Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005884

Physical Location & Seq

Genomic Coordinates Reverse (-)

19615641 .. 19617360

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAAAACTGAAGTTTGGAAGTGGGTTTTAGGTTTGATATACATATTTGCTGTTGCATCCATCTGGATAGCTGCCAGTTTCGTAGTACAGTCGGTGGTAGATGCCGGTGTGTCCCCGTTCCTCATCACATACATATGCAATTCTCTGTTTGTGATCTACATTCCCTTAGTTGAAATCGGGCGGTATTTGGAGGATAATTTTGAGGGGTTTTGGATTTGGAGAAGTAGGAAGAGTAGCCCTTTGCAAAGGTTAGGAGAGTCGGAGCAAATCACTCTCCTTGAGGAGACTGATGGAGTTGTGATAGCGGATGCGGAAGAGGGAGAAGTTAATCCTGGTGTAGAACCGAAAGGTGTATCATACGAGCTTGTTGGGATTTCAGCAACTCAAGACAATGTCACTGAAACGGTAGATAAGCTAGTGGATGGGAAGGGGCGTTGGACACGAACCCGAGTGGCTAAAGTTAGCTTACTGATTTCCCCGTTTTGGTTTTTTGCACAGCTGACTTTCAATTTGTCATTGAAGTATACTACCGTTACATCGAATACCATCTTAAGCAGTTCATCCAGCCTTTTCACCTTTTTGGTCTCCCTAGTATTCTTAGGGGAGAAGTTTACTTTGGTTAAGCTTATTAGCGTTCTTCTTTGCATGGGAGGAACGATAATTGTCAGCCTTGGTGACTCACGAACTGCTCTAAGTGCAATTGCTTCAAACCCTCTCCTCGGAGACATACTTGCTCTTGTCTCGGCGGCCTTGTATTCTGTCTATATTACCCTCATTCGCAAGAAATTACCCGATGAAGATGATGAAAAAAGCGGCCGTGCCAGTATGGCTCAGTTTCTAGGATTTTTAGGGCTTTCCAACCTTCTTATATTTCTTCCGGTTGCCCTTATACTTCATTTCTCAAAGCTAGAGCCGTTTTATATGCTTACATGGGAGCAGGTTGGTCTCATCGTTGGTAAAGGCTTGTTGGATAATGTTCTGAGTGACTACTTATGGGCCAAGGCCGTTCTTCTAACAACCACCACGGTAGCAACAGCCGGTCTGACAATCCAGGTTCCATTGGCGGCAATTGTGGACTCGATGACTGGCAACGCACCTCATTTTGCTGATTACCTTGGAGCAGGGGCTGTCATGATCGGATTCGCTGGCATAAACATTCCCTCTGATGCTTTTAACAGACCAAAAGAAGCCATACTTGTGTTAGAGAACGAAAATCTCAGCGAGACCAGTGAACGTCGCAATGCATCGGGCACAGGAAGGCCGGTTTCAGCTGCCTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

428

Amino Acids

46.4

Weight (kDa)

