTTCTTCATTTTCCTTCCTCCTGCTCTAATACTCAACTTCACAAAGCGAGAACGCTTCAACGCACTTACCTTGAAACAATTTGGCCTAGTTGTTGGCAAAGGTTTGTTAGATAATGTGCTTAGTGACTATCTGTGGGCAAAGGCAGTACTATTGACAACAACCACTGTAGCTACAGCTGGGCTAACTATTCAGGTCCCATTGGCAGCCATTGTAGACAGCTTATCAGGGAACAAACCAAGCTTCACCGACTACATTGGTGCTGCAGCTGTTATGGTTGGCTTTGCAGGGATTAATATTCCCTCAGAGATGTTTTGCAAATCCAAAGAGACTGCTATTGAGTTAGAACCTGGGACTTCGTTCACAGATCCTCCTCCGATTGTGCCAGATAGCATAAGAGTAGATTCTTCACTGACTGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

438

Amino Acids

47.68

Weight (kDa)

5.26

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 157 - 273 2.7e-07 Purine nucleobase transmembrane transport
EamA PF00892 170 - 235 9.3e-10 EamA-like transporter family
TPT PF03151 173 - 314 5e-07 Triose-phosphate Transporter family
SLC35F PF06027 185 - 301 7.8e-12 Solute carrier family 35
EamA PF00892 252 - 396 2e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 63, 94
AccI GTMKAC 2 cut(s) 798, 1107
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 2 cut(s) 71, 782
AclWI GGATC 1 cut(s) 1253
AcoI YGGCCR 1 cut(s) 847
AcuI CTGAAG 1 cut(s) 649
AfaI GTAC 2 cut(s) 560, 1041
AfiI CCNNNNNNNGG 4 cut(s) 63, 94, 754, 755
AgsI TTSAA 5 cut(s) 371, 658, 892, 952, 967
AhdI GACNNNNNGTC 1 cut(s) 718
AjnI CCWGG 1 cut(s) 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
Alw26I GTCTC 4 cut(s) 553, 781, 890, 1214
AlwI GGATC 1 cut(s) 1253
Ama87I CYCGRG 1 cut(s) 872
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 2 cut(s) 847, 976
ApeKI GCWGC 4 cut(s) 532, 1097, 1154, 1157
AseI ATTAAT 1 cut(s) 1185
Asp700I GAANNNNTTC 1 cut(s) 662
AspLEI GCGC 2 cut(s) 532, 787
AspS9I GGNCC 1 cut(s) 1087
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 4 cut(s) 601, 650, 722, 1129
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 1 cut(s) 1087
BbvI GCAGC 4 cut(s) 544, 1109, 1141, 1169
BccI CCATC 2 cut(s) 15, 419
BceAI ACGGC 2 cut(s) 35, 862
BciT130I CCWGG 1 cut(s) 1242
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 4 cut(s) 553, 781, 890, 1214
BfaI CTAG 4 cut(s) 75, 408, 432, 980
BfmI CTRYAG 4 cut(s) 1059, 1065, 1155, 1308
BfoI RGCGCY 1 cut(s) 788
BisI GCNGC 6 cut(s) 72, 533, 783, 1098, 1155, 1158
BlsI GCNGC 6 cut(s) 73, 534, 784, 1099, 1156, 1159
BmcAI AGTACT 1 cut(s) 1041
Bme1390I CCNGG 2 cut(s) 851, 1242
Bme18I GGWCC 1 cut(s) 1087
BmeRI GACNNNNNGTC 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 872
BmgT120I GGNCC 1 cut(s) 1087
BmiI GGNNCC 1 cut(s) 1089
BmrFI CCNGG 2 cut(s) 851, 1242
BmsI GCATC 5 cut(s) 184, 295, 394, 471, 605
BpmI CTGGAG 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 416, 539
