AT3G07860

U11 U12 small nuclear ribonucleoprotein 25 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003844
Physical Location & Seq
Forward (+)
2507880 .. 2509589
1710 bp
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UTR
Exon/CDS
Intron
AT3G07860.1

Sequence Viewer

Length: 498 bp
ATGGAGAGCGGCGATTACGATGTTGAGACGAAAAGAGAGAAGCTTAAATCGGTTCTCTCTCAGCTCCTTGCTGATCCGATTCTCGCCGACGTTCCGAGGAATCCAACACTTTCTGATGTCGTCACTCTTGTCAGCCTTGAGAAGGGAAGCGCTATGCGTCTCTCCGTCGTCAAGCTCGACGGCTCCTCCCTTGATGTGGCGGTCATGAATTCAGCTACTTTGAAAGATCTGAAGCTTTTGATCAAGAAGAAAGTTAACGAAATGGAGCAAGCAAACATGGGTCATCGCCATATTTCTTGGAAGCATGTATGGTCAAACTTCTGTCTTTCGTGTAATAATGAGAAGTTGCTTGACGATAATGCTGTTCTTCAGGATGTTGGAATCCGGAACAATTCTCAGGTGACTTTCATGCCATATGTGATGAAGAAGGGTCGAGGAAGACACTCCAAGAGGAAGAAGCATCGTCTCTTTCGTTCTCTCCACAAGACTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.67

Weight (kDa)

9.75

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 52 - 139 7.2e-32 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 9
AccIII TCCGGA 1 cut(s) 384
AciI CCGC 2 cut(s) 9, 200
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 251, 353
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 142, 196
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 5 cut(s) 43, 64, 175, 215, 235
AluI AGCT 5 cut(s) 43, 64, 175, 215, 235
Alw26I GTCTC 3 cut(s) 20, 164, 470
AlwI GGATC 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 384
Aor51HI AGCGCT 1 cut(s) 151
ApoI RAATTY 1 cut(s) 208
AspLEI GCGC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 196
BclI TGATCA 1 cut(s) 240
BcoDI GTCTC 3 cut(s) 20, 164, 470
BfoI RGCGCY 1 cut(s) 153
BglII AGATCT 1 cut(s) 226
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 196
BseAI TCCGGA 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 142, 196
BseMII CTCAG 2 cut(s) 74, 410
BseRI GAGGAG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 142, 196
BsmAI GTCTC 3 cut(s) 20, 164, 470
BsmBI CGTCTC 3 cut(s) 20, 164, 470
Bsp13I TCCGGA 1 cut(s) 384
Bsp143I GATC 3 cut(s) 73, 226, 240
BspACI CCGC 2 cut(s) 9, 200
BspCNI CTCAG 2 cut(s) 73, 409
BspEI TCCGGA 1 cut(s) 384
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 3 cut(s) 73, 226, 240
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 60, 396
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 3 cut(s) 76, 229, 243
BstMAI GTCTC 3 cut(s) 20, 164, 470
BstMBI GATC 3 cut(s) 73, 226, 240
BstNSI RCATGY 1 cut(s) 308
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 204
CfoI GCGC 1 cut(s) 152
CseI GACGC 1 cut(s) 146
CviAII CATG 4 cut(s) 205, 277, 305, 409
CviJI RGCY 7 cut(s) 43, 64, 135, 175, 183, 215, 235
CviKI_1 RGCY 7 cut(s) 43, 64, 135, 175, 183, 215, 235
DdeI CTNAG 2 cut(s) 60, 396
DpnI GATC 3 cut(s) 75, 228, 242
DpnII GATC 3 cut(s) 73, 226, 240
Eco47III AGCGCT 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 251, 353
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 208
Esp3I CGTCTC 3 cut(s) 20, 164, 470
FaeI CATG 4 cut(s) 208, 280, 308, 412
FaiI YATR 9 cut(s) 155, 206, 278, 291, 306, 310, 410, 415, 417
FatI CATG 4 cut(s) 204, 276, 304, 408
FauNDI CATATG 1 cut(s) 415
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 10
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 10
HaeII RGCGCY 1 cut(s) 153
HapII CCGG 1 cut(s) 385
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 152
Hin1II CATG 4 cut(s) 208, 280, 308, 412
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 2 cut(s) 41, 233
HinfI GANTC 3 cut(s) 79, 100, 381
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 1 cut(s) 385
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 78, 96, 115, 231
Hpy188III TCNNGA 5 cut(s) 205, 244, 371, 385, 495
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 3 cut(s) 92, 170, 182
HpyAV CCTTC 2 cut(s) 136, 421
HpyCH4IV ACGT 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 60, 396
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 208, 280, 308, 412
HspAI GCGC 1 cut(s) 150
Kpn2I TCCGGA 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 240
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 3 cut(s) 73, 226, 240
LmnI GCTCC 3 cut(s) 69, 188, 265
LpnPI CCDG 3 cut(s) 356, 383, 398
LweI GCATC 1 cut(s) 469
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 121, 400
MalI GATC 3 cut(s) 75, 228, 242
MbiI CCGCTC 1 cut(s) 9
MboI GATC 3 cut(s) 73, 226, 240
MboII GAAGA 6 cut(s) 259, 359, 436, 450, 466, 483
MflI RGATCY 1 cut(s) 226
MluCI AATT 2 cut(s) 208, 391
MmeI TCCRAC 2 cut(s) 128, 358
MnlI CCTC 4 cut(s) 90, 196, 428, 444
MroI TCCGGA 1 cut(s) 384
MseI TTAA 2 cut(s) 45, 255
MspI CCGG 1 cut(s) 385
NdeI CATATG 1 cut(s) 415
NdeII GATC 3 cut(s) 73, 226, 240
NlaIII CATG 4 cut(s) 208, 280, 308, 412
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 121, 400
NspI RCATGY 1 cut(s) 308
PagI TCATGA 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 469
PfeI GAWTC 3 cut(s) 79, 100, 381
PkrI GCNGC 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 184
PsuI RGATCY 1 cut(s) 226
SaqAI TTAA 2 cut(s) 45, 255
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 3 cut(s) 73, 226, 240
SetI ASST 7 cut(s) 45, 66, 93, 177, 217, 237, 402
SfaNI GCATC 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 208, 391
SsiI CCGC 2 cut(s) 9, 200
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 177, 433
TasI AATT 2 cut(s) 208, 391
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 3 cut(s) 79, 100, 381
Tru1I TTAA 2 cut(s) 45, 255
Tru9I TTAA 2 cut(s) 45, 255
TseFI GTSAC 2 cut(s) 121, 400
Tsp45I GTSAC 2 cut(s) 121, 400
TspDTI ATGAA 3 cut(s) 221, 397, 437
TspGWI ACGGA 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.