4.92

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07080
fragaria_vesca	FvH4_2g19180 FvH4_2g19180 FvH4_2g19180 FvH4_2g19180 FvH4_2g19180
malus_domestica	MD04G1105300.v1.1 MD05G1176400.v1.1 MD05G1176600.v1.1 MD10G1165300.v1.1
prunus_persica	Prupe.8G203700_v2.0.a1 Prupe.8G203700_v2.0.a1 Prupe.8G203700_v2.0.a1
pyrus_communis	pycom05g16280 pycom10g14260
rosa_chinensis	RchiOBHm_Chr6g0284971
rosa_laevigata	RLG00000012694
rosa_multiflora	Rmu_sc0004961.1_g000021 Rmu_sc0006185.1_g000007
rosa_roxburghii	Rroxscaffold_7G00183880 Rroxscaffold_7G00184160
rosa_rugosa	Rorug06G0169400 Rorug06G0169500
rosa_samantha	Rh6AG281100 Rh6BG281800 Rh6CG283500 Rh6DG276600
rosa_wichuraiana	Rw6G024160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	928
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	6 cut(s)	181, 305, 311, 746, 813, 1064
AcoI	YGGCCR	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	483, 719
AflII	CTTAAG	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	173, 508, 520, 708
AjnI	CCWGG	2 cut(s)	331, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	8 cut(s)	71, 364, 415, 465, 499, 625, 907, 1271
AluI	AGCT	8 cut(s)	71, 364, 415, 465, 499, 625, 907, 1271
Alw26I	GTCTC	6 cut(s)	278, 589, 717, 745, 950, 1217
AlwNI	CAGNNNCTG	1 cut(s)	1127
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	5 cut(s)	747, 814, 996, 1002, 1259
ApeKI	GCWGC	2 cut(s)	71, 1271
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
AspS9I	GGNCC	1 cut(s)	996
AsuHPI	GGTGA	2 cut(s)	565, 686
AvaI	CYCGRG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	1253
BbvI	GCAGC	2 cut(s)	58, 1258
BccI	CCATC	4 cut(s)	68, 284, 416, 554
BceAI	ACGGC	3 cut(s)	801, 898, 989
BciT130I	CCWGG	2 cut(s)	333, 1052
BcoDI	GTCTC	6 cut(s)	278, 589, 717, 745, 950, 1217
BfaI	CTAG	4 cut(s)	416, 590, 839, 908
BfrI	CTTAAG	1 cut(s)	550
BfuAI	ACCTGC	1 cut(s)	928
BglI	GCCNNNNNGGC	1 cut(s)	827
BisI	GCNGC	5 cut(s)	72, 747, 814, 1065, 1272
BlsI	GCNGC	5 cut(s)	73, 748, 815, 1066, 1273
Bme1390I	CCNGG	2 cut(s)	333, 1052
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	996
BmiI	GGNNCC	1 cut(s)	1056
BmrFI	CCNGG	2 cut(s)	333, 1052
BmsI	GCATC	5 cut(s)	65, 91, 298, 1156, 1253
BpuEI	CTTGAG	2 cut(s)	299, 369
BsaI	GGTCTC	3 cut(s)	589, 950, 1217
BsaJI	CCNNGG	5 cut(s)	670, 718, 999, 1023, 1114
BsaWI	WCCGGW	1 cut(s)	877
Bsc4I	CCNNNNNNNGG	2 cut(s)	483, 719
Bse118I	RCCGGY	3 cut(s)	104, 1037, 1261
Bse1I	ACTGG	4 cut(s)	75, 822, 1090, 1227
Bse3DI	GCAATG	1 cut(s)	1246
BseBI	CCWGG	2 cut(s)	333, 1052
BseDI	CCNNGG	5 cut(s)	670, 718, 999, 1023, 1114
BseGI	GGATG	4 cut(s)	56, 313, 427, 560
BseLI	CCNNNNNNNGG	2 cut(s)	483, 719
BseMI	GCAATG	1 cut(s)	1246
BseMII	CTCAG	3 cut(s)	845, 971, 1231
BseNI	ACTGG	4 cut(s)	75, 822, 1090, 1227
BseRI	GAGGAG	2 cut(s)	296, 707
BseSI	GKGCMC	1 cut(s)	1253
BseX3I	CGGCCG	1 cut(s)	814
BseXI	GCAGC	2 cut(s)	58, 1258
Bsh1285I	CGRYCG	1 cut(s)	817
BshFI	GGCC	5 cut(s)	749, 816, 998, 1004, 1261
BsiEI	CGRYCG	1 cut(s)	817
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	4 cut(s)	105, 878, 1038, 1262
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	483, 719
BsmAI	GTCTC	6 cut(s)	278, 589, 717, 745, 950, 1217
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	5 cut(s)	749, 816, 998, 1004, 1261
Bso31I	GGTCTC	3 cut(s)	589, 950, 1217