BpuMI CCSGG 1 cut(s) 851
BsaI GGTCTC 2 cut(s) 781, 890
BsaJI CCNNGG 2 cut(s) 871, 1241
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 1246, 1276
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 94, 754, 755
Bse1I ACTGG 2 cut(s) 88, 252
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 1 cut(s) 1242
BseDI CCNNGG 2 cut(s) 871, 1241
BseGI GGATG 2 cut(s) 486, 835
BseLI CCNNNNNNNGG 4 cut(s) 63, 94, 754, 755
BseMII CTCAG 5 cut(s) 303, 729, 792, 878, 1209
BseNI ACTGG 2 cut(s) 88, 252
BseRI GAGGAG 1 cut(s) 1254
BseX3I CGGCCG 1 cut(s) 847
BseXI GCAGC 4 cut(s) 544, 1109, 1141, 1169
BseYI CCCAGC 1 cut(s) 1070
Bsh1285I CGRYCG 1 cut(s) 850
BshFI GGCC 2 cut(s) 849, 978
BsiEI CGRYCG 1 cut(s) 850
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 2 cut(s) 827, 850
BslFI GGGAC 3 cut(s) 703, 1073, 1258
BslI CCNNNNNNNGG 4 cut(s) 63, 94, 754, 755
BsmAI GTCTC 4 cut(s) 553, 781, 890, 1214
BsmFI GGGAC 3 cut(s) 703, 1073, 1258
BsnI GGCC 2 cut(s) 849, 978
Bso31I GGTCTC 2 cut(s) 781, 890
BsoBI CYCGRG 1 cut(s) 872
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 2 cut(s) 123, 1258
BspACI CCGC 2 cut(s) 71, 782
BspANI GGCC 2 cut(s) 849, 978
BspCNI CTCAG 5 cut(s) 304, 728, 791, 877, 1208
BspEI TCCGGA 1 cut(s) 826
BspLI GGNNCC 1 cut(s) 1089
BspMAI CTGCAG 1 cut(s) 1159
BspPI GGATC 1 cut(s) 1253
BspTNI GGTCTC 2 cut(s) 781, 890
BsrI ACTGG 2 cut(s) 88, 252
BssECI CCNNGG 2 cut(s) 871, 1241
BssMI GATC 2 cut(s) 123, 1258
Bst2UI CCWGG 1 cut(s) 1242
Bst4CI ACNGT 3 cut(s) 568, 1060, 1309
Bst6I CTCTTC 2 cut(s) 668, 893
BstDEI CTNAG 7 cut(s) 312, 715, 741, 778, 864, 1013, 1195
BstF5I GGATG 2 cut(s) 486, 835
BstH2I RGCGCY 1 cut(s) 788
BstHHI GCGC 2 cut(s) 532, 787
BstKTI GATC 2 cut(s) 126, 1261
BstMAI GTCTC 4 cut(s) 553, 781, 890, 1214
BstMBI GATC 2 cut(s) 123, 1258
BstMCI CGRYCG 1 cut(s) 850
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNI CCWGG 1 cut(s) 1242
BstSCI CCNGG 2 cut(s) 849, 1240
BstSFI CTRYAG 4 cut(s) 1059, 1065, 1155, 1308
BstV1I GCAGC 4 cut(s) 544, 1109, 1141, 1169
BstX2I RGATCY 1 cut(s) 1258
BstYI RGATCY 1 cut(s) 1258
BstZI CGGCCG 1 cut(s) 847
BsuRI GGCC 2 cut(s) 849, 978
BtsCI GGATG 2 cut(s) 486, 835
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 3 cut(s) 598, 1056, 1301
CfoI GCGC 2 cut(s) 532, 787
Cfr13I GGNCC 1 cut(s) 1087
Csp6I GTAC 2 cut(s) 559, 1040
CviAII CATG 1 cut(s) 651
CviQI GTAC 2 cut(s) 559, 1040
DdeI CTNAG 7 cut(s) 312, 715, 741, 778, 864, 1013, 1195
DpnI GATC 2 cut(s) 125, 1260
DpnII GATC 2 cut(s) 123, 1258
DriI GACNNNNNGTC 1 cut(s) 718
EaeI YGGCCR 1 cut(s) 847
