Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006185.1

Orthogroup ID

OG0005884

Physical Location & Seq

Genomic Coordinates Reverse (-)

29519 .. 32884

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006185.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atgaaaagtgaaggtttgaagtgggttttaggtttgatatacatatttgctgttgcatctatttggatagctgctagttttgttgtacagtcggttgtggatgccggtgtgtccccttttcttattacctacatatgcaattcattgtttgtgatctacattcccttggttgaagccgggcgctatttggaggattcgtttggagggttttggtttgggaaaagtaaggagagtagtcctttgcgagagttggtggagtcggagcaatccactcttcttggagacggtgatgctgttgcgaaaactgatgatgcatctgtgcatgtagaagagggagaaattggcgggcatggaaaagttattgatggagaagtgaaagttgtggcgtatgagcctattaggatatcagcgaatctgtctgaaatcgatgaagttgctgataagcaagtggatgaaaaagggcgttggacacgtactcgagtggcaaaagttagcctattgatttccccattttggtttttcgcacagctcactttcaatttgtcattgaagtatactacagtcacatcaaataccatcttaagcagtgcatccagcctgttcacctttttggtctctcttgcattcttaggtgagaacttcactttggtgaagcttttcagtgttcttctttgcatgggaggaacgataattgtcagcctcggtgactcacgaacttctctaagtgcaattgcttcaaaccctctactgggagacatacttgctcttgtctcagcagctttgtattctgtgtatattaccctcattcgcaagaagttacctgatgaggatgatgagaaaagtggccgtgctagtatggctcagtttctcggatttttagggctttctaactttttaatatttcttccagttgcccttgtattgcatttctcaaagttggaacccttttatatactgacctggaagcagcttggtctcattgttggtaaaggtttgctggataacgttctgagcgattacttatgggccaaggctgttcttctaacaacaaccacagtagcaacagctggtctatcaatacaagttccgttggcagcaattgtggactccgtgactggccatgctcctcattttgctgattactttggagctgtggctgttatgattggatttgttggcattaatattccttctgatgcttttaagaggtcggaaggagctacactagaattagagaaaggaaataatagaaatagtagttcaattagtgaacctggtggttcatcaggtccagattcaactgcccattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

437

Amino Acids

46.99

Weight (kDa)