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	1253
Bsp143I	GATC	2 cut(s)	153, 1134
BspACI	CCGC	6 cut(s)	181, 305, 311, 746, 813, 1064
BspANI	GGCC	5 cut(s)	749, 816, 998, 1004, 1261
BspCNI	CTCAG	3 cut(s)	844, 972, 1230
BspHI	TCATGA	1 cut(s)	1131
BspLI	GGNNCC	1 cut(s)	1056
BspMI	ACCTGC	1 cut(s)	928
BspTI	CTTAAG	1 cut(s)	550
BspTNI	GGTCTC	3 cut(s)	589, 950, 1217
BsrDI	GCAATG	1 cut(s)	1246
BsrFI	RCCGGY	3 cut(s)	104, 1037, 1261
BsrI	ACTGG	4 cut(s)	75, 822, 1090, 1227
BssAI	RCCGGY	3 cut(s)	104, 1037, 1261
BssECI	CCNNGG	5 cut(s)	670, 718, 999, 1023, 1114
BssMI	GATC	2 cut(s)	153, 1134
BssNAI	GTATAC	1 cut(s)	525
BssT1I	CCWWGG	3 cut(s)	670, 999, 1114
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	333, 1052
Bst4CI	ACNGT	4 cut(s)	90, 406, 532, 1027
Bst6I	CTCTTC	2 cut(s)	224, 309
BstAFI	CTTAAG	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	1147
BstDEI	CTNAG	6 cut(s)	166, 598, 692, 831, 980, 1217
BstDSI	CCRYGG	1 cut(s)	1023
BstF5I	GGATG	4 cut(s)	56, 313, 427, 560
BstKTI	GATC	2 cut(s)	156, 1137
BstMAI	GTCTC	6 cut(s)	278, 589, 717, 745, 950, 1217
BstMBI	GATC	2 cut(s)	153, 1134
BstMCI	CGRYCG	1 cut(s)	817
BstMWI	GCNNNNNNNGC	2 cut(s)	695, 827
BstNI	CCWGG	2 cut(s)	333, 1052
BstSCI	CCNGG	2 cut(s)	331, 1050
BstSLI	GKGCMC	1 cut(s)	1253
BstV1I	GCAGC	2 cut(s)	58, 1258
BstZ17I	GTATAC	1 cut(s)	525
BstZI	CGGCCG	1 cut(s)	814
BsuRI	GGCC	5 cut(s)	749, 816, 998, 1004, 1261
BtgI	CCRYGG	1 cut(s)	1023
BtsCI	GGATG	4 cut(s)	56, 313, 427, 560
BtsIMutI	CAGTG	2 cut(s)	396, 1234
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	1 cut(s)	1147
CaiI	CAGNNNCTG	1 cut(s)	1127
CciI	TCATGA	1 cut(s)	1131
Cfr10I	RCCGGY	3 cut(s)	104, 1037, 1261
Cfr13I	GGNCC	1 cut(s)	996
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	646, 930, 1132
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	6 cut(s)	166, 598, 692, 831, 980, 1217
DpnI	GATC	2 cut(s)	155, 1136
DpnII	GATC	2 cut(s)	153, 1134
EaeI	YGGCCR	1 cut(s)	814
EagI	CGGCCG	1 cut(s)	814
Eam1104I	CTCTTC	2 cut(s)	224, 309
EarI	CTCTTC	2 cut(s)	224, 309
EclXI	CGGCCG	1 cut(s)	814
Eco130I	CCWWGG	3 cut(s)	670, 999, 1114
Eco31I	GGTCTC	3 cut(s)	589, 950, 1217
Eco52I	CGGCCG	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	331, 1050
EcoT14I	CCWWGG	3 cut(s)	670, 999, 1114
EcoT22I	ATGCAT	1 cut(s)	1246
ErhI	CCWWGG	3 cut(s)	670, 999, 1114
FaeI	CATG	3 cut(s)	649, 933, 1135
FalI	AAGNNNNNCTT	2 cut(s)	1179, 1211
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	3 cut(s)	645, 929, 1131
FauNDI	CATATG	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	5 cut(s)	72, 747, 814, 1065, 1272
FokI	GGATG	4 cut(s)	43, 320, 434, 547
Fsp4HI	GCNGC	5 cut(s)	72, 747, 814, 1065, 1272
FspBI	CTAG	4 cut(s)	416, 590, 839, 908
GluI	GCNGC	5 cut(s)	72, 747, 814, 1065, 1272
HaeIII	GGCC	5 cut(s)	749, 816, 998, 1004, 1261
HapII	CCGG	4 cut(s)	105, 878, 1038, 1262
Hin1II	CATG	3 cut(s)	649, 933, 1135
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	4 cut(s)	257, 677, 1076, 1140
HpaII	CCGG	4 cut(s)	105, 878, 1038, 1262
HphI	GGTGA	2 cut(s)	565, 686
Hpy166II	GTNNAC	4 cut(s)	525, 612, 1075, 1232
Hpy188I	TCNGA	6 cut(s)	262, 722, 981, 1044, 1139, 1165
Hpy188III	TCNNGA	4 cut(s)	64, 386, 681, 1132
Hpy8I	GTNNAC	4 cut(s)	525, 612, 1075, 1232
Hpy99I	CGWCG	1 cut(s)	1239
HpyAV	CCTTC	3 cut(s)	421, 872, 1251
