Rmu_sc0004961.1_g000021

Thiamine-repressible mitochondrial transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004961.1
OG0005884
Physical Location & Seq
Reverse (-)
67368 .. 67700
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004961.1_g000021.1.cds

Sequence Viewer

Length: 333 bp
atgtgtttaggtttgctggataacgttctgagcgattacttatgggccaaggctgttcttctaacaacaaccacagtagcaacagctggtctatcaatacaagttccgttggcagcaattgtggactccgtgactggccatgctcctcattttgctgattactttggagctgtggctgttatgattggatttgttggcattaatattccttctgatgcttttaagaggtcggaaggagctacactagaattagagaaaggaaataatagaaatagtagttcaattagtgaacctggtagttcatcaggtccagattcaactgcccattcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

110

Amino Acids

11.32

Weight (kDa)

4.8

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 136
AgsI TTSAA 2 cut(s) 282, 318
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 3 cut(s) 86, 170, 239
AluI AGCT 3 cut(s) 86, 170, 239
AoxI GGCC 2 cut(s) 45, 136
ApeKI GCWGC 1 cut(s) 113
AseI ATTAAT 1 cut(s) 201
AspS9I GGNCC 2 cut(s) 45, 308
AvaII GGWCC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 138
BbvI GCAGC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 294
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 45, 308
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 2 cut(s) 47, 138
BsnI GGCC 2 cut(s) 47, 138
BspANI GGCC 2 cut(s) 47, 138
BspCNI CTCAG 1 cut(s) 21
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 29
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 47, 138
Cfr13I GGNCC 2 cut(s) 45, 308
CsiI ACCWGGT 1 cut(s) 292
CviAII CATG 1 cut(s) 140
CviJI RGCY 7 cut(s) 47, 53, 86, 138, 170, 176, 239
CviKI_1 RGCY 7 cut(s) 47, 53, 86, 138, 170, 176, 239
DdeI CTNAG 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 143
FaiI YATR 4 cut(s) 43, 141, 182, 331
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 47, 138
Hin1II CATG 1 cut(s) 143
HinfI GANTC 2 cut(s) 125, 314
Hpy166II GTNNAC 2 cut(s) 124, 290
Hpy188I TCNGA 3 cut(s) 30, 214, 232
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 2 cut(s) 124, 290
HpyAV CCTTC 2 cut(s) 219, 227
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 143
LmnI GCTCC 3 cut(s) 148, 167, 236
LpnPI CCDG 7 cut(s) 2, 72, 120, 279, 291, 306, 324
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 205
MabI ACCWGGT 1 cut(s) 292
MaeI CTAG 1 cut(s) 245
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 117
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 3 cut(s) 117, 248, 282
MluNI TGGCCA 1 cut(s) 138
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 2 cut(s) 156, 219
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 2 cut(s) 201, 222
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 294
NlaIII CATG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PshBI ATTAAT 1 cut(s) 201
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspPI GGNCC 2 cut(s) 45, 308
PvuII CAGCTG 1 cut(s) 86
SaqAI TTAA 2 cut(s) 201, 222
SatI GCNGC 1 cut(s) 114
Sau96I GGNCC 2 cut(s) 45, 308
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 294
SetI ASST 8 cut(s) 13, 27, 88, 172, 230, 241, 295, 310
SexAI ACCWGGT 1 cut(s) 292
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 308
Sse9I AATT 3 cut(s) 117, 248, 282
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 27
TasI AATT 3 cut(s) 117, 248, 282
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 2 cut(s) 201, 222
Tru9I TTAA 2 cut(s) 201, 222
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 291, 318
TspGWI ACGGA 2 cut(s) 96, 118
VpaK11BI GGWCC 1 cut(s) 308
VspI ATTAAT 1 cut(s) 201
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.