5.04

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07080
fragaria_vesca	FvH4_2g19180 FvH4_2g19180 FvH4_2g19180 FvH4_2g19180 FvH4_2g19180
malus_domestica	MD04G1105300.v1.1 MD05G1176400.v1.1 MD05G1176600.v1.1 MD10G1165300.v1.1
prunus_persica	Prupe.8G203700_v2.0.a1 Prupe.8G203700_v2.0.a1 Prupe.8G203700_v2.0.a1
pyrus_communis	pycom05g16280 pycom10g14260
rosa_chinensis	RchiOBHm_Chr6g0284971
rosa_laevigata	RLG00000012694
rosa_multiflora	Rmu_sc0004961.1_g000021 Rmu_sc0006185.1_g000007
rosa_roxburghii	Rroxscaffold_7G00183880 Rroxscaffold_7G00184160
rosa_rugosa	Rorug06G0169400 Rorug06G0169500
rosa_samantha	Rh6AG281100 Rh6BG281800 Rh6CG283500 Rh6DG276600
rosa_wichuraiana	Rw6G024160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	554
AciI	CCGC	1 cut(s)	345
AclI	AACGTT	1 cut(s)	1005
AcoI	YGGCCR	2 cut(s)	844, 1117
AfaI	GTAC	2 cut(s)	87, 475
AfiI	CCNNNNNNNGG	3 cut(s)	513, 748, 749
AflII	CTTAAG	1 cut(s)	580
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	7 cut(s)	19, 173, 538, 550, 738, 1263, 1299
AjnI	CCWGG	2 cut(s)	959, 1273
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	8 cut(s)	71, 529, 655, 779, 970, 1067, 1151, 1220
AluI	AGCT	8 cut(s)	71, 529, 655, 779, 970, 1067, 1151, 1220
Alw26I	GTCTC	5 cut(s)	276, 619, 747, 775, 980
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	3 cut(s)	844, 1026, 1117
ApeKI	GCWGC	4 cut(s)	71, 776, 967, 1094
AseI	ATTAAT	1 cut(s)	1182
Asp700I	GAANNNNTTC	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	1026, 1289
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	5 cut(s)	299, 595, 644, 661, 716
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	1289
BalI	TGGCCA	1 cut(s)	1119
BbvI	GCAGC	4 cut(s)	58, 788, 979, 1106
BccI	CCATC	2 cut(s)	359, 584
BceAI	ACGGC	1 cut(s)	831
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	2 cut(s)	961, 1275
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	5 cut(s)	276, 619, 747, 775, 980
BfaI	CTAG	3 cut(s)	75, 852, 1226
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	184
BfrI	CTTAAG	1 cut(s)	580
BisI	GCNGC	4 cut(s)	72, 777, 968, 1095
BlsI	GCNGC	4 cut(s)	73, 778, 969, 1096
Bme1390I	CCNGG	3 cut(s)	178, 961, 1275
Bme18I	GGWCC	1 cut(s)	1289
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	2 cut(s)	1026, 1289
BmiI	GGNNCC	1 cut(s)	942
BmrFI	CCNGG	3 cut(s)	178, 961, 1275
BmrI	ACTGGG	1 cut(s)	758
BmsI	GCATC	7 cut(s)	65, 91, 280, 301, 323, 599, 1186
BmuI	ACTGGG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	473
BsaI	GGTCTC	2 cut(s)	619, 980
BsaJI	CCNNGG	3 cut(s)	165, 700, 1029
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	513, 748, 749
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	753, 908, 1120
BseBI	CCWGG	2 cut(s)	961, 1275
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	165, 700, 1029
BseGI	GGATG	4 cut(s)	106, 457, 590, 835
BseLI	CCNNNNNNNGG	3 cut(s)	513, 748, 749
BseMII	CTCAG	3 cut(s)	786, 875, 1001
BseNI	ACTGG	3 cut(s)	753, 908, 1120
BseRI	GAGGAG	1 cut(s)	1116
BseXI	GCAGC	4 cut(s)	58, 788, 979, 1106
BshFI	GGCC	3 cut(s)	846, 1028, 1119
BshVI	ATCGAT	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	105, 177
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	513, 748, 749
BsmAI	GTCTC	5 cut(s)	276, 619, 747, 775, 980
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	3 cut(s)	846, 1028, 1119
Bso31I	GGTCTC	2 cut(s)	619, 980
BsoBI	CYCGRG	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	3 cut(s)	846, 1028, 1119
BspCNI	CTCAG	3 cut(s)	785, 874, 1002
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	942