EagI CGGCCG 1 cut(s) 847
Eam1104I CTCTTC 2 cut(s) 668, 893
Eam1105I GACNNNNNGTC 1 cut(s) 718
EarI CTCTTC 2 cut(s) 668, 893
EclXI CGGCCG 1 cut(s) 847
Eco31I GGTCTC 2 cut(s) 781, 890
Eco32I GATATC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 1087
Eco52I CGGCCG 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 649
Eco88I CYCGRG 1 cut(s) 872
EcoO109I RGGNCCY 1 cut(s) 1087
EcoRII CCWGG 1 cut(s) 1240
EcoRV GATATC 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 199
FaeI CATG 1 cut(s) 654
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FaqI GGGAC 3 cut(s) 703, 1073, 1258
FatI CATG 1 cut(s) 650
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 123
FblI GTMKAC 2 cut(s) 798, 1107
Fnu4HI GCNGC 6 cut(s) 72, 533, 783, 1098, 1155, 1158
FokI GGATG 2 cut(s) 493, 842
Fsp4HI GCNGC 6 cut(s) 72, 533, 783, 1098, 1155, 1158
FspBI CTAG 4 cut(s) 75, 408, 432, 980
GlaI GCGC 2 cut(s) 531, 786
GluI GCNGC 6 cut(s) 72, 533, 783, 1098, 1155, 1158
GsaI CCCAGC 1 cut(s) 1074
GsuI CTGGAG 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 788
HaeIII GGCC 2 cut(s) 849, 978
HapII CCGG 2 cut(s) 827, 850
HhaI GCGC 2 cut(s) 532, 787
Hin1II CATG 1 cut(s) 654
Hin6I GCGC 2 cut(s) 530, 785
HinP1I GCGC 2 cut(s) 530, 785
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 2 cut(s) 821, 1132
HinfI GANTC 5 cut(s) 254, 371, 713, 719, 1295
HpaII CCGG 2 cut(s) 827, 850
HphI GGTGA 4 cut(s) 601, 650, 722, 1129
Hpy166II GTNNAC 6 cut(s) 6, 561, 648, 799, 1108, 1254
Hpy188I TCNGA 5 cut(s) 259, 304, 718, 1198, 1269
Hpy188III TCNNGA 5 cut(s) 121, 188, 217, 375, 827
Hpy8I GTNNAC 6 cut(s) 6, 561, 648, 799, 1108, 1254
HpyAV CCTTC 3 cut(s) 256, 457, 917
HpyCH4III ACNGT 3 cut(s) 568, 1060, 1309
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 6 cut(s) 197, 596, 734, 1157, 1178, 1209
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 7 cut(s) 312, 715, 741, 778, 864, 1013, 1195
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 1 cut(s) 654
HspAI GCGC 2 cut(s) 530, 785
Kpn2I TCCGGA 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 123, 1258
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 4 cut(s) 544, 1109, 1141, 1169
LweI GCATC 5 cut(s) 184, 295, 394, 471, 605
MaeI CTAG 4 cut(s) 75, 408, 432, 980
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 3 cut(s) 568, 710, 1016
MalI GATC 2 cut(s) 125, 1260
MboI GATC 2 cut(s) 123, 1258
MboII GAAGA 7 cut(s) 152, 203, 655, 665, 880, 889, 1290
MflI RGATCY 1 cut(s) 1258
MluCI AATT 4 cut(s) 139, 696, 892, 971
MlyI GAGTC 2 cut(s) 707, 728