HpyCH4III	ACNGT	4 cut(s)	90, 406, 532, 1027
HpyCH4IV	ACGT	1 cut(s)	1234
HpyCH4V	TGCA	7 cut(s)	56, 138, 244, 494, 645, 698, 1244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	695, 827
HpyF3I	CTNAG	6 cut(s)	166, 598, 692, 831, 980, 1217
HpySE526I	ACGT	1 cut(s)	1234
Hsp92II	CATG	3 cut(s)	649, 933, 1135
Kzo9I	GATC	2 cut(s)	153, 1134
LmnI	GCTCC	3 cut(s)	262, 934, 1118
Lsp1109I	GCAGC	2 cut(s)	58, 1258
LweI	GCATC	5 cut(s)	65, 91, 298, 1156, 1253
MaeI	CTAG	4 cut(s)	416, 590, 839, 908
MaeII	ACGT	1 cut(s)	1234
MaeIII	GTNAC	4 cut(s)	394, 532, 674, 983
MalI	GATC	2 cut(s)	155, 1136
MboI	GATC	2 cut(s)	153, 1134
MboII	GAAGA	7 cut(s)	241, 326, 629, 809, 866, 1001, 1269
MfeI	CAATTG	2 cut(s)	699, 1068
MhlI	GDGCHC	1 cut(s)	1253
MluCI	AATT	7 cut(s)	139, 196, 508, 660, 699, 785, 1068
MlyI	GAGTC	3 cut(s)	266, 671, 1070
MmeI	TCCRAC	4 cut(s)	240, 416, 882, 948
Mph1103I	ATGCAT	1 cut(s)	1246
MseI	TTAA	4 cut(s)	327, 551, 621, 1173
MslI	CAYNNNNRTG	2 cut(s)	133, 1196
MspA1I	CMGCKG	2 cut(s)	499, 1271
MspCI	CTTAAG	1 cut(s)	550
MspI	CCGG	4 cut(s)	105, 878, 1038, 1262
MspR9I	CCNGG	2 cut(s)	333, 1052
MunI	CAATTG	2 cut(s)	699, 1068
MvaI	CCWGG	2 cut(s)	333, 1052
MwoI	GCNNNNNNNGC	2 cut(s)	695, 827
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	2 cut(s)	153, 1134
NlaIII	CATG	3 cut(s)	649, 933, 1135
NlaIV	GGNNCC	1 cut(s)	1056
NmeAIII	GCCGAG	1 cut(s)	722
NmuCI	GTSAC	3 cut(s)	394, 674, 983
NsiI	ATGCAT	1 cut(s)	1246
PagI	TCATGA	1 cut(s)	1131
PfeI	GAWTC	1 cut(s)	1140
PflFI	GACNNNGTC	1 cut(s)	392
PkrI	GCNGC	5 cut(s)	73, 748, 815, 1066, 1273
PleI	GAGTC	3 cut(s)	265, 671, 1070
PpsI	GAGTC	3 cut(s)	265, 671, 1070
Psp6I	CCWGG	2 cut(s)	331, 1050
PspGI	CCWGG	2 cut(s)	331, 1050
PspN4I	GGNNCC	1 cut(s)	1056
PspPI	GGNCC	1 cut(s)	996
PstNI	CAGNNNCTG	1 cut(s)	1127
PsyI	GACNNNGTC	1 cut(s)	392
PvuII	CAGCTG	2 cut(s)	499, 1271
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	2 cut(s)	133, 1196
SaqAI	TTAA	4 cut(s)	327, 551, 621, 1173
SatI	GCNGC	5 cut(s)	72, 747, 814, 1065, 1272
Sau3AI	GATC	2 cut(s)	153, 1134
Sau96I	GGNCC	1 cut(s)	996
SchI	GAGTC	3 cut(s)	266, 671, 1070
ScrFI	CCNGG	2 cut(s)	333, 1052
SduI	GDGCHC	1 cut(s)	1253
SfaNI	GCATC	5 cut(s)	65, 91, 298, 1156, 1253
SmiMI	CAYNNNNRTG	2 cut(s)	133, 1196
SmlI	CTYRAG	3 cut(s)	278, 384, 550
SmoI	CTYRAG	3 cut(s)	278, 384, 550
Sse9I	AATT	7 cut(s)	139, 196, 508, 660, 699, 785, 1068
SsiI	CCGC	6 cut(s)	181, 305, 311, 746, 813, 1064
SspMI	CTAG	4 cut(s)	416, 590, 839, 908
StyD4I	CCNGG	2 cut(s)	331, 1050
StyI	CCWWGG	3 cut(s)	670, 999, 1114
TaaI	ACNGT	4 cut(s)	90, 406, 532, 1027
TaiI	ACGT	1 cut(s)	1237
TaqI	TCGA	2 cut(s)	539, 1079
TasI	AATT	7 cut(s)	139, 196, 508, 660, 699, 785, 1068
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	3 cut(s)	749, 816, 1067
TfiI	GAWTC	1 cut(s)	1140
Tru1I	TTAA	4 cut(s)	327, 551, 621, 1173
Tru9I	TTAA	4 cut(s)	327, 551, 621, 1173
TscAI	CASTG	2 cut(s)	403, 1234
TseFI	GTSAC	3 cut(s)	394, 674, 983
TseI	GCWGC	2 cut(s)	71, 1271
Tsp45I	GTSAC	3 cut(s)	394, 674, 983
TspDTI	ATGAA	6 cut(s)	17, 549, 810, 819, 884, 1269
TspRI	CASTG	2 cut(s)	403, 1234
Tth111I	GACNNNGTC	1 cut(s)	392
Vha464I	CTTAAG	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	4 cut(s)	416, 590, 839, 908
Zsp2I	ATGCAT	1 cut(s)	1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.