BspTI	CTTAAG	1 cut(s)	580
BspTNI	GGTCTC	2 cut(s)	619, 980
BsrFI	RCCGGY	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	85
BsrI	ACTGG	3 cut(s)	753, 908, 1120
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	3 cut(s)	165, 700, 1029
BssMI	GATC	1 cut(s)	153
BssNAI	GTATAC	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	165, 1029
Bst1107I	GTATAC	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	961, 1275
Bst4CI	ACNGT	4 cut(s)	90, 287, 562, 1057
Bst6I	CTCTTC	2 cut(s)	279, 324
BstAFI	CTTAAG	1 cut(s)	580
BstAUI	TGTACA	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	628, 722, 772, 861, 1010
BstF5I	GGATG	4 cut(s)	106, 457, 590, 835
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	5 cut(s)	276, 619, 747, 775, 980
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstNI	CCWGG	2 cut(s)	961, 1275
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	176, 959, 1273
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	4 cut(s)	58, 788, 979, 1106
BstZ17I	GTATAC	1 cut(s)	555
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	846, 1028, 1119
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	106, 457, 590, 835
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	2 cut(s)	592, 667
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	1026, 1289
ClaI	ATCGAT	1 cut(s)	426
CsiI	ACCWGGT	1 cut(s)	1273
Csp6I	GTAC	2 cut(s)	86, 474
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	4 cut(s)	323, 350, 676, 1121
CviQI	GTAC	2 cut(s)	86, 474
DdeI	CTNAG	5 cut(s)	628, 722, 772, 861, 1010
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	2 cut(s)	844, 1117
Eam1104I	CTCTTC	2 cut(s)	279, 324
EarI	CTCTTC	2 cut(s)	279, 324
Eco130I	CCWWGG	2 cut(s)	165, 1029
Eco31I	GGTCTC	2 cut(s)	619, 980
Eco32I	GATATC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	1289
Eco88I	CYCGRG	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	959, 1273
EcoRV	GATATC	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	165, 1029
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	2 cut(s)	165, 1029
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	326, 353, 679, 1124
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	4 cut(s)	322, 349, 675, 1120
FauI	CCCGC	1 cut(s)	338
FauNDI	CATATG	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	4 cut(s)	72, 777, 968, 1095
FokI	GGATG	4 cut(s)	113, 464, 577, 842
Fsp4HI	GCNGC	4 cut(s)	72, 777, 968, 1095
FspBI	CTAG	3 cut(s)	75, 852, 1226
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	4 cut(s)	72, 777, 968, 1095
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	846, 1028, 1119
HapII	CCGG	2 cut(s)	105, 177
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	4 cut(s)	326, 353, 679, 1124
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	6 cut(s)	194, 257, 412, 707, 1106, 1295
HpaII	CCGG	2 cut(s)	105, 177
HphI	GGTGA	5 cut(s)	299, 595, 644, 661, 716
Hpy166II	GTNNAC	4 cut(s)	555, 603, 1105, 1271
Hpy188I	TCNGA	6 cut(s)	262, 421, 872, 1011, 1195, 1213
Hpy188III	TCNNGA	2 cut(s)	711, 1292
Hpy8I	GTNNAC	4 cut(s)	555, 603, 1105, 1271
HpyAV	CCTTC	3 cut(s)	5, 1200, 1208
HpyCH4III	ACNGT	4 cut(s)	90, 287, 562, 1057
HpyCH4IV	ACGT	2 cut(s)	472, 1005
HpyCH4V	TGCA	9 cut(s)	56, 138, 314, 322, 590, 623, 675, 728, 925
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HpyF3I	CTNAG	5 cut(s)	628, 722, 772, 861, 1010
HpySE526I	ACGT	2 cut(s)	472, 1005
Hsp92II	CATG	4 cut(s)	326, 353, 679, 1124
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	4 cut(s)	262, 1129, 1148, 1217