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 7 cut(s) 346, 759, 881, 921, 1204, 1272, 1275
Mph1103I ATGCAT 1 cut(s) 199
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 662
MseI TTAA 4 cut(s) 239, 543, 587, 1185
MspA1I CMGCKG 3 cut(s) 782, 1070, 1160
MspI CCGG 2 cut(s) 827, 850
MspR9I CCNGG 2 cut(s) 851, 1242
MvaI CCWGG 1 cut(s) 1242
MwoI GCNNNNNNNGC 1 cut(s) 791
NciI CCSGG 1 cut(s) 851
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 123, 1258
NlaIII CATG 1 cut(s) 654
NlaIV GGNNCC 1 cut(s) 1089
NmuCI GTSAC 2 cut(s) 710, 1016
NsiI ATGCAT 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 3 cut(s) 254, 371, 1295
PflMI CCANNNNNTGG 2 cut(s) 63, 94
PkrI GCNGC 6 cut(s) 73, 534, 784, 1099, 1156, 1159
PleI GAGTC 2 cut(s) 707, 727
PpsI GAGTC 2 cut(s) 707, 727
PpuMI RGGWCCY 1 cut(s) 1087
PshBI ATTAAT 1 cut(s) 1185
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 1 cut(s) 1240
PspFI CCCAGC 1 cut(s) 1070
PspGI CCWGG 1 cut(s) 1240
PspN4I GGNNCC 1 cut(s) 1089
PspPI GGNCC 1 cut(s) 1087
PspPPI RGGWCCY 1 cut(s) 1087
PstI CTGCAG 1 cut(s) 1159
PsuI RGATCY 1 cut(s) 1258
PvuII CAGCTG 2 cut(s) 1070, 1160
RsaI GTAC 2 cut(s) 560, 1041
RsaNI GTAC 2 cut(s) 559, 1040
SaqAI TTAA 4 cut(s) 239, 543, 587, 1185
SatI GCNGC 6 cut(s) 72, 533, 783, 1098, 1155, 1158
Sau3AI GATC 2 cut(s) 123, 1258
Sau96I GGNCC 1 cut(s) 1087
ScaI AGTACT 1 cut(s) 1041
SchI GAGTC 2 cut(s) 707, 728
ScrFI CCNGG 2 cut(s) 851, 1242
SfaNI GCATC 5 cut(s) 184, 295, 394, 471, 605
SfcI CTRYAG 4 cut(s) 1059, 1065, 1155, 1308
SinI GGWCC 1 cut(s) 1087
SmlI CTYRAG 2 cut(s) 395, 554
SmoI CTYRAG 2 cut(s) 395, 554
Sse9I AATT 4 cut(s) 139, 696, 892, 971
SsiI CCGC 2 cut(s) 71, 782
SspI AATATT 2 cut(s) 630, 1189
SspMI CTAG 4 cut(s) 75, 408, 432, 980
StyD4I CCNGG 2 cut(s) 849, 1240
TaaI ACNGT 3 cut(s) 568, 1060, 1309
TaiI ACGT 1 cut(s) 575
TaqI TCGA 2 cut(s) 181, 252
TasI AATT 4 cut(s) 139, 696, 892, 971
TatI WGTACW 2 cut(s) 558, 1039
TauI GCSGC 2 cut(s) 74, 785
TfiI GAWTC 3 cut(s) 254, 371, 1295
Tru1I TTAA 4 cut(s) 239, 543, 587, 1185
Tru9I TTAA 4 cut(s) 239, 543, 587, 1185
TscAI CASTG 3 cut(s) 598, 1063, 1308
TseFI GTSAC 2 cut(s) 710, 1016
TseI GCWGC 4 cut(s) 532, 1097, 1154, 1157
Tsp45I GTSAC 2 cut(s) 710, 1016
TspDTI ATGAA 4 cut(s) 121, 132, 852, 889
TspGWI ACGGA 2 cut(s) 105, 504
TspRI CASTG 3 cut(s) 598, 1063, 1308
Van91I CCANNNNNTGG 2 cut(s) 63, 94
VpaK11BI GGWCC 1 cut(s) 1087
VspI ATTAAT 1 cut(s) 1185
XmiI GTMKAC 2 cut(s) 798, 1107
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 4 cut(s) 75, 408, 432, 980
ZrmI AGTACT 1 cut(s) 1041
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.