Lsp1109I	GCAGC	4 cut(s)	58, 788, 979, 1106
LweI	GCATC	7 cut(s)	65, 91, 280, 301, 323, 599, 1186
MabI	ACCWGGT	1 cut(s)	1273
MaeI	CTAG	3 cut(s)	75, 852, 1226
MaeII	ACGT	2 cut(s)	472, 1005
MaeIII	GTNAC	4 cut(s)	562, 704, 816, 1111
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	5 cut(s)	266, 341, 659, 896, 1031
MfeI	CAATTG	2 cut(s)	729, 1098
MlsI	TGGCCA	1 cut(s)	1119
MluCI	AATT	8 cut(s)	139, 339, 538, 690, 729, 1098, 1229, 1263
MluNI	TGGCCA	1 cut(s)	1119
MlyI	GAGTC	3 cut(s)	266, 701, 1100
MmeI	TCCRAC	4 cut(s)	240, 446, 918, 1191
Mox20I	TGGCCA	1 cut(s)	1119
Mph1103I	ATGCAT	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	656
MscI	TGGCCA	1 cut(s)	1119
MseI	TTAA	4 cut(s)	581, 896, 1182, 1203
MslI	CAYNNNNRTG	1 cut(s)	647
Msp20I	TGGCCA	1 cut(s)	1119
MspA1I	CMGCKG	1 cut(s)	1067
MspCI	CTTAAG	1 cut(s)	580
MspI	CCGG	2 cut(s)	105, 177
MspR9I	CCNGG	3 cut(s)	178, 961, 1275
MunI	CAATTG	2 cut(s)	729, 1098
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	961, 1275
MwoI	GCNNNNNNNGC	1 cut(s)	857
NciI	CCSGG	1 cut(s)	178
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	4 cut(s)	326, 353, 679, 1124
NlaIV	GGNNCC	1 cut(s)	942
NmuCI	GTSAC	3 cut(s)	562, 704, 1111
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	326
OliI	CACNNNNGTG	1 cut(s)	647
PaeR7I	CTCGAG	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	1011
PctI	GAATGC	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	194, 412, 1295
PkrI	GCNGC	4 cut(s)	73, 778, 969, 1096
PleI	GAGTC	3 cut(s)	265, 701, 1100
PpsI	GAGTC	3 cut(s)	265, 701, 1100
Ppu21I	YACGTR	1 cut(s)	473
PshBI	ATTAAT	1 cut(s)	1182
Psp1406I	AACGTT	1 cut(s)	1005
Psp6I	CCWGG	2 cut(s)	959, 1273
PspGI	CCWGG	2 cut(s)	959, 1273
PspN4I	GGNNCC	1 cut(s)	942
PspPI	GGNCC	2 cut(s)	1026, 1289
PspXI	VCTCGAGB	1 cut(s)	477
PvuII	CAGCTG	1 cut(s)	1067
RsaI	GTAC	2 cut(s)	87, 475
RsaNI	GTAC	2 cut(s)	86, 474
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	4 cut(s)	581, 896, 1182, 1203
SatI	GCNGC	4 cut(s)	72, 777, 968, 1095
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	1026, 1289
SchI	GAGTC	3 cut(s)	266, 701, 1100
ScrFI	CCNGG	3 cut(s)	178, 961, 1275
SexAI	ACCWGGT	1 cut(s)	1273
SfaNI	GCATC	7 cut(s)	65, 91, 280, 301, 323, 599, 1186
SfcI	CTRYAG	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	1289
SlaI	CTCGAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	477, 580
SmoI	CTYRAG	2 cut(s)	477, 580
Sse9I	AATT	8 cut(s)	139, 339, 538, 690, 729, 1098, 1229, 1263
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	2 cut(s)	900, 1186
SspMI	CTAG	3 cut(s)	75, 852, 1226
StyD4I	CCNGG	3 cut(s)	176, 959, 1273
StyI	CCWWGG	2 cut(s)	165, 1029
TaaI	ACNGT	4 cut(s)	90, 287, 562, 1057
TaiI	ACGT	2 cut(s)	475, 1008
TaqI	TCGA	2 cut(s)	426, 478
TasI	AATT	8 cut(s)	139, 339, 538, 690, 729, 1098, 1229, 1263
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	3 cut(s)	194, 412, 1295
Tru1I	TTAA	4 cut(s)	581, 896, 1182, 1203
Tru9I	TTAA	4 cut(s)	581, 896, 1182, 1203
TscAI	CASTG	2 cut(s)	592, 667
TseFI	GTSAC	3 cut(s)	562, 704, 1111
TseI	GCWGC	4 cut(s)	71, 776, 967, 1094
Tsp45I	GTSAC	3 cut(s)	562, 704, 1111
TspDTI	ATGAA	6 cut(s)	17, 132, 444, 468, 1272, 1299
TspGWI	ACGGA	2 cut(s)	1077, 1099
TspRI	CASTG	2 cut(s)	592, 667
Vha464I	CTTAAG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	1289
VspI	ATTAAT	1 cut(s)	1182
XceI	RCATGY	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	477
XmiI	GTMKAC	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	3 cut(s)	75, 852, 1226
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.